Guide to the Human Genome
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Name: TBCCD1 Sequence: fasta or formatted (557aa) NCBI GI: 197313654
Description:

TBCC domain containing 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {557aa} TBCC domain containing 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         33           2
 C cysteine            2.3         13           1
 D aspartate           3.2         18           1
 E glutamate           5.7         32           3
 F phenylalanine       4.3         24           1
 G glycine             4.1         23           2
 H histidine           4.1         23           1
 I isoleucine          4.7         26           2
 K lysine              6.1         34           2
 L leucine            11.7         65           3
 M methionine          1.6          9           1
 N asparagine          3.4         19           1
 P proline             5.2         29           3
 Q glutamine           5.2         29           2
 R arginine            4.8         27           1
 S serine              8.8         49           2
 T threonine           6.6         37           2
 V valine              6.6         37           2
 W tryptophan          2.3         13           1
 Y tyrosine            3.1         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBCC domain containing 1 
TBCCD1                1.000   TBCC domain containing 1 
RP2                   0.033   XRP2 protein 
TBCC                  0.019   beta-tubulin cofactor C 
HDX                   0.006   highly divergent homeobox 
CUL4B                 0.005   cullin 4B isoform 2 
CUL4B                 0.005   cullin 4B isoform 1 
DNAH10                0.004   dynein, axonemal, heavy chain 10 
UBR1                  0.004   ubiquitin protein ligase E3 component n-recognin 1 [...
CLSPN                 0.004   claspin 
CXCR5                 0.004   Burkitt lymphoma receptor 1 isoform 1 
PSMD8                 0.004   proteasome 26S non-ATPase subunit 8 
PTAR1                 0.004   protein prenyltransferase alpha subunit repeat cont...
NR3C2                 0.004   nuclear receptor subfamily 3, group C, member 2 [Ho...
BAI3                  0.004   brain-specific angiogenesis inhibitor 3 
SEMA4A                0.004   semaphorin B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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