Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 153946427

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|153946427 X-ray repair cross complementing protein 3 [Homo
sapiens]
         (346 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|153946430 X-ray repair cross complementing protein 3 [Homo sa...   684   0.0  
gi|153946427 X-ray repair cross complementing protein 3 [Homo sa...   684   0.0  
gi|4885659 X-ray repair cross complementing protein 3 [Homo sapi...   684   0.0  
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]                     101   1e-21
gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]                     101   1e-21
gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]                     101   1e-21
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]                   92   5e-19
gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]             81   1e-15
gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]      79   8e-15
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]                     60   2e-09
gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]                     56   4e-08
gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]                    42   0.001
gi|4885657 X-ray repair cross complementing protein 2 [Homo sapi...    35   0.13 
gi|239735584 TRAF2 and NCK interacting kinase isoform 4 [Homo sa...    33   0.38 
gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo sa...    33   0.38 
gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo sa...    33   0.38 
gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo sap...    33   0.38 
gi|29171705 melanoma antigen family D, 2 [Homo sapiens]                32   1.1  
gi|19387846 melanoma antigen family D, 2 [Homo sapiens]                32   1.1  
gi|41350320 melanoma antigen family D, 2 [Homo sapiens]                32   1.1  
gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]                      30   2.4  
gi|116268109 nucleotide-binding oligomerization domains 27 [Homo...    30   2.4  
gi|222080107 solute carrier family 23 (nucleobase transporters),...    30   3.2  
gi|222080105 solute carrier family 23 (nucleobase transporters),...    30   3.2  
gi|32699064 WD repeat domain 53 [Homo sapiens]                         30   4.1  

>gi|153946430 X-ray repair cross complementing protein 3 [Homo
           sapiens]
          Length = 346

 Score =  684 bits (1765), Expect = 0.0
 Identities = 346/346 (100%), Positives = 346/346 (100%)

Query: 1   MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60
           MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
Sbjct: 1   MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60

Query: 61  SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120
           SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
Sbjct: 61  SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120

Query: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180
           CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
Sbjct: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180

Query: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240
           IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
Sbjct: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240

Query: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300
           TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
Sbjct: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300

Query: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346
           LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
Sbjct: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346


>gi|153946427 X-ray repair cross complementing protein 3 [Homo
           sapiens]
          Length = 346

 Score =  684 bits (1765), Expect = 0.0
 Identities = 346/346 (100%), Positives = 346/346 (100%)

Query: 1   MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60
           MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
Sbjct: 1   MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60

Query: 61  SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120
           SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
Sbjct: 61  SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120

Query: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180
           CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
Sbjct: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180

Query: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240
           IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
Sbjct: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240

Query: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300
           TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
Sbjct: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300

Query: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346
           LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
Sbjct: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346


>gi|4885659 X-ray repair cross complementing protein 3 [Homo
           sapiens]
          Length = 346

 Score =  684 bits (1765), Expect = 0.0
 Identities = 346/346 (100%), Positives = 346/346 (100%)

Query: 1   MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60
           MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS
Sbjct: 1   MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGS 60

Query: 61  SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120
           SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL
Sbjct: 61  SILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQL 120

Query: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180
           CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF
Sbjct: 121 CLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIF 180

Query: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240
           IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA
Sbjct: 181 IEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGA 240

Query: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300
           TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR
Sbjct: 241 TLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADR 300

Query: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346
           LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH
Sbjct: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH 346


>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
          Length = 384

 Score =  101 bits (251), Expect = 1e-21
 Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)

Query: 3   LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
           L  + L+  +   + + ++ + ++ L  S  +L ++T LS   V  LL   S       +
Sbjct: 6   LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64

Query: 63  LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
            TA  +  Q+         LS     LD  L GG+    +TE+ G    GKTQ  + + +
Sbjct: 65  QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123

Query: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181
               P   GGLE   VYI TE AF  +RL ++   + PR        LL      S++ +
Sbjct: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179

Query: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238
                 D +L+ +      ++S+G+ +LV++DSVA+  R EFD+Q       R + L   
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238

Query: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282
            ++L+ L+  F  PV+  NQ+T  +       G L    + VSP                
Sbjct: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292

Query: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
             ALG TW++ +  RL+   L  E        R + +  +P  P +S  YTI  EG+
Sbjct: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342


>gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
          Length = 350

 Score =  101 bits (251), Expect = 1e-21
 Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)

Query: 3   LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
           L  + L+  +   + + ++ + ++ L  S  +L ++T LS   V  LL   S       +
Sbjct: 6   LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64

Query: 63  LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
            TA  +  Q+         LS     LD  L GG+    +TE+ G    GKTQ  + + +
Sbjct: 65  QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123

Query: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181
               P   GGLE   VYI TE AF  +RL ++   + PR        LL      S++ +
Sbjct: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179

Query: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238
                 D +L+ +      ++S+G+ +LV++DSVA+  R EFD+Q       R + L   
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238

Query: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282
            ++L+ L+  F  PV+  NQ+T  +       G L    + VSP                
Sbjct: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292

Query: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
             ALG TW++ +  RL+   L  E        R + +  +P  P +S  YTI  EG+
Sbjct: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342


>gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]
          Length = 350

 Score =  101 bits (251), Expect = 1e-21
 Identities = 96/357 (26%), Positives = 155/357 (43%), Gaps = 42/357 (11%)

Query: 3   LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
           L  + L+  +   + + ++ + ++ L  S  +L ++T LS   V  LL   S       +
Sbjct: 6   LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RACAPKM 64

Query: 63  LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
            TA  +  Q+         LS     LD  L GG+    +TE+ G    GKTQ  + + +
Sbjct: 65  QTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSI 123

Query: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFGSQIFI 181
               P   GGLE   VYI TE AF  +RL ++   + PR        LL      S++ +
Sbjct: 124 LATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLT----SSKVHL 179

Query: 182 EHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRARHLQSL 238
                 D +L+ +      ++S+G+ +LV++DSVA+  R EFD+Q       R + L   
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNKFLARE 238

Query: 239 GATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSP---------------- 282
            ++L+ L+  F  PV+  NQ+T  +       G L    + VSP                
Sbjct: 239 ASSLKYLAEEFSIPVILTNQITTHLS------GALASQADLVSPADDLSLSEGTSGSSCV 292

Query: 283 --ALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
             ALG TW++ +  RL+   L  E        R + +  +P  P +S  YTI  EG+
Sbjct: 293 IAALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGL 342


>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
          Length = 376

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 95/366 (25%), Positives = 153/366 (41%), Gaps = 46/366 (12%)

Query: 2   DLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLR-------TAS 54
           DL    L+P +   +  A  ++ +E+L     +L +   +S  E    L+       T  
Sbjct: 13  DLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNK 72

Query: 55  LHLRGSSI----LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSS 110
               G+S      TAL+L +Q+    TQ   ++  C  LD +L GG+PL   TE+ G   
Sbjct: 73  PRYAGTSESHKKCTALELLEQEH---TQGFIITF-CSALDDILGGGVPLMKTTEICGAPG 128

Query: 111 AGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKR--------LQQLMAQQPRLR 162
            GKTQL +QL + VQ P   GG+   AV+I TE +F   R        +Q L     + +
Sbjct: 129 VGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHK 188

Query: 163 TDVPGELLQKLRFG---SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPF 219
            +   + L+        S I+     D   LL  V      L      RLV++D +A PF
Sbjct: 189 GEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPF 248

Query: 220 RCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDER 279
           R + D  +   R R L  L   +  L++  +  V+  NQ+T  ++   A           
Sbjct: 249 RHDLDDLSL--RTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQAL---------- 296

Query: 280 VSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339
           + PALG +W +   +RL+    R++        R   +  +P     +  + I  +G R 
Sbjct: 297 LVPALGESWGHAATIRLIFHWDRKQ--------RLATLYKSPSQKECTVLFQIKPQGFRD 348

Query: 340 TPGTQS 345
           T  T +
Sbjct: 349 TVVTSA 354


>gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
          Length = 339

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 79/336 (23%), Positives = 139/336 (41%), Gaps = 30/336 (8%)

Query: 3   LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSI 62
           L+   +N   +  +++A   +V+ V +    +L  +  +S  +   +L  A+  L     
Sbjct: 28  LEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAA-KLVPMGF 86

Query: 63  LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCL 122
            TA + HQ++        +++ G   LD LL+GG+    ITE+ G    GKTQ+   L +
Sbjct: 87  TTATEFHQRRSEII----QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 142

Query: 123 AVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIE 182
             Q P   GG E  A+YI TE  F  +RL  +  +     +DV    L  + +      +
Sbjct: 143 TCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDV----LDNVAYARAFNTD 198

Query: 183 HVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQAS-APRARHLQSLGAT 241
           H          +  +   ++      L+++DS  A +R ++  +   + R  HL      
Sbjct: 199 HQTQ-------LLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRM 251

Query: 242 LRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRL 301
           L  L+  F   V+  NQV   ++      G   F  +   P  G   A+    RL   + 
Sbjct: 252 LLRLADEFGVAVVITNQVVAQVD------GAAMFAADPKKPIGGNIIAHASTTRLYLRKG 305

Query: 302 REEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
           R E        R  ++  +P LP +   + I+A+GV
Sbjct: 306 RGE-------TRICKIYDSPCLPEAEAMFAINADGV 334


>gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]
          Length = 340

 Score = 78.6 bits (192), Expect = 8e-15
 Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 31/340 (9%)

Query: 2   DLDLLDLNPRIIAAIKKAK---LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLR 58
           D+DLL  +   +A IKK K   + ++K +   +   L  +  LS  +V   ++ A+  L 
Sbjct: 23  DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKV-DKIKEAANKLI 81

Query: 59  GSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLAL 118
               LTA +  ++++        ++ G    D LL GG+    ITE  G    GKTQL+ 
Sbjct: 82  EPGFLTAFEYSEKRKMV----FHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 137

Query: 119 QLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQ 178
            LC+  Q P   G      ++I TE+ F   RL+ +     R   D    +L  + +   
Sbjct: 138 TLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI---ADRFNVD-HDAVLDNVLYARA 193

Query: 179 IFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQAS-APRARHLQS 237
              EH  +   LL+ V  K       G+ +L++IDS+ A FR +F  +   A R + L  
Sbjct: 194 YTSEHQME---LLDYVAAKFHE--EAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQ 248

Query: 238 LGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLL 297
           + + L+++S  +   V   NQ+T    + GA    + F  +   P  G   A+    R+ 
Sbjct: 249 MLSRLQKISEEYNVAVFVTNQMT---ADPGAT---MTFQADPKKPIGGHILAHASTTRIS 302

Query: 298 ADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
             + R E        R  ++  +P +P +  ++ I+A G+
Sbjct: 303 LRKGRGE-------LRIAKIYDSPEMPENEATFAITAGGI 335


>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
          Length = 328

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 34/253 (13%)

Query: 73  ERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGG 132
           E   T    LS G   LD LL  GL    +TE+ G   +GKTQ+   LC+A        G
Sbjct: 73  EELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---G 127

Query: 133 LEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLE 192
           L+   +Y+ +       RL QL+    + +T    E  + LR   +I + H  D+  +L+
Sbjct: 128 LQQNVLYVDSNGGLTASRLLQLL----QAKTQDEEEQAEALR---RIQVVHAFDIFQMLD 180

Query: 193 CVNK-----KVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSS 247
            + +        V  S G  ++VV+DSV A        Q     A  +Q L   L+ L+ 
Sbjct: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQ-LARELKTLAR 239

Query: 248 AFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAA 307
                V+  N +T   +              R+ PALG +W+     R+L D +    A+
Sbjct: 240 DLGMAVVVTNHITRDRD------------SGRLKPALGRSWSFVPSTRILLDTIEGAGAS 287

Query: 308 ----LGCPARTLR 316
               + C A++ R
Sbjct: 288 GGRRMACLAKSSR 300


>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
          Length = 348

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 34/237 (14%)

Query: 89  LDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPH 148
           LD LL  GL    +TE+ G   +GKTQ+   LC+A        GL+   +Y+ +      
Sbjct: 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---GLQQNVLYVDSNGGLTA 163

Query: 149 KRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNK-----KVPVLLS 203
            RL QL+    + +T    E  + LR   +I + H  D+  +L+ + +        V  S
Sbjct: 164 SRLLQLL----QAKTQDEEEQAEALR---RIQVVHAFDIFQMLDVLQELRGTVAQQVTGS 216

Query: 204 RGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAM 263
            G  ++VV+DSV A        Q     A  +Q L   L+ L+      V+  N +T   
Sbjct: 217 SGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQ-LARELKTLARDLGMAVVVTNHITRDR 275

Query: 264 EEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAA----LGCPARTLR 316
           +              R+ PALG +W+     R+L D +    A+    + C A++ R
Sbjct: 276 D------------SGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR 320


>gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]
          Length = 135

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 15/126 (11%)

Query: 2   DLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLR-------TAS 54
           DL    L+P +   +  A  ++ +E+L     +L +   +S  E    L+       T  
Sbjct: 13  DLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNK 72

Query: 55  LHLRGSSI----LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSS 110
               G+S      TAL+L +Q+    TQ   ++  C  LD +L GG+PL   TE+ G   
Sbjct: 73  PRYAGTSESHKKCTALELLEQEH---TQGFIITF-CSALDDILGGGVPLMKTTEICGAPG 128

Query: 111 AGKTQL 116
            GKTQL
Sbjct: 129 VGKTQL 134


>gi|4885657 X-ray repair cross complementing protein 2 [Homo
           sapiens]
          Length = 280

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 98  PLDG-ITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMA 156
           P+ G I E  G    GKT++   L      P+  GGLE   ++I T+  F   RL  ++ 
Sbjct: 38  PVHGDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILE 97

Query: 157 QQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVA 216
                R     E + K   G + F+ + +    LL  +     +  S     L+++DS++
Sbjct: 98  H----RLSQSSEEIIKYCLG-RFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLS 152

Query: 217 A 217
           A
Sbjct: 153 A 153


>gi|239735584 TRAF2 and NCK interacting kinase isoform 4 [Homo
           sapiens]
          Length = 1323

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 261 EAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSA 320
           +  E++     PL  + E +SP+    WA ++  R   +R    +++   P +    +S 
Sbjct: 477 QRQEQRPVEKKPLYHYKEGMSPSEKPAWAKEVEERSRLNR----QSSPAMPHKVANRISD 532

Query: 321 PHLPPSSCSYTISAEGVRGTP 341
           P+LPP S S++IS      TP
Sbjct: 533 PNLPPRSESFSISGVQPARTP 553


>gi|239735582 TRAF2 and NCK interacting kinase isoform 3 [Homo
           sapiens]
          Length = 1331

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 261 EAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSA 320
           +  E++     PL  + E +SP+    WA ++  R   +R    +++   P +    +S 
Sbjct: 477 QRQEQRPVEKKPLYHYKEGMSPSEKPAWAKEVEERSRLNR----QSSPAMPHKVANRISD 532

Query: 321 PHLPPSSCSYTISAEGVRGTP 341
           P+LPP S S++IS      TP
Sbjct: 533 PNLPPRSESFSISGVQPARTP 553


>gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo
           sapiens]
          Length = 1352

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 261 EAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSA 320
           +  E++     PL  + E +SP+    WA ++  R   +R    +++   P +    +S 
Sbjct: 506 QRQEQRPVEKKPLYHYKEGMSPSEKPAWAKEVEERSRLNR----QSSPAMPHKVANRISD 561

Query: 321 PHLPPSSCSYTISAEGVRGTP 341
           P+LPP S S++IS      TP
Sbjct: 562 PNLPPRSESFSISGVQPARTP 582


>gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo
           sapiens]
          Length = 1360

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 261 EAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSA 320
           +  E++     PL  + E +SP+    WA ++  R   +R    +++   P +    +S 
Sbjct: 506 QRQEQRPVEKKPLYHYKEGMSPSEKPAWAKEVEERSRLNR----QSSPAMPHKVANRISD 561

Query: 321 PHLPPSSCSYTISAEGVRGTP 341
           P+LPP S S++IS      TP
Sbjct: 562 PNLPPRSESFSISGVQPARTP 582


>gi|29171705 melanoma antigen family D, 2 [Homo sapiens]
          Length = 606

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 256 INQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTL 315
           +++   A   + A+ GP+ FW  R S      WA + L+ L + + R  +A     A  L
Sbjct: 205 VSKALMASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR--RAAKL 262

Query: 316 RVLSAPHLPP 325
           +    P  PP
Sbjct: 263 QSSQEPEAPP 272


>gi|19387846 melanoma antigen family D, 2 [Homo sapiens]
          Length = 606

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 256 INQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTL 315
           +++   A   + A+ GP+ FW  R S      WA + L+ L + + R  +A     A  L
Sbjct: 205 VSKALMASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR--RAAKL 262

Query: 316 RVLSAPHLPP 325
           +    P  PP
Sbjct: 263 QSSQEPEAPP 272


>gi|41350320 melanoma antigen family D, 2 [Homo sapiens]
          Length = 606

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 256 INQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAALGCPARTL 315
           +++   A   + A+ GP+ FW  R S      WA + L+ L + + R  +A     A  L
Sbjct: 205 VSKALMASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARR--RAAKL 262

Query: 316 RVLSAPHLPP 325
           +    P  PP
Sbjct: 263 QSSQEPEAPP 272


>gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]
          Length = 216

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 178 QIFIEHVADVDTLLECVNK-----KVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRA 232
           +I + H  D+  +L+ + +        V  S G  ++VV+DSV A        Q     A
Sbjct: 54  RIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLA 113

Query: 233 RHLQSLGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQL 292
             +Q L   L+ L+      V+  N +T   +              R+ PALG +W+   
Sbjct: 114 LMMQ-LARELKTLARDLGMAVVVTNHITRDRDSG------------RLKPALGRSWSFVP 160

Query: 293 LVRLLADRLREEEAA----LGCPARTLR 316
             R+L D +    A+    + C A++ R
Sbjct: 161 STRILLDTIEGAGASGGRRMACLAKSSR 188


>gi|116268109 nucleotide-binding oligomerization domains 27 [Homo
            sapiens]
          Length = 1866

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 19/91 (20%)

Query: 102  ITELAGRSSAGKTQLAL-----QLCLAVQFPRQHGGLEAGAVYICTEDAFPH-------- 148
            + E+  ++S   T++++     QLC+ ++FPRQ    EA A+ +   D   H        
Sbjct: 1399 LLEVCAQASGSVTEISISETQQQLCVQLEFPRQEENPEAVALRLAHCDLGAHHSLLVGQL 1458

Query: 149  ----KRLQQLMAQQPRL--RTDVPGELLQKL 173
                 RLQQL   Q  L    D    LLQ L
Sbjct: 1459 METCARLQQLSLSQVNLCEDDDASSLLLQSL 1489


>gi|222080107 solute carrier family 23 (nucleobase transporters),
           member 3 isoform 3 [Homo sapiens]
          Length = 618

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
           L    ++LGC A   R+L  P  PP +CS  +S EG+
Sbjct: 333 LAASTSSLGCYALCGRLLHLPPPPPHACSRGLSLEGL 369


>gi|222080105 solute carrier family 23 (nucleobase transporters),
           member 3 isoform 2 [Homo sapiens]
          Length = 610

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 301 LREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
           L    ++LGC A   R+L  P  PP +CS  +S EG+
Sbjct: 325 LAASTSSLGCYALCGRLLHLPPPPPHACSRGLSLEGL 361


>gi|32699064 WD repeat domain 53 [Homo sapiens]
          Length = 358

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 251 SPVLCINQVTEAMEEQGAAHGPLGFWDERVSP 282
           SPVLC+N   E +   GA  G L  W E  +P
Sbjct: 11  SPVLCLNASKEGLLASGAEGGDLTAWGEDGTP 42


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,278,673
Number of Sequences: 37866
Number of extensions: 575249
Number of successful extensions: 1410
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1374
Number of HSP's gapped (non-prelim): 26
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press