Guide to the Human Genome
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Name: C7orf53 Sequence: fasta or formatted (131aa) NCBI GI: 32699019
Description:

hypothetical protein LOC286006

Not currently referenced in the text

Other entries for this name:
alt mRNA {131aa} hypothetical protein LOC286006
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.3          3           1
 C cysteine            1.5          2           1
 D aspartate           8.4         11           2
 E glutamate           3.1          4           1
 F phenylalanine       4.6          6           2
 G glycine             7.6         10           1
 H histidine           1.5          2           1
 I isoleucine          7.6         10           1
 K lysine              5.3          7           1
 L leucine            14.5         19           2
 M methionine          2.3          3           1
 N asparagine          8.4         11           2
 P proline             2.3          3           1
 Q glutamine           5.3          7           1
 R arginine            3.8          5           2
 S serine              8.4         11           2
 T threonine           3.8          5           1
 V valine              8.4         11           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC286006 
C7orf53               1.000   hypothetical protein LOC286006 
KIAA0100              0.017   hypothetical protein LOC9703 
OR10J1                0.017   olfactory receptor, family 10, subfamily J, member 1 ...
ODF4                  0.013   outer dense fiber of sperm tails 4 
ATP6AP2               0.013   ATPase, H+ transporting, lysosomal accessory protein...
HOOK1                 0.009   hook homolog 1 
TTYH2                 0.009   tweety 2 isoform 1 
CCDC85B               0.009   hepatitis delta antigen-interacting protein A 
CD79B                 0.009   CD79B antigen isoform 3 precursor 
CD79B                 0.009   CD79B antigen isoform 2 precursor 
CD79B                 0.009   CD79B antigen isoform 1 precursor 
CEP164                0.009   centrosomal protein 164kDa 
ALDOA                 0.009   fructose-bisphosphate aldolase A 
ALDOA                 0.009   fructose-bisphosphate aldolase A 
ALDOA                 0.009   fructose-bisphosphate aldolase A 
ALDOA                 0.009   fructose-bisphosphate aldolase A 
EMILIN1               0.009   elastin microfibril interfacer 1 
KTN1                  0.004   kinectin 1 isoform b 
KTN1                  0.004   kinectin 1 isoform a 
KTN1                  0.004   kinectin 1 isoform c 
KTN1                  0.004   kinectin 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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