BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|110349761 NSL1, MIND kinetochore complex component isoform 2 [Homo sapiens] (213 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|110349761 NSL1, MIND kinetochore complex component isoform 2 ... 431 e-121 gi|110349759 NSL1, MIND kinetochore complex component isoform 1 ... 338 3e-93 gi|21040368 beta-site APP-cleaving enzyme 1 isoform D preproprot... 33 0.14 gi|21040366 beta-site APP-cleaving enzyme 1 isoform B preproprot... 33 0.14 gi|21040364 beta-site APP-cleaving enzyme 1 isoform C preproprot... 33 0.14 gi|6912266 beta-site APP-cleaving enzyme 1 isoform A preproprote... 33 0.14 gi|223555917 metadherin [Homo sapiens] 31 0.68 gi|117968420 NUF2, NDC80 kinetochore complex component [Homo sap... 30 1.5 gi|117968353 NUF2, NDC80 kinetochore complex component [Homo sap... 30 1.5 gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens] 30 1.5 gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo sapi... 30 1.5 gi|71834863 Rho GTPase activating protein 5 isoform a [Homo sapi... 30 2.0 gi|71834861 Rho GTPase activating protein 5 isoform b [Homo sapi... 30 2.0 gi|38524622 formin binding protein 1 [Homo sapiens] 29 2.6 gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens] 29 3.4 gi|24308223 hypothetical protein LOC57577 [Homo sapiens] 28 4.4 gi|46410931 attractin-like 1 [Homo sapiens] 28 5.8 gi|21450863 attractin isoform 2 [Homo sapiens] 28 7.6 gi|21450861 attractin isoform 1 [Homo sapiens] 28 7.6 gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens] 28 7.6 gi|11496971 NMDA receptor 1 isoform NR1-1 precursor [Homo sapiens] 27 9.9 >gi|110349761 NSL1, MIND kinetochore complex component isoform 2 [Homo sapiens] Length = 213 Score = 431 bits (1109), Expect = e-121 Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL 60 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL Sbjct: 1 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL 60 Query: 61 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV 120 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV Sbjct: 61 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV 120 Query: 121 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPVLNGNAFNFSPFNM 180 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPVLNGNAFNFSPFNM Sbjct: 121 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPVLNGNAFNFSPFNM 180 Query: 181 MLAVDLSYMVFITSSPSYGKFEMQRGNSSKGDQ 213 MLAVDLSYMVFITSSPSYGKFEMQRGNSSKGDQ Sbjct: 181 MLAVDLSYMVFITSSPSYGKFEMQRGNSSKGDQ 213 >gi|110349759 NSL1, MIND kinetochore complex component isoform 1 [Homo sapiens] Length = 281 Score = 338 bits (866), Expect = 3e-93 Identities = 166/166 (100%), Positives = 166/166 (100%) Query: 1 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL 60 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL Sbjct: 1 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL 60 Query: 61 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV 120 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV Sbjct: 61 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV 120 Query: 121 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDP 166 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDP Sbjct: 121 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDP 166 >gi|21040368 beta-site APP-cleaving enzyme 1 isoform D preproprotein [Homo sapiens] Length = 432 Score = 33.5 bits (75), Expect = 0.14 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%) Query: 77 QWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILEC 136 +W +E + + INGQ D + E +D+ IVD T + P+K+ E Sbjct: 188 EWYYEVIIVR-VEINGQ-----------DLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 235 Query: 137 VIKTIKA 143 +K+IKA Sbjct: 236 AVKSIKA 242 >gi|21040366 beta-site APP-cleaving enzyme 1 isoform B preproprotein [Homo sapiens] Length = 476 Score = 33.5 bits (75), Expect = 0.14 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%) Query: 77 QWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILEC 136 +W +E + + INGQ D + E +D+ IVD T + P+K+ E Sbjct: 232 EWYYEVIIVR-VEINGQ-----------DLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 279 Query: 137 VIKTIKA 143 +K+IKA Sbjct: 280 AVKSIKA 286 >gi|21040364 beta-site APP-cleaving enzyme 1 isoform C preproprotein [Homo sapiens] Length = 457 Score = 33.5 bits (75), Expect = 0.14 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%) Query: 77 QWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILEC 136 +W +E + + INGQ D + E +D+ IVD T + P+K+ E Sbjct: 213 EWYYEVIIVR-VEINGQ-----------DLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 260 Query: 137 VIKTIKA 143 +K+IKA Sbjct: 261 AVKSIKA 267 >gi|6912266 beta-site APP-cleaving enzyme 1 isoform A preproprotein [Homo sapiens] Length = 501 Score = 33.5 bits (75), Expect = 0.14 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%) Query: 77 QWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILEC 136 +W +E + + INGQ D + E +D+ IVD T + P+K+ E Sbjct: 257 EWYYEVIIVR-VEINGQ-----------DLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 304 Query: 137 VIKTIKA 143 +K+IKA Sbjct: 305 AVKSIKA 311 >gi|223555917 metadherin [Homo sapiens] Length = 582 Score = 31.2 bits (69), Expect = 0.68 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 75 DAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYP 130 D+ S + EN+++NG W E S + S I E++++ + A KRK P Sbjct: 266 DSTLQVSSGLNENLTVNGGGWNEKSVK--LSSQISAGEEKWNSVSPASAGKRKTEP 319 >gi|117968420 NUF2, NDC80 kinetochore complex component [Homo sapiens] Length = 464 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 108 IKVLEDQFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQY 151 +K +++ IVD K K Y K+ + V K A+QE++++Y Sbjct: 233 LKEIQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNARQEVVEKY 276 >gi|117968353 NUF2, NDC80 kinetochore complex component [Homo sapiens] Length = 464 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/44 (31%), Positives = 25/44 (56%) Query: 108 IKVLEDQFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQY 151 +K +++ IVD K K Y K+ + V K A+QE++++Y Sbjct: 233 LKEIQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNARQEVVEKY 276 >gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens] Length = 936 Score = 30.0 bits (66), Expect = 1.5 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 68 IREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQ--FDEIIVDIATK 125 I E + D+++ E A +I N Q + N + D D+K E++ F E+++ + Sbjct: 141 ILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDLDVKTNEEETNFLELVLRKSLD 200 Query: 126 RKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPVLNGNAFN 174 R++ L VI T K E+ +++ LD D P + + +N Sbjct: 201 REETQEHRL-LVIATDGGKPELTGTVQLLINVLDAN-DNAPEFDKSIYN 247 >gi|14165416 protocadherin alpha 5 isoform 2 precursor [Homo sapiens] Length = 816 Score = 30.0 bits (66), Expect = 1.5 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 68 IREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQ--FDEIIVDIATK 125 I E + D+++ E A +I N Q + N + D D+K E++ F E+++ + Sbjct: 141 ILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDLDVKTNEEETNFLELVLRKSLD 200 Query: 126 RKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPVLNGNAFN 174 R++ L VI T K E+ +++ LD D P + + +N Sbjct: 201 REETQEHRL-LVIATDGGKPELTGTVQLLINVLDAN-DNAPEFDKSIYN 247 >gi|71834863 Rho GTPase activating protein 5 isoform a [Homo sapiens] Length = 1502 Score = 29.6 bits (65), Expect = 2.0 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%) Query: 92 GQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQY 151 GQ W+E CF V+ED+ + I + A ++ Y R E V K + QE+L ++ Sbjct: 447 GQPWEEVM--CF------VMEDEAYKYITE-ADSKEVYGRHQREIVEKAKEEFQEMLFEH 497 Query: 152 HPVVHPLDLKYDP 164 + + LDL P Sbjct: 498 SELFYDLDLNATP 510 >gi|71834861 Rho GTPase activating protein 5 isoform b [Homo sapiens] Length = 1501 Score = 29.6 bits (65), Expect = 2.0 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%) Query: 92 GQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQY 151 GQ W+E CF V+ED+ + I + A ++ Y R E V K + QE+L ++ Sbjct: 447 GQPWEEVM--CF------VMEDEAYKYITE-ADSKEVYGRHQREIVEKAKEEFQEMLFEH 497 Query: 152 HPVVHPLDLKYDP 164 + + LDL P Sbjct: 498 SELFYDLDLNATP 510 >gi|38524622 formin binding protein 1 [Homo sapiens] Length = 617 Score = 29.3 bits (64), Expect = 2.6 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 111 LEDQFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDP 164 L DQFD + K Q+ ILE IK +K + EI Y + L KY P Sbjct: 7 LWDQFDNL-----EKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQP 55 >gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens] Length = 4624 Score = 28.9 bits (63), Expect = 3.4 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 20/159 (12%) Query: 63 ALPEEIREPALRDAQWTFESAVQENISINGQAWQEASD-----------------NCFMD 105 A+P + PAL D Q T AV+ IS+ Q +S+ N D Sbjct: 1017 AIPNIVMAPALEDVQQTLNKAVECIISVPKGVRQWSSELLSKKKIQERKMAALQSNEDSD 1076 Query: 106 SDIKVLEDQFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPD 165 SD+++ E++ + + +IA+ P + + K + +EI+K V+ + + Sbjct: 1077 SDVEMGENELQDTL-EIASVNLPIPVQ-TKNYYKNVSENKEIVKLV-SVLSTIINSTKKE 1133 Query: 166 PVLNGNAFNFSPFNMMLAVDLSYMVFITSSPSYGKFEMQ 204 + + + F + + FIT SP +FE Q Sbjct: 1134 VITSMDCFKRYNHIWQKGKEEAIKTFITQSPLLSEFESQ 1172 >gi|24308223 hypothetical protein LOC57577 [Homo sapiens] Length = 936 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 114 QFDEIIVDIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPVLNGNAF 173 Q I+ D K+ RK+ E +I+T K Q+ K+Y H L L + + G A Sbjct: 292 QSTHILPDEEKMVKERKRKLKEVLIQTFKENQQCQKRYFAAWHKLILDH---RIKLGKAG 348 Query: 174 NFSPFNMMLAV 184 S + + L V Sbjct: 349 TLSDWKIQLKV 359 >gi|46410931 attractin-like 1 [Homo sapiens] Length = 1379 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/36 (33%), Positives = 20/36 (55%) Query: 167 VLNGNAFNFSPFNMMLAVDLSYMVFITSSPSYGKFE 202 V+ G FN+S F M+L +L ++ +PS G + Sbjct: 319 VIGGYTFNYSSFQMVLNYNLESSIWNVGTPSRGPLQ 354 >gi|21450863 attractin isoform 2 [Homo sapiens] Length = 1272 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/42 (33%), Positives = 24/42 (57%) Query: 167 VLNGNAFNFSPFNMMLAVDLSYMVFITSSPSYGKFEMQRGNS 208 V+ G FN S +NM+LA DL+ ++ + S ++ G+S Sbjct: 355 VVGGYMFNHSDYNMVLAYDLASREWLPLNRSVNNVVVRYGHS 396 >gi|21450861 attractin isoform 1 [Homo sapiens] Length = 1429 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/42 (33%), Positives = 24/42 (57%) Query: 167 VLNGNAFNFSPFNMMLAVDLSYMVFITSSPSYGKFEMQRGNS 208 V+ G FN S +NM+LA DL+ ++ + S ++ G+S Sbjct: 355 VVGGYMFNHSDYNMVLAYDLASREWLPLNRSVNNVVVRYGHS 396 >gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens] Length = 1585 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/36 (30%), Positives = 21/36 (58%) Query: 177 PFNMMLAVDLSYMVFITSSPSYGKFEMQRGNSSKGD 212 P ++ V+LSY++ T+ P ++ R ++S GD Sbjct: 853 PAEPLITVELSYIINGTTDPHCASWDYSRADASSGD 888 >gi|11496971 NMDA receptor 1 isoform NR1-1 precursor [Homo sapiens] Length = 885 Score = 27.3 bits (59), Expect = 9.9 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%) Query: 118 IIVDIATKR-KQYPRKILECVIKTIKAKQEILKQYHP--VVHPLDLKYDP 164 I ++IA KR K RK ++ + ++ L+QYHP + PL+L DP Sbjct: 831 IFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQQYHPTDITGPLNLS-DP 879 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,294,905 Number of Sequences: 37866 Number of extensions: 340433 Number of successful extensions: 787 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 773 Number of HSP's gapped (non-prelim): 22 length of query: 213 length of database: 18,247,518 effective HSP length: 98 effective length of query: 115 effective length of database: 14,536,650 effective search space: 1671714750 effective search space used: 1671714750 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.