Search of human proteins with 16117794

Search of human proteins with 16117794

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|16117794 ribosomal protein L36 [Homo sapiens]
         (105 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|16117794 ribosomal protein L36 [Homo sapiens]                      209   5e-55
gi|16117796 ribosomal protein L36 [Homo sapiens]                      209   5e-55
gi|239747082 PREDICTED: hypothetical protein XP_002344489 [Homo ...   158   8e-40
gi|50083281 KIAA1853 protein [Homo sapiens]                            29   0.90 
gi|56090620 NFKB activating protein-like [Homo sapiens]                28   1.2  
gi|124248546 HHIP-like 2 [Homo sapiens]                                27   2.6  
gi|113722133 senataxin [Homo sapiens]                                  27   3.4  
gi|237649015 EBNA1 binding protein 2 isoform 2 [Homo sapiens]          27   3.4  
gi|237649012 EBNA1 binding protein 2 isoform 1 [Homo sapiens]          27   3.4  
gi|11067749 bromodomain containing protein 3 [Homo sapiens]            27   3.4  
gi|148529000 deleted in bladder cancer 1 [Homo sapiens]                27   4.5  
gi|53729339 mitochondrial translational initiation factor 2 prec...    27   4.5  
gi|53729337 mitochondrial translational initiation factor 2 prec...    27   4.5  
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa...    27   4.5  
gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]        26   5.9  
gi|148746195 trichohyalin [Homo sapiens]                               26   5.9  
gi|22095388 islet cell autoantigen 1,69kDa-like isoform 1 [Homo ...    26   5.9  
gi|168229156 NFKB activating protein [Homo sapiens]                    26   7.7  
gi|94536868 PR domain containing 15 isoform 2 [Homo sapiens]           26   7.7  
gi|93204879 PR domain containing 15 isoform 1 [Homo sapiens]           26   7.7  

>gi|16117794 ribosomal protein L36 [Homo sapiens]
          Length = 105

 Score =  209 bits (531), Expect = 5e-55
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
           MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1   MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60

Query: 61  LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD 105
           LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD
Sbjct: 61  LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD 105


>gi|16117796 ribosomal protein L36 [Homo sapiens]
          Length = 105

 Score =  209 bits (531), Expect = 5e-55
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
           MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1   MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60

Query: 61  LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD 105
           LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD
Sbjct: 61  LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKKD 105


>gi|239747082 PREDICTED: hypothetical protein XP_002344489 [Homo
           sapiens]
          Length = 151

 Score =  158 bits (400), Expect = 8e-40
 Identities = 86/110 (78%), Positives = 90/110 (81%), Gaps = 5/110 (4%)

Query: 1   MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
           +ALRYPMA+GLNKGHKVTKNVS PRHS RR  LTKHTKFV+DMIREVCGFAPYE   MEL
Sbjct: 42  VALRYPMAMGLNKGHKVTKNVSNPRHSCRRRCLTKHTKFVQDMIREVCGFAPYECHTMEL 101

Query: 61  LKVSKDKRAL---KFIKKRVGT--HIRAKRKREELSNVLAAMRKAAAKKD 105
            KVSK    L   KFIKKRVG   HI AKRKREELSNVLAAM+KA AKKD
Sbjct: 102 QKVSKAMELLKTSKFIKKRVGARMHIHAKRKREELSNVLAAMKKATAKKD 151


>gi|50083281 KIAA1853 protein [Homo sapiens]
          Length = 611

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 9   VGLNKGHKVT--KNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKD 66
           +G  +GH  +  K+++ P  SR + +  K T+  R   R    ++P   +  +     K 
Sbjct: 86  LGATRGHSASHDKDLTPPPSSRGKKKKKKSTRKKR---RRSSSYSPSPVKKKKKKSSKKH 142

Query: 67  KRALKFIKKRVGTHIRAKRKREE 89
           KR   F KKR  +    K KR +
Sbjct: 143 KRRRSFSKKRRHSSSSPKSKRRD 165


>gi|56090620 NFKB activating protein-like [Homo sapiens]
          Length = 402

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 21/102 (20%), Positives = 44/102 (43%)

Query: 3   LRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLK 62
           L+Y  A+   +G  + + V   +   RRG +   ++ +          +    R ME ++
Sbjct: 294 LKYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIGSFECSGYVMSGSRHRRMEAVR 353

Query: 63  VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKK 104
           + K+ +     +KR       + +R+  S +LA+ R+   KK
Sbjct: 354 LRKENQIYSADEKRALASFNQEERRKRESKILASFREMVHKK 395


>gi|124248546 HHIP-like 2 [Homo sapiens]
          Length = 724

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 74  KKRVGTHIRAKRKREELSNVLAAMRKAAAKK 104
           K RVG H+R  ++R+ L +    MR +A +K
Sbjct: 687 KARVGPHVRQGKRRKSLKSHSGRMRPSAEQK 717


>gi|113722133 senataxin [Homo sapiens]
          Length = 2677

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 59   ELLKVSKDKRALKFIKKRVGTHIRAKRKREE 89
            E+LK S D +    +KK + +H++A  KR+E
Sbjct: 2055 EVLKFSLDSQVNHRMKKELPSHVQAMHKRKE 2085


>gi|237649015 EBNA1 binding protein 2 isoform 2 [Homo sapiens]
          Length = 306

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 15/46 (32%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
           ++ AME  + +K  RAL+   K+V T +  KR++E+ ++++ A++K
Sbjct: 157 KQAAMERSEKAKQLRALRKYGKKVQTEVLQKRQQEK-AHMMNAIKK 201


>gi|237649012 EBNA1 binding protein 2 isoform 1 [Homo sapiens]
          Length = 361

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 15/46 (32%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
           ++ AME  + +K  RAL+   K+V T +  KR++E+ ++++ A++K
Sbjct: 212 KQAAMERSEKAKQLRALRKYGKKVQTEVLQKRQQEK-AHMMNAIKK 256


>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
          Length = 726

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 10/47 (21%)

Query: 24  PRHSRRRGRLTKHTKFVRDMIREVCG----------FAPYERRAMEL 60
           P+H+ ++G+L++H ++   ++RE+            + P +  A+EL
Sbjct: 299 PQHAGKKGKLSEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEALEL 345


>gi|148529000 deleted in bladder cancer 1 [Homo sapiens]
          Length = 761

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 32  RLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKR 87
           RL  HT F+ + IR    F P  R+ M  L +  +K  + FI   +G  +R  + R
Sbjct: 498 RLYVHTTFISNEIRLDTFFDPRWRKRMS-LTLKSNKNRMDFIHMVIGMSMRICQMR 552


>gi|53729339 mitochondrial translational initiation factor 2
           precursor [Homo sapiens]
          Length = 727

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 65  KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
           K +  L+F++++    ++ K KRE  SNVL+ + K
Sbjct: 487 KKRSILRFLERKEQIPLKPKEKRERDSNVLSVIIK 521


>gi|53729337 mitochondrial translational initiation factor 2
           precursor [Homo sapiens]
          Length = 727

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 65  KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
           K +  L+F++++    ++ K KRE  SNVL+ + K
Sbjct: 487 KKRSILRFLERKEQIPLKPKEKRERDSNVLSVIIK 521


>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
           sapiens]
          Length = 685

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 15  HKVTKNVSKPRHSRRRGRLTKHTKFVRDMIRE 46
           HK  K++S P HSR    +T H K     +R+
Sbjct: 339 HKAKKSLSHPSHSRPGPMVTPHNKAKSPGVRQ 370


>gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]
          Length = 993

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 31  GRLTKHTKFVRDMIREVCGFAPYERRAMELLKV 63
           G+LT H+   R ++R++ G A  E   + LL V
Sbjct: 459 GQLTAHSSVARHLLRDLPGVAATEETGVPLLLV 491


>gi|148746195 trichohyalin [Homo sapiens]
          Length = 1943

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query: 25   RHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAK 84
            R  + R R  +  K ++    ++ G  P +RR  E  K  +++  L+  ++++    R K
Sbjct: 951  RRRQERERQYRKDKKLQQKEEQLLGEEPEKRRRQEREKKYREEEELQQEEEQLLREEREK 1010

Query: 85   RKREE 89
            R+R+E
Sbjct: 1011 RRRQE 1015


>gi|22095388 islet cell autoantigen 1,69kDa-like isoform 1 [Homo
           sapiens]
          Length = 482

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 35  KHTKFVRDMIREVC-GFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNV 93
           K T  +   I E C GF PY+  A++ L+ +  K +     +++G  +  +  +  LS+ 
Sbjct: 236 KKTARMMSQIHEACIGFHPYDFVALKQLQDTPSKISEDNKDEQIGGFLTEQLNKLVLSDE 295

Query: 94  LAAMRKAAAKKD 105
            A+     A KD
Sbjct: 296 EASFESEQANKD 307


>gi|168229156 NFKB activating protein [Homo sapiens]
          Length = 415

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/102 (18%), Positives = 43/102 (42%)

Query: 3   LRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLK 62
           L Y  A+   +G  + + V   +   RRG +   ++ +          +    R ME ++
Sbjct: 307 LNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECSGYVMSGSRHRRMEAVR 366

Query: 63  VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRKAAAKK 104
           + K+ +     +KR       + +R+  + +LA+ R+   +K
Sbjct: 367 LRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYRK 408


>gi|94536868 PR domain containing 15 isoform 2 [Homo sapiens]
          Length = 1178

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 2   ALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKF---VRDMIREVCGFAPYERRAM 58
           ALR+ M   L+KG K  +     R   ++  + KH K    ++D + E+CG    ER  M
Sbjct: 797 ALRHHMK--LHKGIKEYECKECHRRFAQKVNMLKHCKRHTGIKDFMCELCGKTFSERNTM 854

Query: 59  ELLKV 63
           E  K+
Sbjct: 855 ETHKL 859


>gi|93204879 PR domain containing 15 isoform 1 [Homo sapiens]
          Length = 1507

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 2    ALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKF---VRDMIREVCGFAPYERRAM 58
            ALR+ M   L+KG K  +     R   ++  + KH K    ++D + E+CG    ER  M
Sbjct: 1126 ALRHHMK--LHKGIKEYECKECHRRFAQKVNMLKHCKRHTGIKDFMCELCGKTFSERNTM 1183

Query: 59   ELLKV 63
            E  K+
Sbjct: 1184 ETHKL 1188


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,225,389
Number of Sequences: 37866
Number of extensions: 111788
Number of successful extensions: 571
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 21
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.