Guide to the Human Genome
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Name: B3GALNT1 Sequence: fasta or formatted (331aa) NCBI GI: 15451877
Description:

UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids
Protein Glycosylation

Other entries for this name:
alt mRNA [331aa] UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1
alt mRNA [331aa] UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1
alt mRNA [331aa] UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1
alt mRNA [331aa] UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0         10           2
 C cysteine            1.8          6           1
 D aspartate           4.2         14           1
 E glutamate           5.4         18           1
 F phenylalanine       6.6         22           2
 G glycine             3.6         12           1
 H histidine           3.9         13           1
 I isoleucine          6.0         20           2
 K lysine              5.1         17           2
 L leucine            12.4         41           4
 M methionine          3.3         11           2
 N asparagine          4.8         16           2
 P proline             3.9         13           2
 Q glutamine           2.7          9           1
 R arginine            4.8         16           2
 S serine              6.3         21           2
 T threonine           5.4         18           2
 V valine              6.6         22           1
 W tryptophan          2.7          9           2
 Y tyrosine            6.9         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ... 
B3GALNT1              1.000   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALNT1              1.000   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALNT1              1.000   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALNT1              1.000   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 [...
B3GALT5               0.282   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.282   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.282   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.282   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.282   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 [...
B3GALT1               0.270   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALT2               0.246   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 2 [...
LOC100289720          0.170   PREDICTED: hypothetical protein XP_002347139 
LOC100288842          0.170   PREDICTED: hypothetical protein XP_002342992 
B3GNT7                0.164   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GNT5                0.163   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GNT3                0.149   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GNT6                0.149   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltra...
B3GNT4                0.148   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GNT9                0.146   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltra...
B3GNT2                0.139   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltrans...
B3GALT4               0.127   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 4 [...
B3GNT8                0.107   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GALNT2              0.061   beta-1,3-N-acetylgalactosaminyltransferase 2 
B3GALT6               0.048   beta-1,3-galactosyltransferase 6 
CHSY1                 0.015   chondroitin sulfate synthase 1 
CHSY3                 0.012   chondroitin sulfate synthase 3 
VPS41                 0.009   vacuolar protein sorting 41 isoform 2 
VPS41                 0.009   vacuolar protein sorting 41 isoform 1 
PANK4                 0.007   pantothenate kinase 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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