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Search of human proteins with 153792604
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153792604 protein prenyltransferase alpha subunit repeat
containing 1 [Homo sapiens]
(402 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153792604 protein prenyltransferase alpha subunit repeat cont... 818 0.0
gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens] 56 5e-08
gi|33469951 Rab geranylgeranyltransferase alpha [Homo sapiens] 56 5e-08
gi|66882524 farnesyltransferase, CAAX box, alpha isoform b [Homo... 46 7e-05
gi|4503771 farnesyltransferase, CAAX box, alpha isoform a [Homo ... 46 7e-05
gi|66882532 farnesyltransferase, CAAX box, alpha isoform c [Homo... 40 0.005
gi|4505891 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 pr... 31 1.7
gi|4557377 Bruton agammaglobulinemia tyrosine kinase [Homo sapiens] 31 2.3
gi|210031154 zinc finger protein 541 [Homo sapiens] 30 3.0
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 30 3.9
gi|197313654 TBCC domain containing 1 [Homo sapiens] 30 5.0
gi|8922517 TBCC domain containing 1 [Homo sapiens] 30 5.0
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 30 5.0
gi|20270253 activating signal cointegrator 1 complex subunit 2 [... 29 6.6
gi|7662018 PHD finger protein 3 [Homo sapiens] 29 6.6
gi|41152107 ubiquitin-like 7 [Homo sapiens] 29 6.6
gi|14249682 ubiquitin-like 7 [Homo sapiens] 29 6.6
gi|113865921 hypothetical protein LOC441457 [Homo sapiens] 29 8.6
>gi|153792604 protein prenyltransferase alpha subunit repeat
containing 1 [Homo sapiens]
Length = 402
Score = 818 bits (2114), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Query: 1 MAETSEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWC 60
MAETSEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWC
Sbjct: 1 MAETSEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWC 60
Query: 61 VKFLLPYVHNKLLLYRTRKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLNPI 120
VKFLLPYVHNKLLLYRTRKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLNPI
Sbjct: 61 VKFLLPYVHNKLLLYRTRKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLNPI 120
Query: 121 KDLHLGKLALTKFPKSPETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEE 180
KDLHLGKLALTKFPKSPETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEE
Sbjct: 121 KDLHLGKLALTKFPKSPETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEE 180
Query: 181 MEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYR 240
MEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYR
Sbjct: 181 MEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYR 240
Query: 241 QFLLKSLISQTVIDSSVMEQNPLRSEPALVPPKDEEAAVSTEEPRINLPHLLEEEVEFST 300
QFLLKSLISQTVIDSSVMEQNPLRSEPALVPPKDEEAAVSTEEPRINLPHLLEEEVEFST
Sbjct: 241 QFLLKSLISQTVIDSSVMEQNPLRSEPALVPPKDEEAAVSTEEPRINLPHLLEEEVEFST 300
Query: 301 DLIDSYPGHETLWCHRRHIFYLQHHLNAGSQLSQAMEVDGLNDSSKQGYSQETKRLKRTP 360
DLIDSYPGHETLWCHRRHIFYLQHHLNAGSQLSQAMEVDGLNDSSKQGYSQETKRLKRTP
Sbjct: 301 DLIDSYPGHETLWCHRRHIFYLQHHLNAGSQLSQAMEVDGLNDSSKQGYSQETKRLKRTP 360
Query: 361 VPDSLGLEMEHRFIDQVLSTCRNVEQARFASAYRKWLVTLSQ 402
VPDSLGLEMEHRFIDQVLSTCRNVEQARFASAYRKWLVTLSQ
Sbjct: 361 VPDSLGLEMEHRFIDQVLSTCRNVEQARFASAYRKWLVTLSQ 402
>gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens]
Length = 567
Score = 56.2 bits (134), Expect = 5e-08
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 35/175 (20%)
Query: 85 DELIDVTCTLLLLNPDFTTAWNVRKELILS-------GTLNPIKDLHLGKL--ALTKFPK 135
+ ++++T +L NPDF T WN R+E++ L + LG L L PK
Sbjct: 46 ESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPK 105
Query: 136 SPETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNY 195
S TW HR W+ LG +P R E+E+C N+
Sbjct: 106 SYGTWHHRCWL------------------LGRLPEPNWTR----ELELCARFLEVDERNF 143
Query: 196 NAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQ 250
+ W +R +V A +EL+ T + + S++S +HYR LL L Q
Sbjct: 144 HCWDYRRFVATQAAVPPA----EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 105 WNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLQQLIQETSLPSFVTKGN 164
W+ R+ + + P ++L +T+ + +W +R +L QL + G
Sbjct: 146 WDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD------SGP 199
Query: 165 LGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVL 205
G +P + ++ +E+E+ A P++ +AW + W+L
Sbjct: 200 QGRLPED----VLLKELELVQNAFFTDPNDQSAWFYHRWLL 236
>gi|33469951 Rab geranylgeranyltransferase alpha [Homo sapiens]
Length = 567
Score = 56.2 bits (134), Expect = 5e-08
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 35/175 (20%)
Query: 85 DELIDVTCTLLLLNPDFTTAWNVRKELILS-------GTLNPIKDLHLGKL--ALTKFPK 135
+ ++++T +L NPDF T WN R+E++ L + LG L L PK
Sbjct: 46 ESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPK 105
Query: 136 SPETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNY 195
S TW HR W+ LG +P R E+E+C N+
Sbjct: 106 SYGTWHHRCWL------------------LGRLPEPNWTR----ELELCARFLEVDERNF 143
Query: 196 NAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQ 250
+ W +R +V A +EL+ T + + S++S +HYR LL L Q
Sbjct: 144 HCWDYRRFVATQAAVPPA----EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194
Score = 31.6 bits (70), Expect = 1.3
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 105 WNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLQQLIQETSLPSFVTKGN 164
W+ R+ + + P ++L +T+ + +W +R +L QL + G
Sbjct: 146 WDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD------SGP 199
Query: 165 LGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVL 205
G +P + ++ +E+E+ A P++ +AW + W+L
Sbjct: 200 QGRLPED----VLLKELELVQNAFFTDPNDQSAWFYHRWLL 236
>gi|66882524 farnesyltransferase, CAAX box, alpha isoform b [Homo
sapiens]
Length = 288
Score = 45.8 bits (107), Expect = 7e-05
Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 48/240 (20%)
Query: 82 LNRDELID----VTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSP 137
L RDE + +T + LN T W+ R+ L+ S + ++++ + + PK+
Sbjct: 16 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 75
Query: 138 ETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNA 197
+ W HRR VL + +++ S +E+E + + NY+A
Sbjct: 76 QVWHHRR-VLVEWLRDPS-----------------------QELEFIADILNQDAKNYHA 111
Query: 198 WSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSV 257
W HR WV+Q + K+ +EL V ++S ++ R F++ + D +V
Sbjct: 112 WQHRQWVIQ-----EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN--DRAV 164
Query: 258 MEQN-PLRSEPALVPPKDEEA-----AVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHET 311
+E+ E + P +E A + + P+LL + L+D P H +
Sbjct: 165 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ-------LLDLQPSHSS 217
>gi|4503771 farnesyltransferase, CAAX box, alpha isoform a [Homo
sapiens]
Length = 379
Score = 45.8 bits (107), Expect = 7e-05
Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 48/240 (20%)
Query: 82 LNRDELID----VTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSP 137
L RDE + +T + LN T W+ R+ L+ S + ++++ + + PK+
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166
Query: 138 ETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNA 197
+ W HRR VL + +++ S +E+E + + NY+A
Sbjct: 167 QVWHHRR-VLVEWLRDPS-----------------------QELEFIADILNQDAKNYHA 202
Query: 198 WSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSV 257
W HR WV+Q + K+ +EL V ++S ++ R F++ + D +V
Sbjct: 203 WQHRQWVIQ-----EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN--DRAV 255
Query: 258 MEQN-PLRSEPALVPPKDEEA-----AVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHET 311
+E+ E + P +E A + + P+LL + L+D P H +
Sbjct: 256 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ-------LLDLQPSHSS 308
>gi|66882532 farnesyltransferase, CAAX box, alpha isoform c [Homo
sapiens]
Length = 312
Score = 39.7 bits (91), Expect = 0.005
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 48/201 (23%)
Query: 121 KDLHLGKLALTKF----PKSPETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRL 176
KDLH +T PK+ + W HRR VL + +++ S
Sbjct: 79 KDLHEEMNYITAIIEEQPKNYQVWHHRR-VLVEWLRDPS--------------------- 116
Query: 177 IQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSG 236
+E+E + + NY+AW HR WV+Q + K+ +EL V ++S
Sbjct: 117 --QELEFIADILNQDAKNYHAWQHRQWVIQ-----EFKLWDNELQYVDQLLKEDVRNNSV 169
Query: 237 FHYRQFLLKSLISQTVIDSSVMEQN-PLRSEPALVPPKDEEA-----AVSTEEPRINLPH 290
++ R F++ + D +V+E+ E + P +E A + + P+
Sbjct: 170 WNQRYFVISNTTGYN--DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPN 227
Query: 291 LLEEEVEFSTDLIDSYPGHET 311
LL + L+D P H +
Sbjct: 228 LLNQ-------LLDLQPSHSS 241
Score = 35.8 bits (81), Expect = 0.070
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 27/173 (15%)
Query: 157 PSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNAWSHRIWVLQHL--AKLDVK 214
PS+V + + + Q+ + EEM P NY W HR +++ L +++
Sbjct: 61 PSYVLYRHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 120
Query: 215 ILLDELSSTKHWASMHVSDHSGFHYRQFLL--------KSLISQTVIDSSVMEQNPLRSE 266
+ D L+ + H H + ++F L L+ + V ++SV Q
Sbjct: 121 FIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF--- 175
Query: 267 PALVPPKDEEAAVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHI 319
V + N +LE EV+++ ++I P +E+ W + + I
Sbjct: 176 ------------VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI 216
Score = 32.0 bits (71), Expect = 1.0
Identities = 35/207 (16%), Positives = 85/207 (41%), Gaps = 30/207 (14%)
Query: 67 YVHNKLLLYRTRKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLG 126
Y H + +L ++ ++ L+ + ++ ++ P W+ R+ L+ +P ++L
Sbjct: 66 YRHFRRVLLKSLQKDLHEE--MNYITAIIEEQPKNYQVWHHRRVLV-EWLRDPSQELEFI 122
Query: 127 KLALTKFPKSPETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGE 186
L + K+ W HR+WV+Q+ +L E++ +
Sbjct: 123 ADILNQDAKNYHAWQHRQWVIQEF------------------------KLWDNELQYVDQ 158
Query: 187 AAGRYPSNYNAWSHRIWVLQHLAKLDVKILLD-ELSSTKHWASMHVSDHSGFHYRQFLL- 244
N + W+ R +V+ + + + +L+ E+ T + + S ++Y + +L
Sbjct: 159 LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 218
Query: 245 -KSLISQTVIDSSVMEQNPLRSEPALV 270
+ L + + +++ P S P L+
Sbjct: 219 DRGLSKYPNLLNQLLDLQPSHSSPYLI 245
>gi|4505891 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
precursor [Homo sapiens]
Length = 738
Score = 31.2 bits (69), Expect = 1.7
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 264 RSEPALVPPKDEEAAVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHIFYLQ 323
R+ P PP AV E+P LP L+ + L+D P TL+ H +F+
Sbjct: 287 RTLPGGQPPPRVFLAVFVEQPTPFLPRFLQRLL-----LLDYPPDRVTLFLHNNEVFHEP 341
Query: 324 HHLNAGSQLS---QAMEVDGLNDSSKQGYSQE 352
H ++ QL A+++ G ++ G +++
Sbjct: 342 HIADSWPQLQDHFSAVKLVGPEEALSPGEARD 373
>gi|4557377 Bruton agammaglobulinemia tyrosine kinase [Homo sapiens]
Length = 659
Score = 30.8 bits (68), Expect = 2.3
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 281 TEEPRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHIFYLQHHLNA-GSQLSQAMEVD 339
TEE R H L+ + +++DL+ Y H W +++ Q NA G Q+ ++
Sbjct: 117 TEELRKRWIHQLKNVIRYNSDLVQKY--HPCFWIDGQYLCCSQTAKNAMGCQI-----LE 169
Query: 340 GLNDSSKQGYSQETKRLKRTPVPD 363
N S K G S + P P+
Sbjct: 170 NRNGSLKPGSSHRKTKKPLPPTPE 193
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 30.4 bits (67), Expect = 3.0
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 313 WCHRRHIFYLQHHLNAGSQLSQAMEVDGLNDSSKQGYSQETKRLKRTPVPDSLG 366
WC R +LQ GS+L Q E DG SK+ SQ+ KR KR P P + G
Sbjct: 935 WCSR----WLQA-TTCGSKLLQGQEKDGEERDSKES-SQQRKRKKRPP-PSTAG 981
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 30.0 bits (66), Expect = 3.9
Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 28 HIDEIGLIPCPEARYNRSPIVLVENKL--GVESWCV----------KFLLPYVHNKLLLY 75
H+ + + P +R+ R+P +++ G++ W V K L P N +L
Sbjct: 840 HVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLK 899
Query: 76 -----------RTRKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLH 124
+ ++ + +D+ D + + D T R+++ + T+NP KDL
Sbjct: 900 LAMDLKGKMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTE---REKVTVMSTINPTKDLL 956
Query: 125 LGKLALTKFPKSPETWIHR 143
+ + P+ +H+
Sbjct: 957 ADLIGCQRLPEDQRKKVHQ 975
>gi|197313654 TBCC domain containing 1 [Homo sapiens]
Length = 557
Score = 29.6 bits (65), Expect = 5.0
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 186 EAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQ---- 241
E + + N+N +SH+ +V HL+ L +++LLD T AS H S HS R+
Sbjct: 157 EKSNCHNKNWNDYSHQAFVYDHLSDL-LELLLDPKQLT---ASFH-STHSSLVSREAVVA 211
Query: 242 --FLLKSLISQ 250
FL++ IS+
Sbjct: 212 LSFLIEGTISR 222
>gi|8922517 TBCC domain containing 1 [Homo sapiens]
Length = 557
Score = 29.6 bits (65), Expect = 5.0
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 186 EAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQ---- 241
E + + N+N +SH+ +V HL+ L +++LLD T AS H S HS R+
Sbjct: 157 EKSNCHNKNWNDYSHQAFVYDHLSDL-LELLLDPKQLT---ASFH-STHSSLVSREAVVA 211
Query: 242 --FLLKSLISQ 250
FL++ IS+
Sbjct: 212 LSFLIEGTISR 222
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 29.6 bits (65), Expect = 5.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 260 QNPLRSEPALVPPKDEEAAVSTEEPRINLPHLLEEEVEFSTDLIDSYPG 308
Q P + L PP+ + A T+ P P +++E V+ +L+ S+PG
Sbjct: 364 QRPAETNAHLPPPRPQRPA-ETKVPEEIPPEVVQEYVDIMEELLGSHPG 411
>gi|20270253 activating signal cointegrator 1 complex subunit 2
[Homo sapiens]
Length = 757
Score = 29.3 bits (64), Expect = 6.6
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 263 LRSEPALVPPK--DEEAAVSTEEPRINLPHLLEEEVEFST------DLIDSYPGHETLWC 314
LR+ PAL P + D + P+ N+P L+EE +E +T D + + P H+ WC
Sbjct: 21 LRTSPALHPEQKADRYFVLYKPPPKDNIPALVEEYLERATFVANDLDWLLALP-HDKFWC 79
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 29.3 bits (64), Expect = 6.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 271 PPKDEEAAVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHETLWCHRRHIFYL 322
P K++EAA+ +EP N E E + +DS +T HR+H+F L
Sbjct: 1066 PMKEQEAAMEIQEPAANKSLEKPEGSEKQKEEVDSM-SKDTTSQHRQHLFDL 1116
>gi|41152107 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 29.3 bits (64), Expect = 6.6
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 217 LDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSVMEQNPLRSEP 267
+D++++ + + +H + HS YR+ + K L ++ +D ++ L S+P
Sbjct: 104 VDKVAAMREFRVLHTALHSSSSYREAVFKMLSNKESLDQIIVATPGLSSDP 154
>gi|14249682 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 29.3 bits (64), Expect = 6.6
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 217 LDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSVMEQNPLRSEP 267
+D++++ + + +H + HS YR+ + K L ++ +D ++ L S+P
Sbjct: 104 VDKVAAMREFRVLHTALHSSSSYREAVFKMLSNKESLDQIIVATPGLSSDP 154
>gi|113865921 hypothetical protein LOC441457 [Homo sapiens]
Length = 492
Score = 28.9 bits (63), Expect = 8.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 260 QNPLRSEPALVPPKDEEAAVSTEEPRINLPHLLEEEVEFSTDLIDSYPG 308
Q P ++ L PP+ A T+ P P +++E V+ +L+ S+PG
Sbjct: 349 QRPAETKAHLPPPRPPRPA-ETKVPEEIPPEVVQEYVDIMEELLGSHPG 396
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,690,427
Number of Sequences: 37866
Number of extensions: 702339
Number of successful extensions: 1816
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1765
Number of HSP's gapped (non-prelim): 31
length of query: 402
length of database: 18,247,518
effective HSP length: 105
effective length of query: 297
effective length of database: 14,271,588
effective search space: 4238661636
effective search space used: 4238661636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.