Search of human proteins with 11038676

Search of human proteins with 11038676

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11038676 CD79B antigen isoform 2 precursor [Homo sapiens]
         (125 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11038676 CD79B antigen isoform 2 precursor [Homo sapiens]          249   4e-67
gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]          173   3e-44
gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]          173   3e-44
gi|11038672 CD79A antigen isoform 2 precursor [Homo sapiens]           34   0.025
gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens]            34   0.025
gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]        29   1.1  
gi|157427675 ADAM metallopeptidase with thrombospondin type 1 mo...    28   1.4  
gi|7662150 hypothetical protein LOC9917 [Homo sapiens]                 27   3.1  
gi|193083163 roundabout, axon guidance receptor, homolog 2 isofo...    27   3.1  
gi|61888896 roundabout, axon guidance receptor, homolog 2 isofor...    27   3.1  
gi|4506303 protein tyrosine phosphatase, receptor type, A isofor...    27   4.0  
gi|157266326 oculocutaneous albinism II [Homo sapiens]                 27   5.2  
gi|221316595 cadherin 17 precursor [Homo sapiens]                      27   5.2  
gi|221316593 cadherin 17 precursor [Homo sapiens]                      27   5.2  
gi|197333856 hypothetical protein LOC286006 [Homo sapiens]             27   5.2  
gi|32699019 hypothetical protein LOC286006 [Homo sapiens]              27   5.2  
gi|100913030 solute carrier family 26 member 2 [Homo sapiens]          26   8.9  
gi|18450371 protein tyrosine phosphatase, receptor type, A isofo...    26   8.9  
gi|18450369 protein tyrosine phosphatase, receptor type, A isofo...    26   8.9  

>gi|11038676 CD79B antigen isoform 2 precursor [Homo sapiens]
          Length = 125

 Score =  249 bits (636), Expect = 4e-67
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKGFSTLAQLKQRNTLKDGIIMI 60
           MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKGFSTLAQLKQRNTLKDGIIMI
Sbjct: 1   MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKGFSTLAQLKQRNTLKDGIIMI 60

Query: 61  QTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGE 120
           QTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGE
Sbjct: 61  QTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGE 120

Query: 121 HPGQE 125
           HPGQE
Sbjct: 121 HPGQE 125


>gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
          Length = 230

 Score =  173 bits (438), Expect = 3e-44
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 40  GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ 99
           GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ
Sbjct: 145 GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ 204

Query: 100 TATYEDIVTLRTGEVKWSVGEHPGQE 125
           TATYEDIVTLRTGEVKWSVGEHPGQE
Sbjct: 205 TATYEDIVTLRTGEVKWSVGEHPGQE 230



 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 40/41 (97%), Positives = 40/41 (97%), Gaps = 1/41 (2%)

Query: 1  MARLALSPVPSHWMVALLLLLS-AEPVPAARSEDRYRNPKG 40
          MARLALSPVPSHWMVALLLLLS AEPVPAARSEDRYRNPKG
Sbjct: 1  MARLALSPVPSHWMVALLLLLSAAEPVPAARSEDRYRNPKG 41


>gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]
          Length = 229

 Score =  173 bits (438), Expect = 3e-44
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 40  GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ 99
           GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ
Sbjct: 144 GFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ 203

Query: 100 TATYEDIVTLRTGEVKWSVGEHPGQE 125
           TATYEDIVTLRTGEVKWSVGEHPGQE
Sbjct: 204 TATYEDIVTLRTGEVKWSVGEHPGQE 229



 Score = 83.2 bits (204), Expect = 5e-17
 Identities = 40/40 (100%), Positives = 40/40 (100%)

Query: 1  MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKG 40
          MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKG
Sbjct: 1  MARLALSPVPSHWMVALLLLLSAEPVPAARSEDRYRNPKG 40


>gi|11038672 CD79A antigen isoform 2 precursor [Homo sapiens]
          Length = 188

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 9/62 (14%)

Query: 54  KDGIIMIQTLLIILFIIVPIFLLLDK---DDSKAGM------EEDHTYEGLDIDQTATYE 104
           K+ II  + ++++   +VP  LLL +    + K G+      E+++ YEGL++D  + YE
Sbjct: 103 KNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYE 162

Query: 105 DI 106
           DI
Sbjct: 163 DI 164


>gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens]
          Length = 226

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 9/62 (14%)

Query: 54  KDGIIMIQTLLIILFIIVPIFLLLDK---DDSKAGM------EEDHTYEGLDIDQTATYE 104
           K+ II  + ++++   +VP  LLL +    + K G+      E+++ YEGL++D  + YE
Sbjct: 141 KNRIITAEGIILLFCAVVPGTLLLFRKRWQNEKLGLDAGDEYEDENLYEGLNLDDCSMYE 200

Query: 105 DI 106
           DI
Sbjct: 201 DI 202


>gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]
          Length = 116

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 56  GIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEED 89
           G++++  LLIIL +++ +FL    D S A   +D
Sbjct: 74  GLVVVGVLLIILIVLLVVFLPQSSDSSSAPRTQD 107


>gi|157427675 ADAM metallopeptidase with thrombospondin type 1
          motif, 4 preproprotein [Homo sapiens]
          Length = 837

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 4  LALSPVPSHWMVALLLLLSAEPVPAAR 30
          L L  VP  W+V LLLLL A  +P+AR
Sbjct: 24 LLLPIVPLSWLVWLLLLLLASLLPSAR 50


>gi|7662150 hypothetical protein LOC9917 [Homo sapiens]
          Length = 409

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 46 QLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTY 92
          +LKQR       +++  +L+++FI   +FL+ + D S A  E+   +
Sbjct: 2  KLKQR-------VVLLAILLVIFIFTKVFLIDNLDTSAANREDQRAF 41


>gi|193083163 roundabout, axon guidance receptor, homolog 2 isoform
           ROBO2a [Homo sapiens]
          Length = 1394

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 81  DSKAGMEEDHTYE--GLDIDQTATYEDIVTLRTGEVKWS 117
           D +A ++E  T +   L I  T TY  + T  +GE  WS
Sbjct: 478 DPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWS 516


>gi|61888896 roundabout, axon guidance receptor, homolog 2 isoform
           ROBO2b [Homo sapiens]
          Length = 1378

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 81  DSKAGMEEDHTYE--GLDIDQTATYEDIVTLRTGEVKWS 117
           D +A ++E  T +   L I  T TY  + T  +GE  WS
Sbjct: 462 DPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWS 500


>gi|4506303 protein tyrosine phosphatase, receptor type, A isoform 1
           precursor [Homo sapiens]
          Length = 802

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 38  PKGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAG 85
           P G S     +    +   ++ + +LL+I+FII+ +++L  K   +AG
Sbjct: 137 PSGNSDSKDRRDETPIIAVMVALSSLLVIVFIIIVLYMLRFKKYKQAG 184


>gi|157266326 oculocutaneous albinism II [Homo sapiens]
          Length = 838

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 9/34 (26%), Positives = 23/34 (67%)

Query: 42  STLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFL 75
           + + +L++++ + DGI++ + L ++ F+I   FL
Sbjct: 606 TNIQELQKKHRISDGILLAKCLTVLGFVIFMFFL 639


>gi|221316595 cadherin 17 precursor [Homo sapiens]
          Length = 832

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 58  IMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYE 93
           I++ TLL+I  I+  +F+ + KD  K  +E     E
Sbjct: 791 ILLTTLLVIGIILAVVFIRIKKDKGKDNVESAQASE 826


>gi|221316593 cadherin 17 precursor [Homo sapiens]
          Length = 832

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 58  IMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYE 93
           I++ TLL+I  I+  +F+ + KD  K  +E     E
Sbjct: 791 ILLTTLLVIGIILAVVFIRIKKDKGKDNVESAQASE 826


>gi|197333856 hypothetical protein LOC286006 [Homo sapiens]
          Length = 131

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 57  IIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEV 114
           I++I +L ++ F+I   FL++   +    +    T EG DID      +++  R  ++
Sbjct: 69  IVLIVSLALVFFVI---FLIVQTGNKMDDVSRRLTAEGKDIDDLKRINNMIVKRLNQL 123


>gi|32699019 hypothetical protein LOC286006 [Homo sapiens]
          Length = 131

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 57  IIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEV 114
           I++I +L ++ F+I   FL++   +    +    T EG DID      +++  R  ++
Sbjct: 69  IVLIVSLALVFFVI---FLIVQTGNKMDDVSRRLTAEGKDIDDLKRINNMIVKRLNQL 123


>gi|100913030 solute carrier family 26 member 2 [Homo sapiens]
          Length = 739

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 51  NTLKDGIIMIQTLLIILFIIVPIFLLLDK 79
           +T   G++    LL++L +I P+F  L K
Sbjct: 452 HTQLSGVVTALVLLLVLLVIAPLFYSLQK 480


>gi|18450371 protein tyrosine phosphatase, receptor type, A isoform
           2 precursor [Homo sapiens]
          Length = 793

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 10/29 (34%), Positives = 21/29 (72%)

Query: 57  IIMIQTLLIILFIIVPIFLLLDKDDSKAG 85
           ++ + +LL+I+FII+ +++L  K   +AG
Sbjct: 147 MVALSSLLVIVFIIIVLYMLRFKKYKQAG 175


>gi|18450369 protein tyrosine phosphatase, receptor type, A isoform
           2 precursor [Homo sapiens]
          Length = 793

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 10/29 (34%), Positives = 21/29 (72%)

Query: 57  IIMIQTLLIILFIIVPIFLLLDKDDSKAG 85
           ++ + +LL+I+FII+ +++L  K   +AG
Sbjct: 147 MVALSSLLVIVFIIIVLYMLRFKKYKQAG 175


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,683,899
Number of Sequences: 37866
Number of extensions: 174232
Number of successful extensions: 390
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 23
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.