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Search of human proteins with 15431334
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15431334 caspase 1 isoform epsilon [Homo sapiens]
(88 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15431334 caspase 1 isoform epsilon [Homo sapiens] 186 3e-48
gi|15431332 caspase 1 isoform delta [Homo sapiens] 155 8e-39
gi|15431330 caspase 1 isoform gamma precursor [Homo sapiens] 152 7e-38
gi|15431328 caspase 1 isoform alpha precursor [Homo sapiens] 152 7e-38
gi|4502573 caspase 1 isoform beta precursor [Homo sapiens] 152 7e-38
gi|209870079 caspase 5 isoform f precursor [Homo sapiens] 93 5e-20
gi|209870075 caspase 5 isoform d [Homo sapiens] 93 5e-20
gi|209870073 caspase 5 isoform c [Homo sapiens] 93 5e-20
gi|209870071 caspase 5 isoform b precursor [Homo sapiens] 93 5e-20
gi|209870069 caspase 5 isoform a precursor [Homo sapiens] 93 5e-20
gi|15451910 caspase 4 isoform gamma precursor [Homo sapiens] 90 4e-19
gi|4502577 caspase 4 isoform alpha precursor [Homo sapiens] 90 4e-19
gi|55925612 caspase recruitment domain family, member 17 [Homo s... 39 7e-04
gi|62953113 caspase-1 dominant-negative inhibitor pseudo-ICE iso... 39 7e-04
gi|16751833 caspase-1 dominant-negative inhibitor pseudo-ICE iso... 39 7e-04
gi|39995059 caspase 2 isoform 1 preproprotein [Homo sapiens] 32 0.082
gi|36287069 K(lysine) acetyltransferase 5 isoform 1 [Homo sapiens] 29 0.70
gi|36287060 K(lysine) acetyltransferase 5 isoform 3 [Homo sapiens] 29 0.70
gi|36287049 K(lysine) acetyltransferase 5 isoform 2 [Homo sapiens] 29 0.70
gi|14790128 caspase 9 isoform beta preproprotein [Homo sapiens] 28 1.2
gi|14790124 caspase 9 isoform alpha preproprotein [Homo sapiens] 28 1.2
gi|15718698 caspase 7 isoform delta [Homo sapiens] 28 1.5
gi|15718700 caspase 7 isoform alpha [Homo sapiens] 28 1.5
gi|4502581 caspase 7 isoform alpha precursor [Homo sapiens] 28 1.5
gi|10954343 ICEBERG caspase-1 inhibitor [Homo sapiens] 28 1.5
gi|225903424 TatD DNase domain containing 2 [Homo sapiens] 27 4.5
gi|14790115 caspase 3 preproprotein [Homo sapiens] 26 5.9
gi|14790119 caspase 3 preproprotein [Homo sapiens] 26 5.9
gi|91984775 regulator of telomere elongation helicase 1 isoform ... 26 7.7
gi|7706541 regulator of telomere elongation helicase 1 isoform 1... 26 7.7
>gi|15431334 caspase 1 isoform epsilon [Homo sapiens]
Length = 88
Score = 186 bits (473), Expect = 3e-48
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MADKVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFS 60
MADKVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFS
Sbjct: 1 MADKVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFS 60
Query: 61 FEQPDGRAQMPTTERVTLTRCFYLFPGH 88
FEQPDGRAQMPTTERVTLTRCFYLFPGH
Sbjct: 61 FEQPDGRAQMPTTERVTLTRCFYLFPGH 88
>gi|15431332 caspase 1 isoform delta [Homo sapiens]
Length = 263
Score = 155 bits (391), Expect = 8e-39
Identities = 74/84 (88%), Positives = 78/84 (92%), Gaps = 1/84 (1%)
Query: 6 LKEKRK-LFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQP 64
LK+K K + I++ DNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQP
Sbjct: 180 LKDKPKVIIIQACRGDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQP 239
Query: 65 DGRAQMPTTERVTLTRCFYLFPGH 88
DGRAQMPTTERVTLTRCFYLFPGH
Sbjct: 240 DGRAQMPTTERVTLTRCFYLFPGH 263
Score = 40.0 bits (92), Expect = 4e-04
Identities = 19/19 (100%), Positives = 19/19 (100%)
Query: 1 MADKVLKEKRKLFIRSMGE 19
MADKVLKEKRKLFIRSMGE
Sbjct: 1 MADKVLKEKRKLFIRSMGE 19
>gi|15431330 caspase 1 isoform gamma precursor [Homo sapiens]
Length = 311
Score = 152 bits (383), Expect = 7e-38
Identities = 72/81 (88%), Positives = 73/81 (90%)
Query: 8 EKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGR 67
EK + S DNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGR
Sbjct: 231 EKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGR 290
Query: 68 AQMPTTERVTLTRCFYLFPGH 88
AQMPTTERVTLTRCFYLFPGH
Sbjct: 291 AQMPTTERVTLTRCFYLFPGH 311
Score = 40.0 bits (92), Expect = 4e-04
Identities = 19/19 (100%), Positives = 19/19 (100%)
Query: 1 MADKVLKEKRKLFIRSMGE 19
MADKVLKEKRKLFIRSMGE
Sbjct: 1 MADKVLKEKRKLFIRSMGE 19
>gi|15431328 caspase 1 isoform alpha precursor [Homo sapiens]
Length = 404
Score = 152 bits (383), Expect = 7e-38
Identities = 72/81 (88%), Positives = 73/81 (90%)
Query: 8 EKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGR 67
EK + S DNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGR
Sbjct: 324 EKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGR 383
Query: 68 AQMPTTERVTLTRCFYLFPGH 88
AQMPTTERVTLTRCFYLFPGH
Sbjct: 384 AQMPTTERVTLTRCFYLFPGH 404
Score = 41.2 bits (95), Expect = 2e-04
Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 1 MADKVLKEKRKLFIRSMGEDNVS 23
MADKVLKEKRKLFIRSMGE ++
Sbjct: 1 MADKVLKEKRKLFIRSMGEGTIN 23
>gi|4502573 caspase 1 isoform beta precursor [Homo sapiens]
Length = 383
Score = 152 bits (383), Expect = 7e-38
Identities = 72/81 (88%), Positives = 73/81 (90%)
Query: 8 EKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGR 67
EK + S DNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGR
Sbjct: 303 EKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGR 362
Query: 68 AQMPTTERVTLTRCFYLFPGH 88
AQMPTTERVTLTRCFYLFPGH
Sbjct: 363 AQMPTTERVTLTRCFYLFPGH 383
Score = 41.2 bits (95), Expect = 2e-04
Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 1 MADKVLKEKRKLFIRSMGEDNVS 23
MADKVLKEKRKLFIRSMGE ++
Sbjct: 1 MADKVLKEKRKLFIRSMGEGTIN 23
>gi|209870079 caspase 5 isoform f precursor [Homo sapiens]
Length = 447
Score = 92.8 bits (229), Expect = 5e-20
Identities = 47/85 (55%), Positives = 57/85 (67%)
Query: 4 KVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQ 63
K+ +EK + S NVSWR T GS+FI LI Q+Y+C C + EIFRKV+ SFE
Sbjct: 363 KIHEEKDFIAFCSSTPHNVSWRDRTRGSIFITELITCFQKYSCCCHLMEIFRKVQKSFEV 422
Query: 64 PDGRAQMPTTERVTLTRCFYLFPGH 88
P +AQMPT ER TLTR FYLFPG+
Sbjct: 423 PQAKAQMPTIERATLTRDFYLFPGN 447
>gi|209870075 caspase 5 isoform d [Homo sapiens]
Length = 216
Score = 92.8 bits (229), Expect = 5e-20
Identities = 47/85 (55%), Positives = 57/85 (67%)
Query: 4 KVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQ 63
K+ +EK + S NVSWR T GS+FI LI Q+Y+C C + EIFRKV+ SFE
Sbjct: 132 KIHEEKDFIAFCSSTPHNVSWRDRTRGSIFITELITCFQKYSCCCHLMEIFRKVQKSFEV 191
Query: 64 PDGRAQMPTTERVTLTRCFYLFPGH 88
P +AQMPT ER TLTR FYLFPG+
Sbjct: 192 PQAKAQMPTIERATLTRDFYLFPGN 216
>gi|209870073 caspase 5 isoform c [Homo sapiens]
Length = 292
Score = 92.8 bits (229), Expect = 5e-20
Identities = 47/85 (55%), Positives = 57/85 (67%)
Query: 4 KVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQ 63
K+ +EK + S NVSWR T GS+FI LI Q+Y+C C + EIFRKV+ SFE
Sbjct: 208 KIHEEKDFIAFCSSTPHNVSWRDRTRGSIFITELITCFQKYSCCCHLMEIFRKVQKSFEV 267
Query: 64 PDGRAQMPTTERVTLTRCFYLFPGH 88
P +AQMPT ER TLTR FYLFPG+
Sbjct: 268 PQAKAQMPTIERATLTRDFYLFPGN 292
>gi|209870071 caspase 5 isoform b precursor [Homo sapiens]
Length = 376
Score = 92.8 bits (229), Expect = 5e-20
Identities = 47/85 (55%), Positives = 57/85 (67%)
Query: 4 KVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQ 63
K+ +EK + S NVSWR T GS+FI LI Q+Y+C C + EIFRKV+ SFE
Sbjct: 292 KIHEEKDFIAFCSSTPHNVSWRDRTRGSIFITELITCFQKYSCCCHLMEIFRKVQKSFEV 351
Query: 64 PDGRAQMPTTERVTLTRCFYLFPGH 88
P +AQMPT ER TLTR FYLFPG+
Sbjct: 352 PQAKAQMPTIERATLTRDFYLFPGN 376
>gi|209870069 caspase 5 isoform a precursor [Homo sapiens]
Length = 434
Score = 92.8 bits (229), Expect = 5e-20
Identities = 47/85 (55%), Positives = 57/85 (67%)
Query: 4 KVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQ 63
K+ +EK + S NVSWR T GS+FI LI Q+Y+C C + EIFRKV+ SFE
Sbjct: 350 KIHEEKDFIAFCSSTPHNVSWRDRTRGSIFITELITCFQKYSCCCHLMEIFRKVQKSFEV 409
Query: 64 PDGRAQMPTTERVTLTRCFYLFPGH 88
P +AQMPT ER TLTR FYLFPG+
Sbjct: 410 PQAKAQMPTIERATLTRDFYLFPGN 434
>gi|15451910 caspase 4 isoform gamma precursor [Homo sapiens]
Length = 321
Score = 89.7 bits (221), Expect = 4e-19
Identities = 44/81 (54%), Positives = 57/81 (70%)
Query: 8 EKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGR 67
EK + S NVSWR TMGS+FI +LI Q+Y+ C +EE+FRKV+ SFE P +
Sbjct: 241 EKDFIAFCSSTPHNVSWRDSTMGSIFITQLITCFQKYSWCCHLEEVFRKVQQSFETPRAK 300
Query: 68 AQMPTTERVTLTRCFYLFPGH 88
AQMPT ER+++TR FYLFPG+
Sbjct: 301 AQMPTIERLSMTRYFYLFPGN 321
>gi|4502577 caspase 4 isoform alpha precursor [Homo sapiens]
Length = 377
Score = 89.7 bits (221), Expect = 4e-19
Identities = 44/81 (54%), Positives = 57/81 (70%)
Query: 8 EKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGR 67
EK + S NVSWR TMGS+FI +LI Q+Y+ C +EE+FRKV+ SFE P +
Sbjct: 297 EKDFIAFCSSTPHNVSWRDSTMGSIFITQLITCFQKYSWCCHLEEVFRKVQQSFETPRAK 356
Query: 68 AQMPTTERVTLTRCFYLFPGH 88
AQMPT ER+++TR FYLFPG+
Sbjct: 357 AQMPTIERLSMTRYFYLFPGN 377
>gi|55925612 caspase recruitment domain family, member 17 [Homo
sapiens]
Length = 110
Score = 39.3 bits (90), Expect = 7e-04
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1 MADKVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVR 58
MADKVLKEKRK FIRS+GE + + +G + R++ + C+ + K R
Sbjct: 1 MADKVLKEKRKQFIRSVGEGTI---NGLLGELLETRVLSQEEIEIVKCENATVMDKAR 55
>gi|62953113 caspase-1 dominant-negative inhibitor pseudo-ICE
isoform 1 [Homo sapiens]
Length = 197
Score = 39.3 bits (90), Expect = 7e-04
Identities = 18/23 (78%), Positives = 20/23 (86%)
Query: 1 MADKVLKEKRKLFIRSMGEDNVS 23
MADKVLKEKRKLFI SMGE ++
Sbjct: 1 MADKVLKEKRKLFIHSMGEGTIN 23
>gi|16751833 caspase-1 dominant-negative inhibitor pseudo-ICE
isoform 2 [Homo sapiens]
Length = 97
Score = 39.3 bits (90), Expect = 7e-04
Identities = 18/23 (78%), Positives = 20/23 (86%)
Query: 1 MADKVLKEKRKLFIRSMGEDNVS 23
MADKVLKEKRKLFI SMGE ++
Sbjct: 1 MADKVLKEKRKLFIHSMGEGTIN 23
>gi|39995059 caspase 2 isoform 1 preproprotein [Homo sapiens]
Length = 452
Score = 32.3 bits (72), Expect = 0.082
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 25 RHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGRAQMPTTERV-------- 76
R+ GS +I L + E AC V ++ KV + +G A R
Sbjct: 378 RNTKRGSWYIEALAQVFSERACDMHVADMLVKVNALIKDREGYAPGTEFHRCKEMSEYCS 437
Query: 77 TLTRCFYLFPGH 88
TL R YLFPGH
Sbjct: 438 TLCRHLYLFPGH 449
>gi|36287069 K(lysine) acetyltransferase 5 isoform 1 [Homo sapiens]
Length = 546
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 35 GRLIEHMQEYACSCDVE-----EIFRKVRFSFEQPDGRAQMPTTERV-TLTRCF 82
GR ++ +Q + CD+ EI+RK SF + DGR ++ + L +CF
Sbjct: 303 GRSLKCLQRHLTKCDLRHPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCF 356
>gi|36287060 K(lysine) acetyltransferase 5 isoform 3 [Homo sapiens]
Length = 461
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 35 GRLIEHMQEYACSCDVE-----EIFRKVRFSFEQPDGRAQMPTTERV-TLTRCF 82
GR ++ +Q + CD+ EI+RK SF + DGR ++ + L +CF
Sbjct: 218 GRSLKCLQRHLTKCDLRHPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCF 271
>gi|36287049 K(lysine) acetyltransferase 5 isoform 2 [Homo sapiens]
Length = 513
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 35 GRLIEHMQEYACSCDVE-----EIFRKVRFSFEQPDGRAQMPTTERV-TLTRCF 82
GR ++ +Q + CD+ EI+RK SF + DGR ++ + L +CF
Sbjct: 270 GRSLKCLQRHLTKCDLRHPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCF 323
>gi|14790128 caspase 9 isoform beta preproprotein [Homo sapiens]
Length = 266
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 22 VSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGRAQMP 71
VSWR P GS ++ L + +++A S D++ + +V + QMP
Sbjct: 202 VSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSVKGIYKQMP 251
>gi|14790124 caspase 9 isoform alpha preproprotein [Homo sapiens]
Length = 416
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 22 VSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGRAQMP 71
VSWR P GS ++ L + +++A S D++ + +V + QMP
Sbjct: 352 VSWRDPKSGSWYVETLDDIFEQWAHSEDLQSLLLRVANAVSVKGIYKQMP 401
>gi|15718698 caspase 7 isoform delta [Homo sapiens]
Length = 336
Score = 28.1 bits (61), Expect = 1.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 4 KVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKV 57
K+ E LF S SWR P GS F+ L ++E+ ++ +I +V
Sbjct: 245 KIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRV 298
>gi|15718700 caspase 7 isoform alpha [Homo sapiens]
Length = 303
Score = 28.1 bits (61), Expect = 1.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 4 KVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKV 57
K+ E LF S SWR P GS F+ L ++E+ ++ +I +V
Sbjct: 212 KIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRV 265
>gi|4502581 caspase 7 isoform alpha precursor [Homo sapiens]
Length = 303
Score = 28.1 bits (61), Expect = 1.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 4 KVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKV 57
K+ E LF S SWR P GS F+ L ++E+ ++ +I +V
Sbjct: 212 KIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRV 265
>gi|10954343 ICEBERG caspase-1 inhibitor [Homo sapiens]
Length = 90
Score = 28.1 bits (61), Expect = 1.5
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 1 MADKVLKEKRKLFIRSMGEDNVS 23
MAD++L++KR++FI S+G ++
Sbjct: 1 MADQLLRKKRRIFIHSVGAGTIN 23
>gi|225903424 TatD DNase domain containing 2 [Homo sapiens]
Length = 761
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 37 LIEHMQEYACSCDVEEIFRKVRFSFEQPDGRAQMPTTERVTLTRCFYLFPGH 88
++EH + DVEEI VRFS E+P E + T + ++P H
Sbjct: 323 VMEHPSSGSDWSDVEEI-STVRFSQEEPVSLKPSAVPEPSSFTTDYVMYPPH 373
>gi|14790115 caspase 3 preproprotein [Homo sapiens]
Length = 277
Score = 26.2 bits (56), Expect = 5.9
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 4 KVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIF----RKVRF 59
K+ E L+ S SWR+ GS FI L +++YA + I RKV
Sbjct: 186 KIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVAT 245
Query: 60 SFE 62
FE
Sbjct: 246 EFE 248
>gi|14790119 caspase 3 preproprotein [Homo sapiens]
Length = 277
Score = 26.2 bits (56), Expect = 5.9
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 4 KVLKEKRKLFIRSMGEDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIF----RKVRF 59
K+ E L+ S SWR+ GS FI L +++YA + I RKV
Sbjct: 186 KIPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVAT 245
Query: 60 SFE 62
FE
Sbjct: 246 EFE 248
>gi|91984775 regulator of telomere elongation helicase 1 isoform 2
[Homo sapiens]
Length = 1300
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 11/44 (25%)
Query: 34 IGRLIEHMQEYAC--SCDVEEIFRKVRFSFEQPDGRAQMPTTER 75
IGR+I H Q+Y CD RF+F D RAQ+P+ R
Sbjct: 695 IGRVIRHRQDYGAVFLCD-------HRFAF--ADARAQLPSWVR 729
>gi|7706541 regulator of telomere elongation helicase 1 isoform 1
[Homo sapiens]
Length = 1219
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 11/44 (25%)
Query: 34 IGRLIEHMQEYAC--SCDVEEIFRKVRFSFEQPDGRAQMPTTER 75
IGR+I H Q+Y CD RF+F D RAQ+P+ R
Sbjct: 695 IGRVIRHRQDYGAVFLCD-------HRFAF--ADARAQLPSWVR 729
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,497,404
Number of Sequences: 37866
Number of extensions: 122285
Number of successful extensions: 287
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 34
length of query: 88
length of database: 18,247,518
effective HSP length: 60
effective length of query: 28
effective length of database: 15,975,558
effective search space: 447315624
effective search space used: 447315624
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.