Guide to the Human Genome
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Name: LOC100289079 Sequence: fasta or formatted (151aa) NCBI GI: 239747082
Description:

PREDICTED: hypothetical protein XP_002344489

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         16           3
 C cysteine            3.3          5           1
 D aspartate           1.3          2           1
 E glutamate           4.6          7           2
 F phenylalanine       3.3          5           1
 G glycine             5.3          8           1
 H histidine           5.3          8           1
 I isoleucine          2.6          4           1
 K lysine             13.2         20           2
 L leucine             8.6         13           2
 M methionine          6.0          9           1
 N asparagine          2.6          4           1
 P proline             2.6          4           1
 Q glutamine           2.0          3           1
 R arginine            9.3         14           3
 S serine              4.6          7           1
 T threonine           4.6          7           1
 V valine              6.6         10           1
 W tryptophan          1.3          2           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344489 
RPL36                 0.467   ribosomal protein L36 
RPL36                 0.467   ribosomal protein L36 
ADH6                  0.035   class V alcohol dehydrogenase isoform 1 
ADH6                  0.032   class V alcohol dehydrogenase isoform 2 
KCNIP4                0.018   Kv channel interacting protein 4 isoform 5 
UNC13D                0.014   unc-13 homolog D 
HAUS6                 0.007   HAUS augmin-like complex, subunit 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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