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Search of human proteins with 156766054
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156766054 PNMA-like 1 isoform b [Homo sapiens]
(378 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156766054 PNMA-like 1 isoform b [Homo sapiens] 771 0.0
gi|39780597 PNMA-like 1 isoform a [Homo sapiens] 743 0.0
gi|52486265 paraneoplastic antigen MA1 [Homo sapiens] 151 8e-37
gi|19923584 modulator of apoptosis 1 [Homo sapiens] 141 8e-34
gi|11464969 paraneoplastic antigen MA2 [Homo sapiens] 137 1e-32
gi|142976816 paraneoplastic cancer-testis-brain antigen [Homo sa... 135 6e-32
gi|156766066 paraneoplastic antigen like 5 [Homo sapiens] 132 5e-31
gi|156766064 paraneoplastic antigen like 5 [Homo sapiens] 132 5e-31
gi|24308384 paraneoplastic antigen like 5 [Homo sapiens] 132 5e-31
gi|146219841 PNMA-like 2 [Homo sapiens] 117 2e-26
gi|239746972 PREDICTED: hypothetical protein XP_002343899 [Homo ... 110 2e-24
gi|239746970 PREDICTED: hypothetical protein XP_002343898 [Homo ... 110 2e-24
gi|239746974 PREDICTED: hypothetical protein XP_002343900 [Homo ... 110 2e-24
gi|187607308 paraneoplastic antigen like 6A [Homo sapiens] 110 2e-24
gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [H... 109 5e-24
gi|169216749 PREDICTED: similar to Putative paraneoplastic antig... 109 5e-24
gi|169217313 PREDICTED: similar to paraneoplastic antigen MA1 [H... 104 1e-22
gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [H... 104 1e-22
gi|239746976 PREDICTED: similar to paraneoplastic antigen MA1 [H... 104 1e-22
gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens] 102 7e-22
gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens] 102 7e-22
gi|199559779 coiled-coil domain containing 8 [Homo sapiens] 69 9e-12
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 52 7e-07
gi|150170670 piccolo isoform 2 [Homo sapiens] 41 0.002
gi|150378539 piccolo isoform 1 [Homo sapiens] 41 0.002
gi|157738619 smoothelin-like 1 [Homo sapiens] 40 0.003
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 40 0.005
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 39 0.006
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 38 0.013
gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens] 38 0.017
>gi|156766054 PNMA-like 1 isoform b [Homo sapiens]
Length = 378
Score = 771 bits (1992), Expect = 0.0
Identities = 378/378 (100%), Positives = 378/378 (100%)
Query: 1 MSKTMAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIF 60
MSKTMAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIF
Sbjct: 1 MSKTMAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIF 60
Query: 61 VREENVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRT 120
VREENVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRT
Sbjct: 61 VREENVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRT 120
Query: 121 WEDVVRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQIIFCMDAEIRSREEARAQEAA 180
WEDVVRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQIIFCMDAEIRSREEARAQEAA
Sbjct: 121 WEDVVRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQIIFCMDAEIRSREEARAQEAA 180
Query: 181 EFEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNATEDQHEPTKPLVRRAGAKSR 240
EFEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNATEDQHEPTKPLVRRAGAKSR
Sbjct: 181 EFEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNATEDQHEPTKPLVRRAGAKSR 240
Query: 241 SRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEVGDAESMAISEPIKGSRKPCVNKEE 300
SRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEVGDAESMAISEPIKGSRKPCVNKEE
Sbjct: 241 SRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEVGDAESMAISEPIKGSRKPCVNKEE 300
Query: 301 LALKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGGHESPPKKKAVAWVSAKNPAP 360
LALKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGGHESPPKKKAVAWVSAKNPAP
Sbjct: 301 LALKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGGHESPPKKKAVAWVSAKNPAP 360
Query: 361 MRKKKKNPERFDLGDHPY 378
MRKKKKNPERFDLGDHPY
Sbjct: 361 MRKKKKNPERFDLGDHPY 378
>gi|39780597 PNMA-like 1 isoform a [Homo sapiens]
Length = 439
Score = 743 bits (1919), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MSKTMAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIF 60
MSKTMAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIF
Sbjct: 1 MSKTMAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIF 60
Query: 61 VREENVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRT 120
VREENVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRT
Sbjct: 61 VREENVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRT 120
Query: 121 WEDVVRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQIIFCMDAEIRSREEARAQEAA 180
WEDVVRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQIIFCMDAEIRSREEARAQEAA
Sbjct: 121 WEDVVRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQIIFCMDAEIRSREEARAQEAA 180
Query: 181 EFEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNATEDQHEPTKPLVRRAGAKSR 240
EFEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNATEDQHEPTKPLVRRAGAKSR
Sbjct: 181 EFEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNATEDQHEPTKPLVRRAGAKSR 240
Query: 241 SRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEVGDAESMAISEPIKGSRKPCVNKEE 300
SRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEVGDAESMAISEPIKGSRKPCVNKEE
Sbjct: 241 SRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEVGDAESMAISEPIKGSRKPCVNKEE 300
Query: 301 LALKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGGHESPPKKKAVAWVSAKNPAP 360
LALKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGGHESPPKKKAVAWVSAKNPAP
Sbjct: 301 LALKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGGHESPPKKKAVAWVSAKNPAP 360
Query: 361 MRKKKK 366
MRKKKK
Sbjct: 361 MRKKKK 366
>gi|52486265 paraneoplastic antigen MA1 [Homo sapiens]
Length = 353
Score = 151 bits (382), Expect = 8e-37
Identities = 81/155 (52%), Positives = 106/155 (68%), Gaps = 5/155 (3%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MAM LLEDWCRGM+V+ R+LLV GIP +C +AEIEETL + P YR+L ++F REE
Sbjct: 1 MAMTLLEDWCRGMDVNSQRALLVWGIPVNCDEAEIEETLQAAM-PQVSYRMLGRMFWREE 59
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRTWEDV 124
N KAAL+E+ V+ + IPRE PG+GGVW+V+ + PT DAEFL+ L+ FL EG T +DV
Sbjct: 60 NAKAALLELTGAVDYAAIPREMPGKGGVWKVLFKPPTSDAEFLERLHLFLAREGWTVQDV 119
Query: 125 VRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQ 159
R+L +PT + PE AE L +L V+Q
Sbjct: 120 ARVLGFQNPTPTPG----PEMPAEMLNYILDNVIQ 150
>gi|19923584 modulator of apoptosis 1 [Homo sapiens]
Length = 351
Score = 141 bits (356), Expect = 8e-34
Identities = 75/194 (38%), Positives = 110/194 (56%), Gaps = 2/194 (1%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
M + LLEDWCRGM+++ ++LL+ GI + C AEIEE L L+PLG YR+L ++F R+E
Sbjct: 1 MTLRLLEDWCRGMDMNPRKALLIAGISQSCSVAEIEEALQAGLAPLGEYRLLGRMFRRDE 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRTWEDV 124
N K AL+ + + + +P+E PG+GG+WRV+ + P D FL LNEFL EG T ++
Sbjct: 61 NRKVALVGLTAETSHALVPKEIPGKGGIWRVIFKPPDPDNTFLSRLNEFLAGEGMTVGEL 120
Query: 125 VRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQIIFCMD-AEIRSREEARAQEAAEFE 183
R L + +L Q PE WA L L A+ + C+ ++R + E E E
Sbjct: 121 SRALGHENGSLDPEQGMIPEMWAPMLAQALEALQPALQCLKYKKLRVFSGRESPEPGE-E 179
Query: 184 EMAAWALAAGRKVK 197
E W + +K
Sbjct: 180 EFGRWMFHTTQMIK 193
>gi|11464969 paraneoplastic antigen MA2 [Homo sapiens]
Length = 364
Score = 137 bits (346), Expect = 1e-32
Identities = 83/201 (41%), Positives = 108/201 (53%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ LLEDWCR M VD +SL+VTGIP D +AEI+E L L LG YR+L KIF ++E
Sbjct: 1 MALALLEDWCRIMSVDEQKSLMVTGIPADFEEAEIQEVLQETLKSLGRYRLLGKIFRKQE 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRTWEDV 124
N A L+E+ E ++S IP E G+GGVW+V+ + P QD EFL+ LN FL+ EG+T +
Sbjct: 61 NANAVLLELLEDTDVSAIPSEVQGKGGVWKVIFKTPNQDTEFLERLNLFLEKEGQTVSGM 120
Query: 125 VRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQIIFCMDAEIRSREEARAQEAAEFEE 184
R L + + PE A LG + Q + M A A E E
Sbjct: 121 FRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLPMRYRKLRVFSGSAVPAPEEES 180
Query: 185 MAAWALAAGRKVKKEPGLAAE 205
W A VK+ P AE
Sbjct: 181 FEVWLEQATEIVKEWPVTEAE 201
>gi|142976816 paraneoplastic cancer-testis-brain antigen [Homo
sapiens]
Length = 463
Score = 135 bits (340), Expect = 6e-32
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 14/222 (6%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
M + LL+DWCRG ++ R +L+ GIPEDCG+ E EETL LG YRV+ ++F REE
Sbjct: 1 MPLTLLQDWCRGEHLNTRRCMLILGIPEDCGEDEFEETLQEACRHLGRYRVIGRMFRREE 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRTWEDV 124
N +A L+E+ + ++ + +PRE PG+GG W V+ + D EFL LN FL+ E RT D+
Sbjct: 61 NAQAILLELAQDIDYALLPREIPGKGGPWEVIVKPRNSDGEFLNRLNRFLEEERRTVSDM 120
Query: 125 VRLLQLNHPTLSQNQHQPPE--NWAEALGVLLGAVVQIIFCMDAEIRSREEARAQEAAEF 182
R+L + + PE WA+ LG + +++ + + + S A F
Sbjct: 121 NRVLGSDTNCSAPRVTISPEFWTWAQTLGAAVQPLLEQMLYRELRVFSGNTISIPGALAF 180
Query: 183 --------EEMAAWALAAGRKVKK----EPGLAAEVGSALKA 212
E + W + G K ++ G A +V S L+A
Sbjct: 181 DAWLEHTTEMLQMWQVPEGEKRRRLMECLRGPALQVVSGLRA 222
>gi|156766066 paraneoplastic antigen like 5 [Homo sapiens]
Length = 448
Score = 132 bits (332), Expect = 5e-31
Identities = 61/124 (49%), Positives = 83/124 (66%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ LLEDWC+GM++D ++LL+ GIP +C + EI++T+ L PL YRVL ++F RE+
Sbjct: 1 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRTWEDV 124
N KA IE+ + VN +T+P PG+GG W VV + D EFL LN FL EGR+ DV
Sbjct: 61 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV 120
Query: 125 VRLL 128
R L
Sbjct: 121 ARAL 124
>gi|156766064 paraneoplastic antigen like 5 [Homo sapiens]
Length = 448
Score = 132 bits (332), Expect = 5e-31
Identities = 61/124 (49%), Positives = 83/124 (66%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ LLEDWC+GM++D ++LL+ GIP +C + EI++T+ L PL YRVL ++F RE+
Sbjct: 1 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRTWEDV 124
N KA IE+ + VN +T+P PG+GG W VV + D EFL LN FL EGR+ DV
Sbjct: 61 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV 120
Query: 125 VRLL 128
R L
Sbjct: 121 ARAL 124
>gi|24308384 paraneoplastic antigen like 5 [Homo sapiens]
Length = 448
Score = 132 bits (332), Expect = 5e-31
Identities = 61/124 (49%), Positives = 83/124 (66%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ LLEDWC+GM++D ++LL+ GIP +C + EI++T+ L PL YRVL ++F RE+
Sbjct: 1 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRTWEDV 124
N KA IE+ + VN +T+P PG+GG W VV + D EFL LN FL EGR+ DV
Sbjct: 61 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLKDEGRSMTDV 120
Query: 125 VRLL 128
R L
Sbjct: 121 ARAL 124
>gi|146219841 PNMA-like 2 [Homo sapiens]
Length = 635
Score = 117 bits (292), Expect = 2e-26
Identities = 65/153 (42%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MAM+LL+DWCR ++VD HR+LLVTGIPE QA++E L L PLG +R+ + + E
Sbjct: 1 MAMSLLQDWCRSLDVDAHRALLVTGIPEGLEQADVEAVLQPTLLPLGTFRLRHMKALMNE 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRTW-ED 123
+AAL+E E VN + IPRE PG+ GVWRV+ +D QD L+ + L +G T +
Sbjct: 61 KAQAALVEFVEDVNHAAIPREIPGKDGVWRVLWKDRAQDTRVLRQMRRLLLDDGPTQAAE 120
Query: 124 VVRLLQLNHPTLSQNQHQPPENWAEALGVLLGA 156
+ P S+ Q Q G LLGA
Sbjct: 121 AGTPGEAPTPPASETQAQDSGEVTGQAGSLLGA 153
>gi|239746972 PREDICTED: hypothetical protein XP_002343899 [Homo
sapiens]
Length = 399
Score = 110 bits (276), Expect = 2e-24
Identities = 73/226 (32%), Positives = 106/226 (46%), Gaps = 24/226 (10%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ +L+DWCR M V+ R LL+ GIPEDC AE +E+L L P+G + VL K F E+
Sbjct: 1 MAVTMLQDWCRWMGVNARRGLLILGIPEDCDDAEFQESLEAALRPMGHFTVLGKAFREED 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEF--LKNLNEFLDAEGRTWE 122
N AAL+E+ VN + +PRE PG GG W VV EF L + F + EG+ E
Sbjct: 61 NATAALVELDREVNYALVPREIPGTGGPWNVVFVPRCSGEEFLGLGRVFHFPEQEGQMVE 120
Query: 123 DVVRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQIIFCMDAEIRSREEARAQEAAEF 182
V L + + W ++G + V+ + C + S + A F
Sbjct: 121 SVAGALGVGLRRVC---------WLRSIGQAVQPWVEAVRCQSLGVFSGRDQPAPGEESF 171
Query: 183 --------EEMAAWALAAGRKVKKE-----PGLAAEVGSALKAETP 215
E + W + R+ ++ G A ++ AL AE P
Sbjct: 172 EVWLDHTTEMLHVWQGVSERERRRRLLEGLRGTALQLVHALLAENP 217
>gi|239746970 PREDICTED: hypothetical protein XP_002343898 [Homo
sapiens]
Length = 399
Score = 110 bits (276), Expect = 2e-24
Identities = 73/226 (32%), Positives = 106/226 (46%), Gaps = 24/226 (10%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ +L+DWCR M V+ R LL+ GIPEDC AE +E+L L P+G + VL K F E+
Sbjct: 1 MAVTMLQDWCRWMGVNARRGLLILGIPEDCDDAEFQESLEAALRPMGHFTVLGKAFREED 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEF--LKNLNEFLDAEGRTWE 122
N AAL+E+ VN + +PRE PG GG W VV EF L + F + EG+ E
Sbjct: 61 NATAALVELDREVNYALVPREIPGTGGPWNVVFVPRCSGEEFLGLGRVFHFPEQEGQMVE 120
Query: 123 DVVRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQIIFCMDAEIRSREEARAQEAAEF 182
V L + + W ++G + V+ + C + S + A F
Sbjct: 121 SVAGALGVGLRRVC---------WLRSIGQAVQPWVEAVRCQSLGVFSGRDQPAPGEESF 171
Query: 183 --------EEMAAWALAAGRKVKKE-----PGLAAEVGSALKAETP 215
E + W + R+ ++ G A ++ AL AE P
Sbjct: 172 EVWLDHTTEMLHVWQGVSERERRRRLLEGLRGTALQLVHALLAENP 217
>gi|239746974 PREDICTED: hypothetical protein XP_002343900 [Homo
sapiens]
Length = 399
Score = 110 bits (275), Expect = 2e-24
Identities = 65/160 (40%), Positives = 86/160 (53%), Gaps = 9/160 (5%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ +L+DWCR M V+ R LL+ GIPEDC AE +E+L L P+G + VL K+F E+
Sbjct: 1 MAVTMLQDWCRWMGVNARRGLLILGIPEDCDDAEFQESLEAALRPMGHFTVLGKVFREED 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEF--LKNLNEFLDAEGRTWE 122
N AAL+E+ VN + +PRE PG GG W VV EF L + F + EG+ E
Sbjct: 61 NATAALVELDREVNYALVPREIPGTGGPWNVVFVPRCSGEEFLGLGRVFHFPEQEGQMVE 120
Query: 123 DVVRLL--QLNHPTLSQNQHQPPENWAEA-----LGVLLG 155
V L L ++ Q + W EA LGV G
Sbjct: 121 SVAGALGVGLRRVCWLRSIGQAVQPWVEAVRYQSLGVFSG 160
>gi|187607308 paraneoplastic antigen like 6A [Homo sapiens]
Length = 399
Score = 110 bits (275), Expect = 2e-24
Identities = 65/160 (40%), Positives = 86/160 (53%), Gaps = 9/160 (5%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ +L+DWCR M V+ R LL+ GIPEDC AE +E+L L P+G + VL K+F E+
Sbjct: 1 MAVTMLQDWCRWMGVNARRGLLILGIPEDCDDAEFQESLEAALRPMGHFTVLGKVFREED 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEF--LKNLNEFLDAEGRTWE 122
N AAL+E+ VN + +PRE PG GG W VV EF L + F + EG+ E
Sbjct: 61 NATAALVELDREVNYALVPREIPGTGGPWNVVFVPRCSGEEFLGLGRVFHFPEQEGQMVE 120
Query: 123 DVVRLL--QLNHPTLSQNQHQPPENWAEA-----LGVLLG 155
V L L ++ Q + W EA LGV G
Sbjct: 121 SVAGALGVGLRRVCWLRSIGQAVQPWVEAVRYQSLGVFSG 160
>gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [Homo
sapiens]
Length = 340
Score = 109 bits (272), Expect = 5e-24
Identities = 51/102 (50%), Positives = 68/102 (66%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ +L DWCR M V+ RSLL+ IP+DC + E +E + LSPLG YRVL K+F +E
Sbjct: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEF 106
+AAL+E EG+N S IPR+ G+GG W+V+ DAEF
Sbjct: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
>gi|169216749 PREDICTED: similar to Putative paraneoplastic
antigen-like protein 6B-like protein [Homo sapiens]
Length = 340
Score = 109 bits (272), Expect = 5e-24
Identities = 51/102 (50%), Positives = 68/102 (66%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ +L DWCR M V+ RSLL+ IP+DC + E +E + LSPLG YRVL K+F +E
Sbjct: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEF 106
+AAL+E EG+N S IPR+ G+GG W+V+ DAEF
Sbjct: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
>gi|169217313 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 601
Score = 104 bits (260), Expect = 1e-22
Identities = 47/95 (49%), Positives = 66/95 (69%)
Query: 2 SKTMAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFV 61
S +A+ +L+DWCR M V+ RSLL+ IP+DC + E +E + LSPLG YRVL K+F
Sbjct: 188 SSAIALAMLQDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFR 247
Query: 62 REENVKAALIEVGEGVNLSTIPREFPGRGGVWRVV 96
+E +AAL+E EG+N S IPR+ G+GG W+V+
Sbjct: 248 KELGARAALVEFAEGLNQSLIPRQIAGKGGPWKVI 282
>gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 541
Score = 104 bits (260), Expect = 1e-22
Identities = 47/95 (49%), Positives = 66/95 (69%)
Query: 2 SKTMAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFV 61
S +A+ +L+DWCR M V+ RSLL+ IP+DC + E +E + LSPLG YRVL K+F
Sbjct: 128 SSAIALAMLQDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFR 187
Query: 62 REENVKAALIEVGEGVNLSTIPREFPGRGGVWRVV 96
+E +AAL+E EG+N S IPR+ G+GG W+V+
Sbjct: 188 KELGARAALVEFAEGLNQSLIPRQIAGKGGPWKVI 222
>gi|239746976 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 601
Score = 104 bits (260), Expect = 1e-22
Identities = 47/95 (49%), Positives = 66/95 (69%)
Query: 2 SKTMAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFV 61
S +A+ +L+DWCR M V+ RSLL+ IP+DC + E +E + LSPLG YRVL K+F
Sbjct: 188 SSAIALAMLQDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFR 247
Query: 62 REENVKAALIEVGEGVNLSTIPREFPGRGGVWRVV 96
+E +AAL+E EG+N S IPR+ G+GG W+V+
Sbjct: 248 KELGARAALVEFAEGLNQSLIPRQIAGKGGPWKVI 282
>gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 102 bits (253), Expect = 7e-22
Identities = 47/92 (51%), Positives = 61/92 (66%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ +L DWCR M + RSLL+ GIP+DC + E +E + LSPLG YRVL K F +E
Sbjct: 1 MALAMLRDWCRWMGANAERSLLILGIPDDCKEHEFQEAVRAALSPLGRYRVLTKHFRKEL 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVV 96
KAAL+E E +N S IP + PG GG W+V+
Sbjct: 61 GAKAALVEFAEYLNRSLIPHQIPGNGGPWKVI 92
>gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 102 bits (253), Expect = 7e-22
Identities = 47/92 (51%), Positives = 61/92 (66%)
Query: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
MA+ +L DWCR M + RSLL+ GIP+DC + E +E + LSPLG YRVL K F +E
Sbjct: 1 MALAMLRDWCRWMGANAERSLLILGIPDDCKEHEFQEAVRAALSPLGRYRVLTKHFRKEL 60
Query: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVV 96
KAAL+E E +N S IP + PG GG W+V+
Sbjct: 61 GAKAALVEFAEYLNRSLIPHQIPGNGGPWKVI 92
>gi|199559779 coiled-coil domain containing 8 [Homo sapiens]
Length = 538
Score = 68.6 bits (166), Expect = 9e-12
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 70 LIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEFLKNLNEFLDAEGRTWEDVVRLLQ 129
++++GE V+ IPRE GGVWRV+ + T++AEF + L +FL+ EGRT EDV R+++
Sbjct: 1 MLQIGEDVDYLLIPREVRLAGGVWRVISKPATKEAEFRERLTQFLEEEGRTLEDVARIME 60
Query: 130 LNHPTLSQNQHQPPE 144
+ P Q +P E
Sbjct: 61 KSTPHPPQPPKKPKE 75
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 52.4 bits (124), Expect = 7e-07
Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 25/212 (11%)
Query: 166 AEIRSREEARAQEAAEFEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNATEDQH 225
AE++S E+A++ +E A A K+E AEV S KA++P A E+
Sbjct: 542 AEVKSPEKAKSPA----KEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSP----AKEEAK 593
Query: 226 EPTKPLVRRAGAKSRSRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEVGDA---ESM 282
P A AKS + K K + K P + S A ++ PE + E
Sbjct: 594 SP-------AEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEA 646
Query: 283 AISEPIKGSRKPCVNKEELALKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGGHE 342
E K K E A K K K P + +AEA+SP A ++ +
Sbjct: 647 KSPEKAKSPEKEEAKSPEKA--KSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEA-K 703
Query: 343 SPPKKKAVAWVSAKNP----APMRKKKKNPER 370
SP K K+ AK+P +P++++ K PE+
Sbjct: 704 SPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEK 735
Score = 39.7 bits (91), Expect = 0.005
Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 36/208 (17%)
Query: 171 REEARAQEAAE--FEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNATEDQHEPT 228
+EEA++ E A+ +E A A VK+E + S +K E + A + T
Sbjct: 699 KEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKT 758
Query: 229 ---KPLVRRAGAKSRSRRKKQK-----KNSRQEAVPWKKPKGINSNSTANLEDPEVGDAE 280
K + AK +R K K+ +E V K P+ S + + PE +
Sbjct: 759 LDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEV--KSPEKAKSPLKEDAKAPEKEIPK 816
Query: 281 SMAISEPIKGSRKPCVNKEELALKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGG 340
+ P+K KP +E+ +K EPP+ A E +E +D
Sbjct: 817 KEEVKSPVKEEEKP----QEVKVK------------EPPKKAEEEKAPATPKTEEKKDSK 860
Query: 341 HESPPKKKAVAWVSAKNPAPMRKKKKNP 368
E PKK+A P P ++KK P
Sbjct: 861 KEEAPKKEA--------PKPKVEEKKEP 880
Score = 33.5 bits (75), Expect = 0.32
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 19/221 (8%)
Query: 165 DAEIRSREEARAQEAAEFEEMAAWALAAGRKV-KKEPGLAAEVGSALKAETPNNWNA--- 220
+A+ ++EEAR+ A +F E A + K +K E A + E P
Sbjct: 765 EAKTPAKEEARSP-ADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSP 823
Query: 221 TEDQHEPTKPLVRRAGAKSRSRRK------KQKKNSRQEAVPWK---KPKGINSNSTANL 271
+++ +P + V+ K+ + ++KK+S++E P K KPK + +
Sbjct: 824 VKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPK-VEEKKEPAV 882
Query: 272 EDPEVGDAESMAISEPIKGSRKPCVNKEELALKKPMAKCAWKGPREPPQDARAEAESPGG 331
E P+ E A E + +K ++E K + + A P+E + A+ E +
Sbjct: 883 EKPKESKVE--AKKEEAEDKKKVPTPEKEAPAKVEVKEDA--KPKEKTEVAKKEPDDAKA 938
Query: 332 ASESDQDGGHESPPKKKAVAWVSAKNPAPMRKKKKNPERFD 372
S E+ P+KK AK P K + + D
Sbjct: 939 KEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDD 979
Score = 33.5 bits (75), Expect = 0.32
Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 28/217 (12%)
Query: 165 DAEIRSREEARAQEAAEFEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNATEDQ 224
+ EI +EE ++ E + KVK+ P A E + +T ++ +++
Sbjct: 811 EKEIPKKEEVKSPVKEEEKPQEV-------KVKEPPKKAEEEKAPATPKTEEKKDSKKEE 863
Query: 225 ---HEPTKPLVRRAGAKSRSRRKKQKKNSRQEAVPWKK----PKGINSNSTANLEDPEVG 277
E KP V + + K+ K +++E KK P+ ED +
Sbjct: 864 APKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPK 923
Query: 278 DAESMAISEP----IKGSRKPCVNKEELALKKPMAKCAWKGPREPPQDARAEAESPGGAS 333
+ +A EP K KP KE KK + K P E P + EA+ A
Sbjct: 924 EKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKP---KTEAK----AK 976
Query: 334 ESDQDGGHESPPKKKAVAWVSAKNPAPMRKKKKNPER 370
E D+ E P K KA + K+ + +K K PE+
Sbjct: 977 EDDKTLSKE-PSKPKAEK--AEKSSSTDQKDSKPPEK 1010
Score = 32.7 bits (73), Expect = 0.55
Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 31/206 (15%)
Query: 167 EIRSREEARAQEAAEFEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNATEDQHE 226
+++S E+ + E +E E + +V +E E A + E E++ E
Sbjct: 437 KVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEV-TEEEEKEAKEEEGKEEEGGEEEEAE 495
Query: 227 PTKPLVRRAGAKSRSRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEVGDAESMAISE 286
+ + A+ + +K+ K+ +E + S A + PE +A+S A +
Sbjct: 496 GGEEETKSPPAEEAASPEKEAKSPVKE----------EAKSPAEAKSPEKEEAKSPAEVK 545
Query: 287 PIKGSRKPCVNKEELALKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGGHESPPK 346
+ ++ P KEE + PP+ E E +E +SP K
Sbjct: 546 SPEKAKSPA--KEEA--------------KSPPEAKSPEKEEAKSPAEVKSPEKAKSPAK 589
Query: 347 KKAVAWVSAKNP----APMRKKKKNP 368
++A + AK+P +P++++ K+P
Sbjct: 590 EEAKSPAEAKSPEKAKSPVKEEAKSP 615
Score = 30.4 bits (67), Expect = 2.7
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 255 VPWKKPKG----------INSNSTANLEDPEVGDAESMAISEPIKGSR--KPCVNKEELA 302
+P+ P+G I S ++ E + E++ + E + ++ + +EE
Sbjct: 418 IPFSLPEGLPKIPSVSTHIKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKE 477
Query: 303 LKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGGHESPPKKKAVAWVSAKNPAPMR 362
K+ K G E + E +SP + + +SP K++A + AK+P
Sbjct: 478 AKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEE 537
Query: 363 KKK----KNPER 370
K K+PE+
Sbjct: 538 AKSPAEVKSPEK 549
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 40.8 bits (94), Expect = 0.002
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 12/155 (7%)
Query: 212 AETPNNWNATEDQHEPTKPLVRRAGAKSRSRRKKQKKNSRQEAVPWKKPKGINSNSTANL 271
A+ P Q KPL ++ G +S ++ K Q+ P K P A
Sbjct: 402 AQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIP--------AQQ 453
Query: 272 EDPEVGDAESMAISEP---IKGSRKPCVNKEELALKKPMAKCAWKGPREPPQDARAEAES 328
P A+ ++P + G KP + A P + K P + P + +
Sbjct: 454 AGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQ 513
Query: 329 PGGASESDQDGGHESPPKKK-AVAWVSAKNPAPMR 362
PG A S Q G PP ++ A SA+ P+P +
Sbjct: 514 PGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAK 548
Score = 33.5 bits (75), Expect = 0.32
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 20/168 (11%)
Query: 207 GSALKAETPNNWNATEDQHEPTKPLVRRAGAKSRSRRKKQKKNSRQEAVPWKKPKGIN-- 264
G ++K P+ Q P KP ++ G +K+ A P +P G+
Sbjct: 291 GESVKPSLPSPSKPPIQQPTPGKPPAQQPG---------HEKSQPGPAKPPAQPSGLTKP 341
Query: 265 -SNSTANLEDPEVGDAESMAISEPIKGSRKPCVNKEELALKKPMAKCAWKGPR---EPPQ 320
+ ++ P + ++P+ ++ P ++ +KP ++ GP+ +PP
Sbjct: 342 LAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPA---QQTGSEKPSSE--QPGPKALAQPPG 396
Query: 321 DARAEAESPGGASESDQDGGHESPPKKKAVAWVSAKNPAPMRKKKKNP 368
+ A+ PG A Q G P ++ AK P P + + P
Sbjct: 397 VGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQP 444
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 40.8 bits (94), Expect = 0.002
Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 12/155 (7%)
Query: 212 AETPNNWNATEDQHEPTKPLVRRAGAKSRSRRKKQKKNSRQEAVPWKKPKGINSNSTANL 271
A+ P Q KPL ++ G +S ++ K Q+ P K P A
Sbjct: 402 AQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIP--------AQQ 453
Query: 272 EDPEVGDAESMAISEP---IKGSRKPCVNKEELALKKPMAKCAWKGPREPPQDARAEAES 328
P A+ ++P + G KP + A P + K P + P + +
Sbjct: 454 AGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQ 513
Query: 329 PGGASESDQDGGHESPPKKK-AVAWVSAKNPAPMR 362
PG A S Q G PP ++ A SA+ P+P +
Sbjct: 514 PGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAK 548
Score = 33.5 bits (75), Expect = 0.32
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 20/168 (11%)
Query: 207 GSALKAETPNNWNATEDQHEPTKPLVRRAGAKSRSRRKKQKKNSRQEAVPWKKPKGIN-- 264
G ++K P+ Q P KP ++ G +K+ A P +P G+
Sbjct: 291 GESVKPSLPSPSKPPIQQPTPGKPPAQQPG---------HEKSQPGPAKPPAQPSGLTKP 341
Query: 265 -SNSTANLEDPEVGDAESMAISEPIKGSRKPCVNKEELALKKPMAKCAWKGPR---EPPQ 320
+ ++ P + ++P+ ++ P ++ +KP ++ GP+ +PP
Sbjct: 342 LAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPA---QQTGSEKPSSE--QPGPKALAQPPG 396
Query: 321 DARAEAESPGGASESDQDGGHESPPKKKAVAWVSAKNPAPMRKKKKNP 368
+ A+ PG A Q G P ++ AK P P + + P
Sbjct: 397 VGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQP 444
>gi|157738619 smoothelin-like 1 [Homo sapiens]
Length = 512
Score = 40.4 bits (93), Expect = 0.003
Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 9/207 (4%)
Query: 164 MDAEIRSREEARAQEAAEFEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNATED 223
M AE++ + E + A A ++KKE G K ET
Sbjct: 80 MSAELQGEANGLDEVKVESQREAGGKEDAEAELKKEDGE--------KEETTVGSQEMTG 131
Query: 224 QHEPTKPLVRRAGAKSRSRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEVGDAESMA 283
+ E TK + A K + +++K +EA P K ++ V + ++
Sbjct: 132 RKEETKSEPKEAEEKESTLASEKQKAEEKEAKPESGQKADANDRDKPEPKATVEEEDAKT 191
Query: 284 ISEPIKGSRKPCVNKEELALKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGGHES 343
S+ G RK C + + AK A +A+AE + P G E+ E+
Sbjct: 192 ASQEETGQRKECSTEPKEKATDEEAK-AESQKAVVEDEAKAEPKEPDGKEEAKHGAKEEA 250
Query: 344 PPKKKAVAWVSAKNPAPMRKKKKNPER 370
K++A A+ +P +++++ E+
Sbjct: 251 DAKEEAEDAEEAEPGSPSEEQEQDVEK 277
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 39.7 bits (91), Expect = 0.005
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 7/146 (4%)
Query: 224 QHEPTKPLVRRAGAKSRSRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEVGDAESMA 283
Q + P VRR + S RR+ ++R + P+ A+ P ++
Sbjct: 692 QTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAAS---PSPQSVRRVS 748
Query: 284 ISEPIKGSRKPCVNKEELA---LKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGG 340
S + GS +P K ++ W P P + A++ SP SDQ+GG
Sbjct: 749 SSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWS-PAVPVKKAKSPTPSPSPPRNSDQEGG 807
Query: 341 HESPPKKKAVAWVSAKNPAPMRKKKK 366
+ KKK K +K KK
Sbjct: 808 GKKKKKKKDKKHKKDKKHKKHKKHKK 833
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 39.3 bits (90), Expect = 0.006
Identities = 63/279 (22%), Positives = 106/279 (37%), Gaps = 44/279 (15%)
Query: 102 QDAEFLKNLNEFLDAEGRTWEDVVRLLQLNHPTLSQNQHQPPENWAEALGVLLGAVVQII 161
+D + + N+F A G T +D L+ + + PE +A G + +
Sbjct: 23 RDNQLSEVANKFAKATGATQQDANASSLLDIYSFWLKSAKVPERKLQANGPVAKKAKKKA 82
Query: 162 FCMDAEIRSREEARAQEAAEFEEMAAWALAAGRKVKKEPGLAAEVGSALKAETPNNWNAT 221
D+E S EE Q A A ++V PG AA A +E+ ++ ++
Sbjct: 83 SSSDSEDSSEEEEEVQGPP-----AKKAAVPAKRVGLPPGKAA----AKASESSSSEESS 133
Query: 222 EDQHEPTKPLVRRAGAKSRSRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEVGDAES 281
+D E + K + +K K ++ P KK K +S D++S
Sbjct: 134 DDDDEEDQ--------KKQPVQKGVKPQAKAAKAPPKKAKSSDS------------DSDS 173
Query: 282 MAISEPIKGSRKPCVNKEELALKKPMAKCAWKGPREPPQ--DARAEAESPGGASESDQDG 339
+ EP K ++KP + + K K K R P+ + +A + S +S S D
Sbjct: 174 SSEDEPPK-NQKPKITPVTV---KAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDD 229
Query: 340 GHE---------SPPKKKAVAWVSAKNPAPMRKKKKNPE 369
E + PKK+ VA K +K + E
Sbjct: 230 SEEEKAAATPKKTVPKKQVVAKAPVKAATTPTRKSSSSE 268
Score = 35.4 bits (80), Expect = 0.085
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 16/160 (10%)
Query: 220 ATEDQHEPTKPLVRRAGAKSRS----RRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPE 275
AT + P K +V +A K+ + + + +S E KKP +++ P
Sbjct: 237 ATPKKTVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYSSVPPPS 296
Query: 276 VGDAESMAISEPIKGS---RKPCVNKEELA---------LKKPMAKCAWKGPREPPQDAR 323
+ ++P K + ++P + E+ + KKP K P A+
Sbjct: 297 APPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKATTKPPPAK 356
Query: 324 AEAESPGGASESDQDGGHESPPKKKAVAWVSAKNPAPMRK 363
AES +S+SD E+P K S+ PA K
Sbjct: 357 KAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTK 396
Score = 28.9 bits (63), Expect = 8.0
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 4/123 (3%)
Query: 229 KPLVRRAGAKSRSRRKKQKKNSR-QEAVPWKKPKGINSNSTANLEDPEV--GDAESMAIS 285
K L R+A + S + + ++ V KPK + + +L + G +S + S
Sbjct: 415 KLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKA-TAKAALSLPAKQAPQGSRDSSSDS 473
Query: 286 EPIKGSRKPCVNKEELALKKPMAKCAWKGPREPPQDARAEAESPGGASESDQDGGHESPP 345
+ + + KKP P +P + +AES +S D E
Sbjct: 474 DSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKL 533
Query: 346 KKK 348
K K
Sbjct: 534 KGK 536
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 38.1 bits (87), Expect = 0.013
Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 18/166 (10%)
Query: 217 NWNATEDQHEPTKPLVRRAGAKSRSRRKKQKKNSRQEAVPWKKPKGINSNSTANLEDPEV 276
NW ++ + +K R R+KK+KK S + + +S+S + E+ +
Sbjct: 68 NWKKELEKSREKLLSGNESSSKKRERKKKRKKKSCRSSSSSSSSDSSSSSSDSEDEEKKQ 127
Query: 277 GDAESMAISEPIKGS---------------RKPCVNKEELALKKPMAKCAWKGPREPPQD 321
G + K S +K +K+E +K + + K + P D
Sbjct: 128 GKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDD 187
Query: 322 ARAEAESPGGASESDQDGGHESPPKKKAVAWVSAKNPAPMRKKKKN 367
+ES +SESD + ++ K++ AK +KKK++
Sbjct: 188 KPLSSES---SSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQH 230
>gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens]
Length = 1041
Score = 37.7 bits (86), Expect = 0.017
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 188 WALAAGRKVKKEPGLAAEVGSALKAETPNNWNATEDQHEPTKPLVRRAGAKSRSRRKK-- 245
W + V ++P AAE + E ++ ED E ++ V RAG+ + +RKK
Sbjct: 67 WNKVPRKAVVEKPARAAEREARALLEKNRSYRLLEDSEESSEETVSRAGSSLQKKRKKRK 126
Query: 246 ---QKKNSRQEAVPWKKPKGINSNSTANLEDPEVGD 278
+K+ +E +K K S E PE D
Sbjct: 127 HLRKKREEEEEEEASEKGKKKTGGSKQQTEKPESED 162
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,346,373
Number of Sequences: 37866
Number of extensions: 791074
Number of successful extensions: 3397
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 3145
Number of HSP's gapped (non-prelim): 421
length of query: 378
length of database: 18,247,518
effective HSP length: 104
effective length of query: 274
effective length of database: 14,309,454
effective search space: 3920790396
effective search space used: 3920790396
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.