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Search of human proteins with 155029533
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|155029533 membrane-spanning 4-domains, subfamily A, member
13 isoform 1 [Homo sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|155029533 membrane-spanning 4-domains, subfamily A, member 13... 306 6e-84
gi|155029535 membrane-spanning 4-domains, subfamily A, member 13... 211 1e-55
gi|13899295 membrane-spanning 4-domains, subfamily A, member 8B ... 47 5e-06
gi|8923206 membrane-spanning 4-domains, subfamily A, member 12 [... 41 3e-04
gi|23110987 membrane-spanning 4-domains, subfamily A, member 1 [... 40 0.001
gi|23110989 membrane-spanning 4-domains, subfamily A, member 1 [... 40 0.001
gi|23110997 membrane-spanning 4-domains, subfamily A, member 5 [... 38 0.004
gi|239755562 PREDICTED: membrane-spanning 4-domains, subfamily A... 36 0.014
gi|239750062 PREDICTED: membrane-spanning 4-domains, subfamily A... 36 0.014
gi|239744375 PREDICTED: membrane-spanning 4-domains, subfamily A... 35 0.019
gi|4506975 solute carrier family 12 (sodium/potassium/chloride t... 32 0.21
gi|149588599 membrane-spanning 4-domains, subfamily A, member 15... 31 0.36
gi|119226217 membrane-spanning 4-domains, subfamily A, member 14... 29 1.4
gi|154689796 ATPase, H+ transporting, V0 subunit isoform 2 [Homo... 28 2.3
gi|22749421 membrane-spanning 4-domains, subfamily A, member 15 ... 27 5.1
gi|4502521 carbonic anhydrase VA, mitochondrial precursor [Homo ... 27 6.7
gi|225903437 glycogen synthase kinase 3 beta isoform 2 [Homo sap... 27 8.8
gi|21361340 glycogen synthase kinase 3 beta isoform 1 [Homo sapi... 27 8.8
gi|225579067 solute carrier family 12, member 4 isoform e [Homo ... 27 8.8
gi|225579065 solute carrier family 12, member 4 isoform d [Homo ... 27 8.8
gi|225579063 solute carrier family 12, member 4 isoform c [Homo ... 27 8.8
gi|225579061 solute carrier family 12, member 4 isoform b [Homo ... 27 8.8
gi|4827006 solute carrier family 12, member 4 isoform a [Homo sa... 27 8.8
gi|28372497 ubiquitin protein ligase E3 component n-recognin 1 [... 27 8.8
gi|22907060 solute carrier family 47, member 1 [Homo sapiens] 27 8.8
gi|55770840 chloride channel 3 isoform e [Homo sapiens] 27 8.8
gi|55770838 chloride channel 3 isoform b [Homo sapiens] 27 8.8
>gi|155029533 membrane-spanning 4-domains, subfamily A, member 13
isoform 1 [Homo sapiens]
Length = 152
Score = 306 bits (783), Expect = 6e-84
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR 60
MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR
Sbjct: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR 60
Query: 61 SGIISTLIINIICIITTITAVTLTIIELSHFNSVSYRNYGQAKLGREVSRILLFFYGLEF 120
SGIISTLIINIICIITTITAVTLTIIELSHFNSVSYRNYGQAKLGREVSRILLFFYGLEF
Sbjct: 61 SGIISTLIINIICIITTITAVTLTIIELSHFNSVSYRNYGQAKLGREVSRILLFFYGLEF 120
Query: 121 SIALTHSIYSCSNLFRRQNDLTSVTEEAESTP 152
SIALTHSIYSCSNLFRRQNDLTSVTEEAESTP
Sbjct: 121 SIALTHSIYSCSNLFRRQNDLTSVTEEAESTP 152
>gi|155029535 membrane-spanning 4-domains, subfamily A, member 13
isoform 2 [Homo sapiens]
Length = 112
Score = 211 bits (538), Expect = 1e-55
Identities = 112/152 (73%), Positives = 112/152 (73%), Gaps = 40/152 (26%)
Query: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR 60
MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR
Sbjct: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTR 60
Query: 61 SGIISTLIINIICIITTITAVTLTIIELSHFNSVSYRNYGQAKLGREVSRILLFFYGLEF 120
SG KLGREVSRILLFFYGLEF
Sbjct: 61 SG----------------------------------------KLGREVSRILLFFYGLEF 80
Query: 121 SIALTHSIYSCSNLFRRQNDLTSVTEEAESTP 152
SIALTHSIYSCSNLFRRQNDLTSVTEEAESTP
Sbjct: 81 SIALTHSIYSCSNLFRRQNDLTSVTEEAESTP 112
>gi|13899295 membrane-spanning 4-domains, subfamily A, member 8B
[Homo sapiens]
Length = 250
Score = 47.4 bits (111), Expect = 5e-06
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWG-IFFIIAGVFLIRVTKYPT 59
+IG+ HI + + + +G+ Y +++ G WG ++FII+G + P
Sbjct: 78 IIGLAHIGLGSIMATVLVGE-------YLSISFYGGFPFWGGLWFIISGSLSVAAENQPY 130
Query: 60 RSGIIS-TLIINIICIITTITAVTLTIIELSHFNSVSYRNYGQ----AKLGREVSRILLF 114
++S +L +NI+ I + V L I +LS + +Y +Y G +S +LL
Sbjct: 131 SYCLLSGSLGLNIVSAICSAVGVILFITDLSIPHPYAYPDYYPYAWGVNPGMAISGVLLV 190
Query: 115 FYGLEFSIALTHSIYSC 131
F LEF IA S + C
Sbjct: 191 FCLLEFGIACASSHFGC 207
>gi|8923206 membrane-spanning 4-domains, subfamily A, member 12
[Homo sapiens]
Length = 267
Score = 41.2 bits (95), Expect = 3e-04
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWG-IFFIIAGVFLIRVTKYPT 59
M+G+ HI +L L + G + G WG + FII+G + +K +
Sbjct: 97 MVGLMHIGFG-IVLCLISFSFREVLG-FASTAVIGGYPFWGGLSFIISGSLSVSASKELS 154
Query: 60 RSGIISTLIINIICIITTITAVTLTIIELSHFNSVSYRNYGQAKLGREVSRILLFFYGLE 119
R + +L +NI+ I V L ++++ N V+ ++Y G+ +S L+ F LE
Sbjct: 155 RCLVKGSLGMNIVSSILAFIGVILLLVDMC-INGVAGQDYWAVLSGKGISATLMIFSLLE 213
Query: 120 FSIA 123
F +A
Sbjct: 214 FFVA 217
>gi|23110987 membrane-spanning 4-domains, subfamily A, member 1
[Homo sapiens]
Length = 297
Score = 39.7 bits (91), Expect = 0.001
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWG-IFFIIAGVFLIRVTKYPT 59
M G+FHI + L++ G Y P+ LWG I +II+G L K
Sbjct: 58 MNGLFHIALGGLLMI--------PAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSR 109
Query: 60 RSGIISTLIINIICIITTITAVTLTI-----IELSHFNSVSYRNYGQA 102
+ + +I+N + + I+ + L+I I++SHF + N+ +A
Sbjct: 110 KCLVKGKMIMNSLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRA 157
>gi|23110989 membrane-spanning 4-domains, subfamily A, member 1
[Homo sapiens]
Length = 297
Score = 39.7 bits (91), Expect = 0.001
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWG-IFFIIAGVFLIRVTKYPT 59
M G+FHI + L++ G Y P+ LWG I +II+G L K
Sbjct: 58 MNGLFHIALGGLLMI--------PAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSR 109
Query: 60 RSGIISTLIINIICIITTITAVTLTI-----IELSHFNSVSYRNYGQA 102
+ + +I+N + + I+ + L+I I++SHF + N+ +A
Sbjct: 110 KCLVKGKMIMNSLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRA 157
>gi|23110997 membrane-spanning 4-domains, subfamily A, member 5
[Homo sapiens]
Length = 200
Score = 37.7 bits (86), Expect = 0.004
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 30 PVTYKTGCTLWG-IFFIIAGVFLIRVTKYPTRSGIISTLIINIICIITTITAVTLT---- 84
P + +G WG + FI +G FLI V + T + II + I+N + + I + L
Sbjct: 80 PFIFLSGYPFWGSVLFINSGAFLIAVKRKTTETLIILSRIMNFLSALGAIAGIILLTFGF 139
Query: 85 IIELSHFNSVSYRNYGQAK----LGREVSRILLFFYGLEFSIALTHSIYSC 131
I++ ++ S++N Q K L + L+ F +E I+L SI C
Sbjct: 140 ILDQNYICGYSHQN-SQCKAVTVLFLGILITLMTFSIIELFISLPFSILGC 189
>gi|239755562 PREDICTED: membrane-spanning 4-domains, subfamily A,
member 4E isoform 1 [Homo sapiens]
Length = 243
Score = 35.8 bits (81), Expect = 0.014
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYE--PVTYKTGCTLWGIFFIIAGVFLIRVTKYP 58
++G+ I + L + + + AF +YE P+ T+WG I V L
Sbjct: 69 VLGVVRILIALMSLSMGIIMMCVAFSSYEEHPIFVYVAYTIWGSVMFIISVSLSVAAGIR 128
Query: 59 TRSGIIS-TLIINIICIITTITAVTLTIIELSHFN---------SVSYRNYGQAKLGREV 108
T G++ +L NI + I+ + + I L+ ++ +S Y +
Sbjct: 129 TTKGLVGGSLGKNITSSVLAISGILINAISLTFYSFRYHYCNHDQLSSNCYMTMSILMGT 188
Query: 109 SRILLFFYGLEFSIALTHSIYSCSNLFRRQNDLTSVT 145
++L LEF IA++ S + C L +++ +T
Sbjct: 189 DGMVLLLSVLEFCIAVSLSAFGCKVLCCSPSEVVLIT 225
>gi|239750062 PREDICTED: membrane-spanning 4-domains, subfamily A,
member 4E isoform 3 [Homo sapiens]
Length = 243
Score = 35.8 bits (81), Expect = 0.014
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYE--PVTYKTGCTLWGIFFIIAGVFLIRVTKYP 58
++G+ I + L + + + AF +YE P+ T+WG I V L
Sbjct: 69 VLGVVRILIALMSLSMGIIMMCVAFSSYEEHPIFVYVAYTIWGSVMFIISVSLSVAAGIR 128
Query: 59 TRSGIIS-TLIINIICIITTITAVTLTIIELSHFN---------SVSYRNYGQAKLGREV 108
T G++ +L NI + I+ + + I L+ ++ +S Y +
Sbjct: 129 TTKGLVGGSLGKNITSSVLAISGILINAISLTFYSFRYHYCNHDQLSSNCYMTMSILMGT 188
Query: 109 SRILLFFYGLEFSIALTHSIYSCSNLFRRQNDLTSVT 145
++L LEF IA++ S + C L +++ +T
Sbjct: 189 DGMVLLLSVLEFCIAVSLSAFGCKVLCCSPSEVVLIT 225
>gi|239744375 PREDICTED: membrane-spanning 4-domains, subfamily A,
member 4E isoform 3 [Homo sapiens]
Length = 243
Score = 35.4 bits (80), Expect = 0.019
Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 12/157 (7%)
Query: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYE--PVTYKTGCTLWGIFFIIAGVFLIRVTKYP 58
++G+ I + L + + + AF +YE P+ T+WG I V L
Sbjct: 69 VLGVVRILIALMSLSMGIIMMCVAFSSYEEHPIFVYVAYTIWGSVMFIISVSLSVAAGIR 128
Query: 59 TRSGIIS-TLIINIICIITTITAVTLTIIELSHFN---------SVSYRNYGQAKLGREV 108
T G++ +L NI + I+ + + I L+ ++ +S Y +
Sbjct: 129 TTKGLVGGSLGKNITSSVLAISGILINAISLTFYSFRYHYCNHDQLSSNCYMTMSILMGT 188
Query: 109 SRILLFFYGLEFSIALTHSIYSCSNLFRRQNDLTSVT 145
++L LEF IA+ S + C L +++ +T
Sbjct: 189 DGMVLLLSVLEFCIAVALSAFGCKVLCCSPSEVVLIT 225
>gi|4506975 solute carrier family 12 (sodium/potassium/chloride
transporters), member 2 [Homo sapiens]
Length = 1212
Score = 32.0 bits (71), Expect = 0.21
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 14 LVLYMGQIKGA--FGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTRSGI-ISTLIIN 70
+V Y + KG FG + V + +WG+ + IR++ ++GI +S L+I
Sbjct: 272 VVTYTAESKGVVKFGWIKGVLVRCMLNIWGV------MLFIRLSWIVGQAGIGLSVLVIM 325
Query: 71 IICIITTITAVTLTIIELSHF 91
+ ++TTIT ++ + I + F
Sbjct: 326 MATVVTTITGLSTSAIATNGF 346
>gi|149588599 membrane-spanning 4-domains, subfamily A, member 15
isoform 1 [Homo sapiens]
Length = 240
Score = 31.2 bits (69), Expect = 0.36
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 17/132 (12%)
Query: 1 MIGIFHIFMWYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWG-IFFIIAGVFLIRVTKYPT 59
+IG+ H+ LL++ G + F + G WG FII+G + K T
Sbjct: 80 LIGLIHLGFGSVLLMVRRGHVGIFF-------IEGGVPFWGGACFIISGSLSVAAEKNHT 132
Query: 60 RSGIISTLIINIICIITTITAVTLTIIELSHFNSVSYRNYGQAKLGREVSRILLFFYGLE 119
+ S+L NI+ ++ + +++ N R Y +L F LE
Sbjct: 133 SCLVRSSLGTNILSVMAAFAGTAILLMDFGVTNRDVDRGY---------LAVLTIFTVLE 183
Query: 120 FSIALTHSIYSC 131
F A+ + C
Sbjct: 184 FFTAVIAMHFGC 195
>gi|119226217 membrane-spanning 4-domains, subfamily A, member 14
isoform 1 [Homo sapiens]
Length = 679
Score = 29.3 bits (64), Expect = 1.4
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 30 PVTYKTGCTLWG-IFFIIAGVFLIRVTKYPTRSGIISTLIINIICIITTITAVTLTIIEL 88
P+ TG WG + FI+ G + K ++ + N+I + IT +T TI+
Sbjct: 75 PLVVLTGYPFWGALIFILTGYLTVTDKKSKLLGQGVTGM--NVISSLVAITGITFTILSY 132
Query: 89 SH 90
H
Sbjct: 133 RH 134
>gi|154689796 ATPase, H+ transporting, V0 subunit isoform 2 [Homo
sapiens]
Length = 213
Score = 28.5 bits (62), Expect = 2.3
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 38 TLWGIFFIIAGVFLIRVTKYPTRSGIISTLIINIICIITTITAVTLTIIELS 89
T WG+ I F V K P R II+ L+ +C A+ +T+ LS
Sbjct: 64 TFWGLVGIAGPWF---VPKGPNRGVIITMLVATAVCCYLLCPALGMTVAPLS 112
>gi|22749421 membrane-spanning 4-domains, subfamily A, member 15
isoform 2 [Homo sapiens]
Length = 147
Score = 27.3 bits (59), Expect = 5.1
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 36 GCTLWG-IFFIIAGVFLIRVTKYPTRSGIISTLIINIICIITTITAVTLTIIELSHFNSV 94
G WG FII+G + K T + S+L NI+ ++ + +++ N
Sbjct: 15 GVPFWGGACFIISGSLSVAAEKNHTSCLVRSSLGTNILSVMAAFAGTAILLMDFGVTNRD 74
Query: 95 SYRNYGQAKLGREVSRILLFFYGLEFSIALTHSIYSC 131
R Y +L F LEF A+ + C
Sbjct: 75 VDRGY---------LAVLTIFTVLEFFTAVIAMHFGC 102
>gi|4502521 carbonic anhydrase VA, mitochondrial precursor [Homo
sapiens]
Length = 305
Score = 26.9 bits (58), Expect = 6.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 86 IELSHFNSVSYRNYGQAKLGREVSRILLFFYGL 118
+ L H+NSV Y+NY +A +G ++ F L
Sbjct: 154 LHLVHWNSVKYQNYKEAVVGENGLAVIGVFLKL 186
>gi|225903437 glycogen synthase kinase 3 beta isoform 2 [Homo
sapiens]
Length = 420
Score = 26.6 bits (57), Expect = 8.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 97 RNYGQAKLGREVSRILLFFYGLEFSIALTHSIYSCSNLFRRQN 139
R+Y +AK V + L+ Y L S+A HS C + QN
Sbjct: 144 RHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQN 186
>gi|21361340 glycogen synthase kinase 3 beta isoform 1 [Homo
sapiens]
Length = 433
Score = 26.6 bits (57), Expect = 8.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 97 RNYGQAKLGREVSRILLFFYGLEFSIALTHSIYSCSNLFRRQN 139
R+Y +AK V + L+ Y L S+A HS C + QN
Sbjct: 144 RHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQN 186
>gi|225579067 solute carrier family 12, member 4 isoform e [Homo
sapiens]
Length = 1054
Score = 26.6 bits (57), Expect = 8.8
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 38 TLWGIFF-----IIAGVFLIRVTKYPTRSGIISTLIINII-CIITTITAVTLTII 86
TL G++ I + +R+T +G++ L+I +I C T +TA++++ I
Sbjct: 89 TLMGVYLPCLQNIFGVILFLRLTWMVGTAGVLQALLIVLICCCCTLLTAISMSAI 143
>gi|225579065 solute carrier family 12, member 4 isoform d [Homo
sapiens]
Length = 1079
Score = 26.6 bits (57), Expect = 8.8
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 38 TLWGIFF-----IIAGVFLIRVTKYPTRSGIISTLIINII-CIITTITAVTLTII 86
TL G++ I + +R+T +G++ L+I +I C T +TA++++ I
Sbjct: 114 TLMGVYLPCLQNIFGVILFLRLTWMVGTAGVLQALLIVLICCCCTLLTAISMSAI 168
>gi|225579063 solute carrier family 12, member 4 isoform c [Homo
sapiens]
Length = 1087
Score = 26.6 bits (57), Expect = 8.8
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 38 TLWGIFF-----IIAGVFLIRVTKYPTRSGIISTLIINII-CIITTITAVTLTII 86
TL G++ I + +R+T +G++ L+I +I C T +TA++++ I
Sbjct: 122 TLMGVYLPCLQNIFGVILFLRLTWMVGTAGVLQALLIVLICCCCTLLTAISMSAI 176
>gi|225579061 solute carrier family 12, member 4 isoform b [Homo
sapiens]
Length = 1079
Score = 26.6 bits (57), Expect = 8.8
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 38 TLWGIFF-----IIAGVFLIRVTKYPTRSGIISTLIINII-CIITTITAVTLTII 86
TL G++ I + +R+T +G++ L+I +I C T +TA++++ I
Sbjct: 120 TLMGVYLPCLQNIFGVILFLRLTWMVGTAGVLQALLIVLICCCCTLLTAISMSAI 174
>gi|4827006 solute carrier family 12, member 4 isoform a [Homo
sapiens]
Length = 1085
Score = 26.6 bits (57), Expect = 8.8
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 38 TLWGIFF-----IIAGVFLIRVTKYPTRSGIISTLIINII-CIITTITAVTLTII 86
TL G++ I + +R+T +G++ L+I +I C T +TA++++ I
Sbjct: 120 TLMGVYLPCLQNIFGVILFLRLTWMVGTAGVLQALLIVLICCCCTLLTAISMSAI 174
>gi|28372497 ubiquitin protein ligase E3 component n-recognin 1
[Homo sapiens]
Length = 1749
Score = 26.6 bits (57), Expect = 8.8
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 52 IRVTKYPTRSGIISTLIINIICIITTITAVTLTIIE-----LSHFNSVSYRNYGQAKLGR 106
I +T + + TL ++I I+ +T T++E L N +++ Y Q KLGR
Sbjct: 412 ISITALSVQMFTVPTLARHLIEEQNVISVITETLLEVLPEYLDRNNKFNFQGYSQDKLGR 471
>gi|22907060 solute carrier family 47, member 1 [Homo sapiens]
Length = 570
Score = 26.6 bits (57), Expect = 8.8
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 68 IINIICIITTITAVTLTIIELSHFNSVSYRNYGQAKLGREVSRILLFFYGLEFSIAL 124
IIN++ + I AV+ L+ + R G K+G V+ I + GL IAL
Sbjct: 371 IINLVAQVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIAL 427
>gi|55770840 chloride channel 3 isoform e [Homo sapiens]
Length = 866
Score = 26.6 bits (57), Expect = 8.8
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 10 WYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTRSGIISTLII 69
WY L L+ + G FG LWG FFI A + R K T+ G L +
Sbjct: 385 WY-LFELFPFILLGVFGG-----------LWGAFFIRANIAWCRRRK-STKFGKYPVLEV 431
Query: 70 NIICIITTITA 80
I+ IT + A
Sbjct: 432 IIVAAITAVIA 442
>gi|55770838 chloride channel 3 isoform b [Homo sapiens]
Length = 818
Score = 26.6 bits (57), Expect = 8.8
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 10 WYFLLVLYMGQIKGAFGTYEPVTYKTGCTLWGIFFIIAGVFLIRVTKYPTRSGIISTLII 69
WY L L+ + G FG LWG FFI A + R K T+ G L +
Sbjct: 385 WY-LFELFPFILLGVFGG-----------LWGAFFIRANIAWCRRRK-STKFGKYPVLEV 431
Query: 70 NIICIITTITA 80
I+ IT + A
Sbjct: 432 IIVAAITAVIA 442
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.144 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,597,675
Number of Sequences: 37866
Number of extensions: 155144
Number of successful extensions: 448
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 28
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.