Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SARS2 Sequence: fasta or formatted (520aa) NCBI GI: 225579074
Description:

seryl-tRNA synthetase 2 isoform a precursor

Referenced in:

tRNA Enzymes

Other entries for this name:
alt prot [518aa] seryl-tRNA synthetase 2 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         42           2
 C cysteine            1.5          8           1
 D aspartate           3.7         19           1
 E glutamate           7.1         37           3
 F phenylalanine       4.8         25           1
 G glycine             7.9         41           2
 H histidine           2.7         14           2
 I isoleucine          3.3         17           2
 K lysine              2.5         13           1
 L leucine            12.3         64           2
 M methionine          2.3         12           1
 N asparagine          3.1         16           1
 P proline             6.9         36           2
 Q glutamine           6.2         32           2
 R arginine            8.1         42           2
 S serine              5.6         29           2
 T threonine           5.4         28           2
 V valine              5.6         29           1
 W tryptophan          0.6          3           1
 Y tyrosine            2.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   seryl-tRNA synthetase 2 isoform a precursor 
SARS2                 0.935   seryl-tRNA synthetase 2 isoform b precursor 
SARS                  0.140   seryl-tRNA synthetase 
C21orf56              0.009   hypothetical protein LOC84221 isoform 1 
GEMIN8                0.008   gem (nuclear organelle) associated protein 8 
GEMIN8                0.008   gem (nuclear organelle) associated protein 8 
GEMIN8                0.008   gem (nuclear organelle) associated protein 8 
HOOK2                 0.008   hook homolog 2 isoform 2 
HOOK2                 0.008   hook homolog 2 isoform 1 
CCDC88C               0.007   DVL-binding protein DAPLE 
KRT82                 0.006   keratin 82 
TCOF1                 0.005   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.005   Treacher Collins-Franceschetti syndrome 1 isoform a ...
MLL2                  0.005   myeloid/lymphoid or mixed-lineage leukemia 2 
LOC100289289          0.005   PREDICTED: hypothetical protein XP_002343409 
PDIA5                 0.005   protein disulfide isomerase A5 
CENPF                 0.005   centromere protein F 
RCSD1                 0.004   RCSD domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press