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Search of human proteins with 153946427
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153946427 X-ray repair cross complementing protein 3 [Homo
sapiens]
(346 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153946430 X-ray repair cross complementing protein 3 [Homo sa... 684 0.0
gi|153946427 X-ray repair cross complementing protein 3 [Homo sa... 684 0.0
gi|4885659 X-ray repair cross complementing protein 3 [Homo sapi... 684 0.0
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens] 101 1e-21
gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens] 101 1e-21
gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens] 101 1e-21
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens] 92 5e-19
gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens] 81 1e-15
gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens] 79 8e-15
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens] 60 2e-09
gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens] 56 4e-08
gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens] 42 0.001
gi|4885657 X-ray repair cross complementing protein 2 [Homo sapi... 35 0.13
gi|239735584 TRAF2 and NCK interacting kinase isoform 4 [Homo sa... 33 0.38
gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo sa... 33 0.38
gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo sa... 33 0.38
gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo sap... 33 0.38
gi|29171705 melanoma antigen family D, 2 [Homo sapiens] 32 1.1
gi|19387846 melanoma antigen family D, 2 [Homo sapiens] 32 1.1
gi|41350320 melanoma antigen family D, 2 [Homo sapiens] 32 1.1
gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens] 30 2.4
gi|116268109 nucleotide-binding oligomerization domains 27 [Homo... 30 2.4
gi|222080107 solute carrier family 23 (nucleobase transporters),... 30 3.2
gi|222080105 solute carrier family 23 (nucleobase transporters),... 30 3.2
gi|32699064 WD repeat domain 53 [Homo sapiens] 30 4.1
>gi|153946430 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 684 bits (1765), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60
MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
Sbjct: 1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60
Query: 61 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120
SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
Sbjct: 61 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120
Query: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180
CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
Sbjct: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180
Query: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240
IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
Sbjct: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240
Query: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300
TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
Sbjct: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300
Query: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346
LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
Sbjct: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346
>gi|153946427 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 684 bits (1765), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60
MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
Sbjct: 1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60
Query: 61 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120
SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
Sbjct: 61 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120
Query: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180
CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
Sbjct: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180
Query: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240
IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
Sbjct: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240
Query: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300
TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
Sbjct: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300
Query: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346
LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
Sbjct: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346
>gi|4885659 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 684 bits (1765), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60
MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
Sbjct: 1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60
Query: 61 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120
SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
Sbjct: 61 SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120
Query: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180
CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
Sbjct: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180
Query: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240
IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
Sbjct: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240
Query: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300
TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
Sbjct: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300
Query: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346
LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
Sbjct: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346
>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
Length = 384
Score = 101 bits (251), Expect = 1e-21
Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)
Query: 3 LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
L + L+ + + + ++ + ++ L S +L ++T LS V LL S +
Sbjct: 6 LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64
Query: 63 LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
TA + Q+ LS LD L GG+ +TE+ G GKTQ + + +
Sbjct: 65 QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
Query: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181
P GGLE VYI TE AF +RL ++ + PR LL S++ +
Sbjct: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179
Query: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238
D +L+ + ++S+G+ +LV++DSVA+ R EFD+Q R + L
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238
Query: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282
++L+ L+ F PV+ NQ+T + G L + VSP
Sbjct: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292
Query: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
ALG TW++ + RL+ L E R + + +P P +S YTI EG+
Sbjct: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342
>gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
Length = 350
Score = 101 bits (251), Expect = 1e-21
Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)
Query: 3 LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
L + L+ + + + ++ + ++ L S +L ++T LS V LL S +
Sbjct: 6 LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64
Query: 63 LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
TA + Q+ LS LD L GG+ +TE+ G GKTQ + + +
Sbjct: 65 QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
Query: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181
P GGLE VYI TE AF +RL ++ + PR LL S++ +
Sbjct: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179
Query: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238
D +L+ + ++S+G+ +LV++DSVA+ R EFD+Q R + L
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238
Query: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282
++L+ L+ F PV+ NQ+T + G L + VSP
Sbjct: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292
Query: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
ALG TW++ + RL+ L E R + + +P P +S YTI EG+
Sbjct: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342
>gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]
Length = 350
Score = 101 bits (251), Expect = 1e-21
Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)
Query: 3 LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
L + L+ + + + ++ + ++ L S +L ++T LS V LL S +
Sbjct: 6 LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64
Query: 63 LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
TA + Q+ LS LD L GG+ +TE+ G GKTQ + + +
Sbjct: 65 QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123
Query: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181
P GGLE VYI TE AF +RL ++ + PR LL S++ +
Sbjct: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179
Query: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238
D +L+ + ++S+G+ +LV++DSVA+ R EFD+Q R + L
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238
Query: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282
++L+ L+ F PV+ NQ+T + G L + VSP
Sbjct: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292
Query: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
ALG TW++ + RL+ L E R + + +P P +S YTI EG+
Sbjct: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342
>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
Length = 376
Score = 92.4 bits (228), Expect = 5e-19
Identities = 95/366 (25%), Positives = 153/366 (41%), Gaps = 46/366 (12%)
Query: 2 DLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLR-------TAS 54
DL L+P + + A ++ +E+L +L + +S E L+ T
Sbjct: 13 DLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNK 72
Query: 55 LHLRGSSI----LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSS 110
G+S TAL+L +Q+ TQ ++ C LD +L GG+PL TE+ G
Sbjct: 73 PRYAGTSESHKKCTALELLEQEH---TQGFIITF-CSALDDILGGGVPLMKTTEICGAPG 128
Query: 111 AGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKR--------LQQLMAQQPRLR 162
GKTQL +QL + VQ P GG+ AV+I TE +F R +Q L + +
Sbjct: 129 VGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHK 188
Query: 163 TDVPGELLQKLRFG---SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPF 219
+ + L+ S I+ D LL V L RLV++D +A PF
Sbjct: 189 GEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPF 248
Query: 220 RCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDER 279
R + D + R R L L + L++ + V+ NQ+T ++ A
Sbjct: 249 RHDLDDLSL--RTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQAL---------- 296
Query: 280 VSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339
+ PALG +W + +RL+ R++ R + +P + + I +G R
Sbjct: 297 LVPALGESWGHAATIRLIFHWDRKQ--------RLATLYKSPSQKECTVLFQIKPQGFRD 348
Query: 340 TPGTQS 345
T T +
Sbjct: 349 TVVTSA 354
>gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
Length = 339
Score = 81.3 bits (199), Expect = 1e-15
Identities = 79/336 (23%), Positives = 139/336 (41%), Gaps = 30/336 (8%)
Query: 3 LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
L+ +N + +++A +V+ V + +L + +S + +L A+ L
Sbjct: 28 LEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAA-KLVPMGF 86
Query: 63 LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
TA + HQ++ +++ G LD LL+GG+ ITE+ G GKTQ+ L +
Sbjct: 87 TTATEFHQRRSEII----QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 142
Query: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIE 182
Q P GG E A+YI TE F +RL + + +DV L + + +
Sbjct: 143 TCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDV----LDNVAYARAFNTD 198
Query: 183 HVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQAS-APRARHLQSLGAT 241
H + + ++ L+++DS A +R ++ + + R HL
Sbjct: 199 HQTQ-------LLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRM 251
Query: 242 LRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRL 301
L L+ F V+ NQV ++ G F + P G A+ RL +
Sbjct: 252 LLRLADEFGVAVVITNQVVAQVD------GAAMFAADPKKPIGGNIIAHASTTRLYLRKG 305
Query: 302 REEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
R E R ++ +P LP + + I+A+GV
Sbjct: 306 RGE-------TRICKIYDSPCLPEAEAMFAINADGV 334
>gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]
Length = 340
Score = 78.6 bits (192), Expect = 8e-15
Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 31/340 (9%)
Query: 2 DLDLLDLNPRIIAAIKKAK---LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLR 58
D+DLL + +A IKK K + ++K + + L + LS +V ++ A+ L
Sbjct: 23 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKV-DKIKEAANKLI 81
Query: 59 GSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLAL 118
LTA + ++++ ++ G D LL GG+ ITE G GKTQL+
Sbjct: 82 EPGFLTAFEYSEKRKMV----FHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 137
Query: 119 QLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQ 178
LC+ Q P G ++I TE+ F RL+ + R D +L + +
Sbjct: 138 TLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI---ADRFNVD-HDAVLDNVLYARA 193
Query: 179 IFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQAS-APRARHLQS 237
EH + LL+ V K G+ +L++IDS+ A FR +F + A R + L
Sbjct: 194 YTSEHQME---LLDYVAAKFHE--EAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQ 248
Query: 238 LGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLL 297
+ + L+++S + V NQ+T + GA + F + P G A+ R+
Sbjct: 249 MLSRLQKISEEYNVAVFVTNQMT---ADPGAT---MTFQADPKKPIGGHILAHASTTRIS 302
Query: 298 ADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
+ R E R ++ +P +P + ++ I+A G+
Sbjct: 303 LRKGRGE-------LRIAKIYDSPEMPENEATFAITAGGI 335
>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
Length = 328
Score = 60.5 bits (145), Expect = 2e-09
Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 34/253 (13%)
Query: 73 ERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGG 132
E T LS G LD LL GL +TE+ G +GKTQ+ LC+A G
Sbjct: 73 EELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---G 127
Query: 133 LEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLE 192
L+ +Y+ + RL QL+ + +T E + LR +I + H D+ +L+
Sbjct: 128 LQQNVLYVDSNGGLTASRLLQLL----QAKTQDEEEQAEALR---RIQVVHAFDIFQMLD 180
Query: 193 CVNK-----KVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSS 247
+ + V S G ++VV+DSV A Q A +Q L L+ L+
Sbjct: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQ-LARELKTLAR 239
Query: 248 AFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAA 307
V+ N +T + R+ PALG +W+ R+L D + A+
Sbjct: 240 DLGMAVVVTNHITRDRD------------SGRLKPALGRSWSFVPSTRILLDTIEGAGAS 287
Query: 308 ----LGCPARTLR 316
+ C A++ R
Sbjct: 288 GGRRMACLAKSSR 300
>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
Length = 348
Score = 56.2 bits (134), Expect = 4e-08
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 34/237 (14%)
Query: 89 LDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPH 148
LD LL GL +TE+ G +GKTQ+ LC+A GL+ +Y+ +
Sbjct: 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---GLQQNVLYVDSNGGLTA 163
Query: 149 KRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNK-----KVPVLLS 203
RL QL+ + +T E + LR +I + H D+ +L+ + + V S
Sbjct: 164 SRLLQLL----QAKTQDEEEQAEALR---RIQVVHAFDIFQMLDVLQELRGTVAQQVTGS 216
Query: 204 RGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAM 263
G ++VV+DSV A Q A +Q L L+ L+ V+ N +T
Sbjct: 217 SGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQ-LARELKTLARDLGMAVVVTNHITRDR 275
Query: 264 EEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAA----LGCPARTLR 316
+ R+ PALG +W+ R+L D + A+ + C A++ R
Sbjct: 276 D------------SGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR 320
>gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]
Length = 135
Score = 41.6 bits (96), Expect = 0.001
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 2 DLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLR-------TAS 54
DL L+P + + A ++ +E+L +L + +S E L+ T
Sbjct: 13 DLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNK 72
Query: 55 LHLRGSSI----LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSS 110
G+S TAL+L +Q+ TQ ++ C LD +L GG+PL TE+ G
Sbjct: 73 PRYAGTSESHKKCTALELLEQEH---TQGFIITF-CSALDDILGGGVPLMKTTEICGAPG 128
Query: 111 AGKTQL 116
GKTQL
Sbjct: 129 VGKTQL 134
>gi|4885657 X-ray repair cross complementing protein 2 [Homo
sapiens]
Length = 280
Score = 34.7 bits (78), Expect = 0.13
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 98 PLDG-ITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMA 156
P+ G I E G GKT++ L P+ GGLE ++I T+ F RL ++
Sbjct: 38 PVHGDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILE 97
Query: 157 QQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVA 216
R E + K G + F+ + + LL + + S L+++DS++
Sbjct: 98 H----RLSQSSEEIIKYCLG-RFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLS 152
Query: 217 A 217
A
Sbjct: 153 A 153
>gi|239735584 TRAF2 and NCK interacting kinase isoform 4 [Homo
sapiens]
Length = 1323
Score = 33.1 bits (74), Expect = 0.38
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 261 EAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSA 320
+ E++ PL + E +SP+ WA ++ R +R +++ P + +S
Sbjct: 477 QRQEQRPVEKKPLYHYKEGMSPSEKPAWAKEVEERSRLNR----QSSPAMPHKVANRISD 532
Query: 321 PHLPPSSCSYTISAEGVRGTP 341
P+LPP S S++IS TP
Sbjct: 533 PNLPPRSESFSISGVQPARTP 553
>gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo
sapiens]
Length = 1331
Score = 33.1 bits (74), Expect = 0.38
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 261 EAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSA 320
+ E++ PL + E +SP+ WA ++ R +R +++ P + +S
Sbjct: 477 QRQEQRPVEKKPLYHYKEGMSPSEKPAWAKEVEERSRLNR----QSSPAMPHKVANRISD 532
Query: 321 PHLPPSSCSYTISAEGVRGTP 341
P+LPP S S++IS TP
Sbjct: 533 PNLPPRSESFSISGVQPARTP 553
>gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo
sapiens]
Length = 1352
Score = 33.1 bits (74), Expect = 0.38
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 261 EAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSA 320
+ E++ PL + E +SP+ WA ++ R +R +++ P + +S
Sbjct: 506 QRQEQRPVEKKPLYHYKEGMSPSEKPAWAKEVEERSRLNR----QSSPAMPHKVANRISD 561
Query: 321 PHLPPSSCSYTISAEGVRGTP 341
P+LPP S S++IS TP
Sbjct: 562 PNLPPRSESFSISGVQPARTP 582
>gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo
sapiens]
Length = 1360
Score = 33.1 bits (74), Expect = 0.38
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 261 EAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSA 320
+ E++ PL + E +SP+ WA ++ R +R +++ P + +S
Sbjct: 506 QRQEQRPVEKKPLYHYKEGMSPSEKPAWAKEVEERSRLNR----QSSPAMPHKVANRISD 561
Query: 321 PHLPPSSCSYTISAEGVRGTP 341
P+LPP S S++IS TP
Sbjct: 562 PNLPPRSESFSISGVQPARTP 582
>gi|29171705 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 31.6 bits (70), Expect = 1.1
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 256 INQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTL 315
+++ A + A+ GP+ FW R S WA + L+ L + + R +A A L
Sbjct: 205 VSKALMASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR--RAAKL 262
Query: 316 RVLSAPHLPP 325
+ P PP
Sbjct: 263 QSSQEPEAPP 272
>gi|19387846 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 31.6 bits (70), Expect = 1.1
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 256 INQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTL 315
+++ A + A+ GP+ FW R S WA + L+ L + + R +A A L
Sbjct: 205 VSKALMASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR--RAAKL 262
Query: 316 RVLSAPHLPP 325
+ P PP
Sbjct: 263 QSSQEPEAPP 272
>gi|41350320 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 31.6 bits (70), Expect = 1.1
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 256 INQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTL 315
+++ A + A+ GP+ FW R S WA + L+ L + + R +A A L
Sbjct: 205 VSKALMASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR--RAAKL 262
Query: 316 RVLSAPHLPP 325
+ P PP
Sbjct: 263 QSSQEPEAPP 272
>gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]
Length = 216
Score = 30.4 bits (67), Expect = 2.4
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 178 QIFIEHVADVDTLLECVNK-----KVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRA 232
+I + H D+ +L+ + + V S G ++VV+DSV A Q A
Sbjct: 54 RIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLA 113
Query: 233 RHLQSLGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQL 292
+Q L L+ L+ V+ N +T + R+ PALG +W+
Sbjct: 114 LMMQ-LARELKTLARDLGMAVVVTNHITRDRDSG------------RLKPALGRSWSFVP 160
Query: 293 LVRLLADRLREEEAA----LGCPARTLR 316
R+L D + A+ + C A++ R
Sbjct: 161 STRILLDTIEGAGASGGRRMACLAKSSR 188
>gi|116268109 nucleotide-binding oligomerization domains 27 [Homo
sapiens]
Length = 1866
Score = 30.4 bits (67), Expect = 2.4
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 19/91 (20%)
Query: 102 ITELAGRSSAGKTQLAL-----QLCLAVQFPRQHGGLEAGAVYICTEDAFPH-------- 148
+ E+ ++S T++++ QLC+ ++FPRQ EA A+ + D H
Sbjct: 1399 LLEVCAQASGSVTEISISETQQQLCVQLEFPRQEENPEAVALRLAHCDLGAHHSLLVGQL 1458
Query: 149 ----KRLQQLMAQQPRL--RTDVPGELLQKL 173
RLQQL Q L D LLQ L
Sbjct: 1459 METCARLQQLSLSQVNLCEDDDASSLLLQSL 1489
>gi|222080107 solute carrier family 23 (nucleobase transporters),
member 3 isoform 3 [Homo sapiens]
Length = 618
Score = 30.0 bits (66), Expect = 3.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
L ++LGC A R+L P PP +CS +S EG+
Sbjct: 333 LAASTSSLGCYALCGRLLHLPPPPPHACSRGLSLEGL 369
>gi|222080105 solute carrier family 23 (nucleobase transporters),
member 3 isoform 2 [Homo sapiens]
Length = 610
Score = 30.0 bits (66), Expect = 3.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
L ++LGC A R+L P PP +CS +S EG+
Sbjct: 325 LAASTSSLGCYALCGRLLHLPPPPPHACSRGLSLEGL 361
>gi|32699064 WD repeat domain 53 [Homo sapiens]
Length = 358
Score = 29.6 bits (65), Expect = 4.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 251 SPVLCINQVTEAMEEQGAAHGPLGFWDERVSP 282
SPVLC+N E + GA G L W E +P
Sbjct: 11 SPVLCLNASKEGLLASGAEGGDLTAWGEDGTP 42
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,278,673
Number of Sequences: 37866
Number of extensions: 575249
Number of successful extensions: 1410
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1374
Number of HSP's gapped (non-prelim): 26
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.