Guide to the Human Genome
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Name: C14orf79 Sequence: fasta or formatted (325aa) NCBI GI: 110349765
Description:

hypothetical protein LOC122616

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         16           2
 C cysteine            4.3         14           1
 D aspartate           3.7         12           2
 E glutamate           8.9         29           2
 F phenylalanine       3.4         11           2
 G glycine             8.0         26           3
 H histidine           2.5          8           1
 I isoleucine          3.7         12           1
 K lysine              4.9         16           1
 L leucine            10.2         33           3
 M methionine          1.5          5           1
 N asparagine          1.5          5           1
 P proline             7.1         23           2
 Q glutamine           5.8         19           2
 R arginine            6.2         20           2
 S serine             12.0         39           2
 T threonine           6.5         21           2
 V valine              3.1         10           1
 W tryptophan          1.5          5           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC122616 
AFTPH                 0.030   aftiphilin protein isoform c 
AFTPH                 0.030   aftiphilin protein isoform a 
AFTPH                 0.030   aftiphilin protein isoform b 
QSER1                 0.011   glutamine and serine rich 1 
HECA                  0.011   headcase 
SOX13                 0.011   SRY-box 13 
ZNF81                 0.011   zinc finger protein 81 
HUNK                  0.009   hormonally upregulated Neu-associated kinase 
NLRP13                0.008   NACHT, leucine rich repeat and PYD containing 13 [H...
SAP130                0.008   Sin3A-associated protein, 130kDa isoform b 
SAP130                0.008   Sin3A-associated protein, 130kDa isoform a 
GOLIM4                0.008   golgi integral membrane protein 4 
ACIN1                 0.008   apoptotic chromatin condensation inducer 1 
LOC100294460          0.008   PREDICTED: similar to ATPase, Ca++ transporting, fa...
PDZD2                 0.008   PDZ domain containing 2 
PRICKLE2              0.008   prickle-like 2 
ZNF485                0.008   zinc finger protein 485 
DCC                   0.006   deleted in colorectal carcinoma 
ZEB1                  0.006   zinc finger E-box binding homeobox 1 isoform a [Hom...
ZEB1                  0.006   zinc finger E-box binding homeobox 1 isoform b [Hom...
SSPN                  0.006   sarcospan isoform 1 
AFF3                  0.006   AF4/FMR2 family, member 3 isoform 2 
AFF3                  0.006   AF4/FMR2 family, member 3 isoform 1 
BRWD1                 0.006   bromodomain and WD repeat domain containing 1 isofor...
BRWD1                 0.006   bromodomain and WD repeat domain containing 1 isofor...
RNF31                 0.006   ring finger protein 31 
PAPPA2                0.006   pappalysin 2 isoform 1 
NLRP14                0.006   NLR family, pyrin domain containing 14 
LOC100127987          0.005   PREDICTED: hypothetical protein LOC100127987 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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