Guide to the Human Genome
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Name: C4orf27 Sequence: fasta or formatted (346aa) NCBI GI: 157388914
Description:

hypothetical protein LOC54969

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         21           2
 C cysteine            2.0          7           1
 D aspartate           6.9         24           1
 E glutamate           8.4         29           2
 F phenylalanine       5.2         18           1
 G glycine             6.9         24           4
 H histidine           2.6          9           1
 I isoleucine          4.6         16           3
 K lysine             10.4         36           3
 L leucine             9.8         34           2
 M methionine          2.0          7           2
 N asparagine          4.6         16           1
 P proline             4.3         15           2
 Q glutamine           3.2         11           1
 R arginine            4.0         14           2
 S serine              4.0         14           2
 T threonine           4.3         15           2
 V valine              5.8         20           2
 W tryptophan          0.6          2           1
 Y tyrosine            4.0         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54969 
CCDC158               0.015   coiled-coil domain containing 158 
DDX46                 0.012   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
RUFY1                 0.009   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.009   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.009   RUN and FYVE domain-containing 1 isoform a 
VARS                  0.007   valyl-tRNA synthetase 
WHSC1                 0.007   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.007   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.007   Wolf-Hirschhorn syndrome candidate 1 protein isoform ...
WHSC1                 0.007   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.007   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.007   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
FOLR2                 0.007   folate receptor 2 precursor 
FOLR2                 0.007   folate receptor 2 precursor 
FOLR2                 0.007   folate receptor 2 precursor 
FOLR2                 0.007   folate receptor 2 precursor 
PLCB1                 0.006   phosphoinositide-specific phospholipase C beta 1 iso...
PLCB1                 0.006   phosphoinositide-specific phospholipase C beta 1 iso...
FREM2                 0.006   FRAS1-related extracellular matrix protein 2 precurs...
ST5                   0.006   suppression of tumorigenicity 5 isoform 1 
ST5                   0.006   suppression of tumorigenicity 5 isoform 1 
ST5                   0.006   suppression of tumorigenicity 5 isoform 2 
FOLR1                 0.004   folate receptor 1 precursor 
FOLR1                 0.004   folate receptor 1 precursor 
FOLR1                 0.004   folate receptor 1 precursor 
FOLR1                 0.004   folate receptor 1 precursor 
FOLR1                 0.004   folate receptor 1 precursor 
FOLR1                 0.004   folate receptor 1 precursor 
D2HGDH                0.004   D-2-hydroxyglutarate dehydrogenase precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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