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Search of human proteins with 157426879
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157426879 nuclear protein localization 4 [Homo sapiens]
(608 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157426879 nuclear protein localization 4 [Homo sapiens] 1256 0.0
gi|98991767 mitogen-activated protein kinase kinase kinase 7 int... 39 0.011
gi|14149669 mitogen-activated protein kinase kinase kinase 7 int... 38 0.024
gi|5032105 small optic lobes [Homo sapiens] 37 0.040
gi|109150431 ring finger protein 31 [Homo sapiens] 37 0.053
gi|118918415 shank-interacting protein-like 1 [Homo sapiens] 36 0.12
gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1 is... 33 1.00
gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1 ... 33 1.00
gi|110815809 zinc finger, RAN-binding domain containing 1 protei... 33 1.00
gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo s... 32 1.7
gi|169234665 tumor protein p63 isoform 6 [Homo sapiens] 31 3.8
gi|169234663 tumor protein p63 isoform 5 [Homo sapiens] 31 3.8
gi|169234661 tumor protein p63 isoform 4 [Homo sapiens] 31 3.8
gi|169234659 tumor protein p63 isoform 3 [Homo sapiens] 31 3.8
gi|169234657 tumor protein p63 isoform 2 [Homo sapiens] 31 3.8
gi|31543818 tumor protein p63 isoform 1 [Homo sapiens] 31 3.8
gi|148664248 kelch domain containing 6 [Homo sapiens] 31 3.8
gi|187829052 tumor protein p73 isoform d [Homo sapiens] 30 4.9
gi|187829017 tumor protein p73 isoform c [Homo sapiens] 30 4.9
gi|187828902 tumor protein p73 isoform b [Homo sapiens] 30 4.9
gi|4885645 tumor protein p73 isoform a [Homo sapiens] 30 4.9
gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens] 30 4.9
gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens] 30 4.9
gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens] 30 6.5
gi|30794260 hypothetical protein LOC90529 [Homo sapiens] 30 6.5
>gi|157426879 nuclear protein localization 4 [Homo sapiens]
Length = 608
Score = 1256 bits (3250), Expect = 0.0
Identities = 608/608 (100%), Positives = 608/608 (100%)
Query: 1 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS 60
MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS
Sbjct: 1 MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS 60
Query: 61 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK 120
NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK
Sbjct: 61 NKSLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGK 120
Query: 121 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF 180
IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF
Sbjct: 121 IYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHAYIRKLTGGADKGKF 180
Query: 181 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF 240
VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF
Sbjct: 181 VALENISCKIKSGCEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDF 240
Query: 241 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA 300
WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA
Sbjct: 241 WRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAEVVDEIA 300
Query: 301 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD 360
AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD
Sbjct: 301 AKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEECITAGDFQNKHPNMCRLSPD 360
Query: 361 GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY 420
GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY
Sbjct: 361 GHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRDECLLPCKDAPELGYAKESSSEQY 420
Query: 421 VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG 480
VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG
Sbjct: 421 VPDVFYKDVDKFGNEITQLARPLPVEYLIIDITTTFPKDPVYTFSISQNPFPIENRDVLG 480
Query: 481 ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA 540
ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA
Sbjct: 481 ETQDFHSLATYLSQNTSSVFLDTISDFHLLLFLVTNEVMPLQDSISLLLEAVRTRNEELA 540
Query: 541 QTWKRSEQWATIEQLCSTVGGQLPGLHEYGAVGGSTHTATAAMWACQHCTFMNQPGTGHC 600
QTWKRSEQWATIEQLCSTVGGQLPGLHEYGAVGGSTHTATAAMWACQHCTFMNQPGTGHC
Sbjct: 541 QTWKRSEQWATIEQLCSTVGGQLPGLHEYGAVGGSTHTATAAMWACQHCTFMNQPGTGHC 600
Query: 601 EMCSLPRT 608
EMCSLPRT
Sbjct: 601 EMCSLPRT 608
>gi|98991767 mitogen-activated protein kinase kinase kinase 7
interacting protein 3 [Homo sapiens]
Length = 712
Score = 39.3 bits (90), Expect = 0.011
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 582 AMWACQHCTFMNQPGTGHCEMCSLPR 607
A W C CTF+N P CE C +PR
Sbjct: 685 APWNCDSCTFLNHPALNRCEQCEMPR 710
>gi|14149669 mitogen-activated protein kinase kinase kinase 7
interacting protein 2 [Homo sapiens]
Length = 693
Score = 38.1 bits (87), Expect = 0.024
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 576 THTATAAMWACQHCTFMNQPGTGHCEMCSLPR 607
T A W C CTF+N P CE C +PR
Sbjct: 660 TEDDEGAQWNCTACTFLNHPALIRCEQCEMPR 691
>gi|5032105 small optic lobes [Homo sapiens]
Length = 1086
Score = 37.4 bits (85), Expect = 0.040
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 579 ATAAMWACQHCTFMNQPGTGHCEMCSLPR 607
AT W+C CTF+N G C +C PR
Sbjct: 2 ATVGEWSCVRCTFLNPAGQRQCSICEAPR 30
Score = 31.6 bits (70), Expect = 2.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 584 WACQHCTFMNQPGTGHCEMCSLPR 607
WAC CT N P C +C PR
Sbjct: 147 WACPRCTLHNTPVASSCSVCGGPR 170
Score = 29.6 bits (65), Expect = 8.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 584 WACQHCTFMNQPGTGHCEMCSLPR 607
WAC CT +N HC C P+
Sbjct: 416 WACPACTLLNALRAKHCAACHTPQ 439
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 37.0 bits (84), Expect = 0.053
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 546 SEQWATIEQLCSTVGG-QLPGLHEYG--AVGGSTHTATAAMWACQHCTFMNQPGTGHCEM 602
+E WA + C G + GL G GG WACQ CTF N+ C +
Sbjct: 313 NEPWAVLCVACDRPRGCKGLGLGTEGPQGTGGLEPDLARGRWACQSCTFENEAAAVLCSI 372
Query: 603 CSLPR 607
C PR
Sbjct: 373 CERPR 377
Score = 29.6 bits (65), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 578 TATAAMWACQHCTFMNQPGTGHCEMCS 604
+A + +W C HCTF N C MC+
Sbjct: 407 SAQSQVWYCIHCTFCNSSPGWVCVMCN 433
>gi|118918415 shank-interacting protein-like 1 [Homo sapiens]
Length = 387
Score = 35.8 bits (81), Expect = 0.12
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 584 WACQHCTFMNQPGTGHCEMCSLPR 607
W+C CTF+N P CEMCS R
Sbjct: 352 WSCPSCTFINAPDRPGCEMCSTQR 375
>gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1
isoform 1 [Homo sapiens]
Length = 468
Score = 32.7 bits (73), Expect = 1.00
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 584 WACQHCTFMNQPGTGHCEMCSLPR 607
W C CTF+N+P CEMC R
Sbjct: 155 WQCPGCTFINKPTRPGCEMCCRAR 178
>gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1
isoform 2 [Homo sapiens]
Length = 510
Score = 32.7 bits (73), Expect = 1.00
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 584 WACQHCTFMNQPGTGHCEMCSLPR 607
W C CTF+N+P CEMC R
Sbjct: 197 WQCPGCTFINKPTRPGCEMCCRAR 220
>gi|110815809 zinc finger, RAN-binding domain containing 1 protein
[Homo sapiens]
Length = 708
Score = 32.7 bits (73), Expect = 1.00
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 584 WACQHCTFMNQPGTGHCEMCSLPR 607
WAC++CT+ N P C MC R
Sbjct: 8 WACEYCTYENWPSAIKCTMCRAQR 31
>gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo
sapiens]
Length = 1079
Score = 32.0 bits (71), Expect = 1.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 584 WACQHCTFMNQPGTGHCEMCSLPR 607
W C CT++N +CEMC P+
Sbjct: 625 WQCSLCTYINNSELPYCEMCETPQ 648
>gi|169234665 tumor protein p63 isoform 6 [Homo sapiens]
Length = 393
Score = 30.8 bits (68), Expect = 3.8
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 27/114 (23%)
Query: 183 LENISCKIKSGCEGHL----PWPNGICTKCQPSAITLNRQKYRHVDNIMFE--NHTVADR 236
L+ + C+I C + P P G + P +K HV ++ NH ++
Sbjct: 104 LKKLYCQIAKTCPIQIKVMTPPPQGAVIRAMPVY-----KKAEHVTEVVKRCPNHELSRE 158
Query: 237 FLD--------FWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQ 282
F + R GN H Y+ + P+ R V YEPPQ+GT+
Sbjct: 159 FNEGQIAPPSHLIRVEGNSHAQYV--------EDPITGRQSVLVPYEPPQVGTE 204
>gi|169234663 tumor protein p63 isoform 5 [Homo sapiens]
Length = 461
Score = 30.8 bits (68), Expect = 3.8
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 27/114 (23%)
Query: 183 LENISCKIKSGCEGHL----PWPNGICTKCQPSAITLNRQKYRHVDNIMFE--NHTVADR 236
L+ + C+I C + P P G + P +K HV ++ NH ++
Sbjct: 104 LKKLYCQIAKTCPIQIKVMTPPPQGAVIRAMPVY-----KKAEHVTEVVKRCPNHELSRE 158
Query: 237 FLD--------FWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQ 282
F + R GN H Y+ + P+ R V YEPPQ+GT+
Sbjct: 159 FNEGQIAPPSHLIRVEGNSHAQYV--------EDPITGRQSVLVPYEPPQVGTE 204
>gi|169234661 tumor protein p63 isoform 4 [Homo sapiens]
Length = 586
Score = 30.8 bits (68), Expect = 3.8
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 27/114 (23%)
Query: 183 LENISCKIKSGCEGHL----PWPNGICTKCQPSAITLNRQKYRHVDNIMFE--NHTVADR 236
L+ + C+I C + P P G + P +K HV ++ NH ++
Sbjct: 104 LKKLYCQIAKTCPIQIKVMTPPPQGAVIRAMPVY-----KKAEHVTEVVKRCPNHELSRE 158
Query: 237 FLD--------FWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQ 282
F + R GN H Y+ + P+ R V YEPPQ+GT+
Sbjct: 159 FNEGQIAPPSHLIRVEGNSHAQYV--------EDPITGRQSVLVPYEPPQVGTE 204
>gi|169234659 tumor protein p63 isoform 3 [Homo sapiens]
Length = 487
Score = 30.8 bits (68), Expect = 3.8
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 27/114 (23%)
Query: 183 LENISCKIKSGCEGHL----PWPNGICTKCQPSAITLNRQKYRHVDNIMFE--NHTVADR 236
L+ + C+I C + P P G + P +K HV ++ NH ++
Sbjct: 198 LKKLYCQIAKTCPIQIKVMTPPPQGAVIRAMPVY-----KKAEHVTEVVKRCPNHELSRE 252
Query: 237 FLD--------FWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQ 282
F + R GN H Y+ + P+ R V YEPPQ+GT+
Sbjct: 253 FNEGQIAPPSHLIRVEGNSHAQYV--------EDPITGRQSVLVPYEPPQVGTE 298
>gi|169234657 tumor protein p63 isoform 2 [Homo sapiens]
Length = 555
Score = 30.8 bits (68), Expect = 3.8
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 27/114 (23%)
Query: 183 LENISCKIKSGCEGHL----PWPNGICTKCQPSAITLNRQKYRHVDNIMFE--NHTVADR 236
L+ + C+I C + P P G + P +K HV ++ NH ++
Sbjct: 198 LKKLYCQIAKTCPIQIKVMTPPPQGAVIRAMPVY-----KKAEHVTEVVKRCPNHELSRE 252
Query: 237 FLD--------FWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQ 282
F + R GN H Y+ + P+ R V YEPPQ+GT+
Sbjct: 253 FNEGQIAPPSHLIRVEGNSHAQYV--------EDPITGRQSVLVPYEPPQVGTE 298
>gi|31543818 tumor protein p63 isoform 1 [Homo sapiens]
Length = 680
Score = 30.8 bits (68), Expect = 3.8
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 27/114 (23%)
Query: 183 LENISCKIKSGCEGHL----PWPNGICTKCQPSAITLNRQKYRHVDNIMFE--NHTVADR 236
L+ + C+I C + P P G + P +K HV ++ NH ++
Sbjct: 198 LKKLYCQIAKTCPIQIKVMTPPPQGAVIRAMPVY-----KKAEHVTEVVKRCPNHELSRE 252
Query: 237 FLD--------FWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQ 282
F + R GN H Y+ + P+ R V YEPPQ+GT+
Sbjct: 253 FNEGQIAPPSHLIRVEGNSHAQYV--------EDPITGRQSVLVPYEPPQVGTE 298
>gi|148664248 kelch domain containing 6 [Homo sapiens]
Length = 623
Score = 30.8 bits (68), Expect = 3.8
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 194 CEGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDFWRKTGNQHFGYLY 253
C G + N I + SA L+RQK ++V+ ++ H DR FW K F LY
Sbjct: 324 CTGVVMENNTIIVAGEASASKLSRQKNKNVE--IYRYH---DRGNQFWEKLCTAEFRELY 378
Query: 254 GRYTEHKDI 262
+ H D+
Sbjct: 379 ALGSIHNDL 387
>gi|187829052 tumor protein p73 isoform d [Homo sapiens]
Length = 426
Score = 30.4 bits (67), Expect = 4.9
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 183 LENISCKIKSGCEGHL----PWPNGICTKCQPSAITLNRQKYRHVDNIMFE--NHTVADR 236
L+ + C+I C + P P G + P +K HV +++ NH +
Sbjct: 99 LKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVY-----KKAEHVTDVVKRCPNHELGRD 153
Query: 237 FLDFWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQ 282
F + + +++ D P+ R V YEPPQ+GT+
Sbjct: 154 FNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTE 199
>gi|187829017 tumor protein p73 isoform c [Homo sapiens]
Length = 450
Score = 30.4 bits (67), Expect = 4.9
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 183 LENISCKIKSGCEGHL----PWPNGICTKCQPSAITLNRQKYRHVDNIMFE--NHTVADR 236
L+ + C+I C + P P G + P +K HV +++ NH +
Sbjct: 99 LKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVY-----KKAEHVTDVVKRCPNHELGRD 153
Query: 237 FLDFWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQ 282
F + + +++ D P+ R V YEPPQ+GT+
Sbjct: 154 FNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTE 199
>gi|187828902 tumor protein p73 isoform b [Homo sapiens]
Length = 587
Score = 30.4 bits (67), Expect = 4.9
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 183 LENISCKIKSGCEGHL----PWPNGICTKCQPSAITLNRQKYRHVDNIMFE--NHTVADR 236
L+ + C+I C + P P G + P +K HV +++ NH +
Sbjct: 99 LKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVY-----KKAEHVTDVVKRCPNHELGRD 153
Query: 237 FLDFWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQ 282
F + + +++ D P+ R V YEPPQ+GT+
Sbjct: 154 FNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTE 199
>gi|4885645 tumor protein p73 isoform a [Homo sapiens]
Length = 636
Score = 30.4 bits (67), Expect = 4.9
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 183 LENISCKIKSGCEGHL----PWPNGICTKCQPSAITLNRQKYRHVDNIMFE--NHTVADR 236
L+ + C+I C + P P G + P +K HV +++ NH +
Sbjct: 148 LKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVY-----KKAEHVTDVVKRCPNHELGRD 202
Query: 237 FLDFWRKTGNQHFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQ 282
F + + +++ D P+ R V YEPPQ+GT+
Sbjct: 203 FNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQSVVVPYEPPQVGTE 248
>gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens]
Length = 485
Score = 30.4 bits (67), Expect = 4.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 79 PSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLS 115
P GP SE+ +PPGF+ N+V D + Y S
Sbjct: 199 PGPDTGPDSELSPCIPPGFR-----NLVADRVPNYTS 230
>gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens]
Length = 501
Score = 30.4 bits (67), Expect = 4.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 79 PSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLS 115
P GP SE+ +PPGF+ N+V D + Y S
Sbjct: 199 PGPDTGPDSELSPCIPPGFR-----NLVADRVPNYTS 230
>gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens]
Length = 1294
Score = 30.0 bits (66), Expect = 6.5
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 20/75 (26%)
Query: 67 LKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAPNVVEDEIDQYLSKQDGKIYRSRD 126
L IKH P A +S+ +T PP K G NVV+ E K+ RS
Sbjct: 1179 LAIKHSR-----PGPTANGASKEKTKAPPNVKNEGPLNVVKTE----------KVDRSTQ 1223
Query: 127 PQLCRHGPLGKCVHC 141
+L KCVHC
Sbjct: 1224 DELST-----KCVHC 1233
>gi|30794260 hypothetical protein LOC90529 [Homo sapiens]
Length = 287
Score = 30.0 bits (66), Expect = 6.5
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 454 TTFPKDPVYTFSISQNPFP----------IENRDVLGETQDFHSLATYLSQNTS 497
T FPK+P+ FS +P P E D LG + F S A+++S NTS
Sbjct: 196 TLFPKNPILNFSAQPSPLPPKPPFPGPGQYEIVDYLGPRKHFISSASFVS-NTS 248
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,114,759
Number of Sequences: 37866
Number of extensions: 1177121
Number of successful extensions: 2378
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2357
Number of HSP's gapped (non-prelim): 35
length of query: 608
length of database: 18,247,518
effective HSP length: 108
effective length of query: 500
effective length of database: 14,157,990
effective search space: 7078995000
effective search space used: 7078995000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.