Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLFN12 Sequence: fasta or formatted (578aa) NCBI GI: 157388955
Description:

schlafen family member 12

Referenced in:

T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         25           2
 C cysteine            2.9         17           2
 D aspartate           5.0         29           2
 E glutamate           7.6         44           2
 F phenylalanine       5.2         30           2
 G glycine             4.8         28           3
 H histidine           1.7         10           2
 I isoleucine          5.4         31           2
 K lysine              9.3         54           3
 L leucine            11.4         66           2
 M methionine          2.9         17           1
 N asparagine          4.3         25           2
 P proline             2.8         16           2
 Q glutamine           3.8         22           1
 R arginine            5.5         32           2
 S serine              7.6         44           3
 T threonine           4.8         28           2
 V valine              5.2         30           1
 W tryptophan          1.0          6           1
 Y tyrosine            4.2         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   schlafen family member 12 
SLFN12L               0.715   schlafen family member 12-like 
SLFN5                 0.375   schlafen family member 5 
SLFN14                0.358   schlafen family member 14 
SLFN13                0.308   schlafen family member 13 
SLFN11                0.295   schlafen family member 11 
SLFN11                0.295   schlafen family member 11 
SLFN11                0.295   schlafen family member 11 
SLFN11                0.295   schlafen family member 11 
SLFN11                0.295   schlafen family member 11 
SLFNL1                0.011   schlafen-like 1 
NUP210                0.009   nucleoporin 210 
GABRA2                0.007   gamma-aminobutyric acid A receptor, alpha 2 
GABRA2                0.007   gamma-aminobutyric acid A receptor, alpha 2 precurs...
JMY                   0.007   junction-mediating and regulatory protein 
PHLDB2                0.007   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.007   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.007   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.007   pleckstrin homology-like domain, family B, member 2 ...
POLRMT                0.005   mitochondrial DNA-directed RNA polymerase precursor...
EDC4                  0.005   autoantigen RCD8 
FLJ37396              0.004   PREDICTED: hypothetical protein LOC285754 
C11orf9               0.004   hypothetical protein LOC745 isoform 1 
C11orf9               0.004   hypothetical protein LOC745 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press