Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: B3GALT1 Sequence: fasta or formatted (326aa) NCBI GI: 10304987
Description:

UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         13           1
 C cysteine            2.5          8           1
 D aspartate           4.6         15           1
 E glutamate           4.0         13           2
 F phenylalanine       5.5         18           1
 G glycine             4.3         14           2
 H histidine           3.7         12           1
 I isoleucine          7.4         24           2
 K lysine              6.7         22           2
 L leucine             8.9         29           2
 M methionine          3.1         10           1
 N asparagine          5.5         18           2
 P proline             4.9         16           2
 Q glutamine           1.8          6           1
 R arginine            6.1         20           3
 S serine              7.7         25           2
 T threonine           6.4         21           2
 V valine              5.8         19           2
 W tryptophan          2.1          7           1
 Y tyrosine            4.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ... 
B3GALT2               0.423   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 2 [...
B3GALT5               0.303   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.303   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.303   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.303   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.303   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 [...
B3GALNT1              0.275   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALNT1              0.275   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALNT1              0.275   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALNT1              0.275   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALNT1              0.275   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 [...
B3GNT2                0.237   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltrans...
B3GNT5                0.216   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GNT3                0.205   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GNT6                0.196   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltra...
B3GNT7                0.193   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GNT4                0.190   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
LOC100289720          0.177   PREDICTED: hypothetical protein XP_002347139 
LOC100288842          0.177   PREDICTED: hypothetical protein XP_002342992 
B3GNT9                0.175   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltra...
B3GALT4               0.175   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 4 [...
B3GNT8                0.157   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GALNT2              0.075   beta-1,3-N-acetylgalactosaminyltransferase 2 
B3GALT6               0.065   beta-1,3-galactosyltransferase 6 
C1GALT1               0.009   core 1 synthase, glycoprotein-N-acetylgalactosamine 3...
CHSY3                 0.008   chondroitin sulfate synthase 3 
ZNF195                0.006   zinc finger protein 195 isoform 2 
ZNF195                0.006   zinc finger protein 195 isoform 1 
ZNF195                0.006   zinc finger protein 195 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press