Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC12A4 Sequence: fasta or formatted (1054aa) NCBI GI: 225579067
Description:

solute carrier family 12, member 4 isoform e

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [1079aa] solute carrier family 12, member 4 isoform b
alt prot [1087aa] solute carrier family 12, member 4 isoform c
alt prot [1079aa] solute carrier family 12, member 4 isoform d
alt prot [1085aa] solute carrier family 12, member 4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         85           3
 C cysteine            1.9         20           4
 D aspartate           3.9         41           2
 E glutamate           5.7         60           3
 F phenylalanine       4.3         45           2
 G glycine             7.6         80           3
 H histidine           2.3         24           1
 I isoleucine          6.0         63           2
 K lysine              3.6         38           2
 L leucine            12.2        129           3
 M methionine          3.5         37           2
 N asparagine          3.2         34           2
 P proline             4.4         46           2
 Q glutamine           2.7         28           1
 R arginine            5.2         55           3
 S serine              6.8         72           2
 T threonine           5.6         59           2
 V valine              7.7         81           3
 W tryptophan          1.8         19           2
 Y tyrosine            3.6         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 12, member 4 isoform e 
SLC12A4               0.994   solute carrier family 12, member 4 isoform a 
SLC12A4               0.993   solute carrier family 12, member 4 isoform d 
SLC12A4               0.986   solute carrier family 12, member 4 isoform b 
SLC12A4               0.961   solute carrier family 12, member 4 isoform c 
SLC12A6               0.785   solute carrier family 12, member 6 isoform e 
SLC12A6               0.785   solute carrier family 12, member 6 isoform d 
SLC12A6               0.785   solute carrier family 12, member 6 isoform c 
SLC12A6               0.785   solute carrier family 12, member 6 isoform c 
SLC12A6               0.785   solute carrier family 12, member 6 isoform b 
SLC12A6               0.785   solute carrier family 12, member 6 isoform a 
SLC12A5               0.711   solute carrier family 12 (potassium-chloride transpo...
SLC12A7               0.709   solute carrier family 12 (potassium/chloride transp...
SLC12A5               0.709   solute carrier family 12 (potassium-chloride transp...
SLC12A9               0.114   solute carrier family 12 (potassium/chloride transpo...
SLC12A3               0.100   solute carrier family 12, member 3 isoform 3 
SLC12A3               0.099   solute carrier family 12, member 3 isoform 2 
SLC12A3               0.099   solute carrier family 12, member 3 isoform 1 
SLC12A2               0.099   solute carrier family 12 (sodium/potassium/chloride t...
SLC12A1               0.090   sodium potassium chloride cotransporter 2 
SLC12A8               0.037   solute carrier family 12, member 8 
SLC7A2                0.012   solute carrier family 7, member 2 isoform 1 
SLC7A2                0.011   solute carrier family 7, member 2 isoform 2 
SLC7A3                0.007   solute carrier family 7 (cationic amino acid transp...
SLC7A3                0.007   solute carrier family 7 (cationic amino acid transp...
SLC7A1                0.006   solute carrier family 7 (cationic amino acid transpor...
ADCY6                 0.006   adenylate cyclase 6 isoform b 
SLC7A14               0.005   solute carrier family 7 (cationic amino acid transp...
GOLGA4                0.005   golgi autoantigen, golgin subfamily a, 4 
KIF3B                 0.005   kinesin family member 3B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press