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Search of human proteins with 153792190
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153792190 neurogenic differentiation 4 [Homo sapiens]
(331 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153792190 neurogenic differentiation 4 [Homo sapiens] 682 0.0
gi|121114306 neurogenic differentiation 1 [Homo sapiens] 354 5e-98
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 253 2e-67
gi|27475985 neurogenic differentiation 6 [Homo sapiens] 242 3e-64
gi|38455396 neurogenin 1 [Homo sapiens] 87 2e-17
gi|68989258 neurogenin 3 [Homo sapiens] 80 3e-15
gi|31077092 neurogenin 2 [Homo sapiens] 80 3e-15
gi|4885075 atonal homolog 1 [Homo sapiens] 76 4e-14
gi|23097242 nephew of atonal 3 [Homo sapiens] 71 2e-12
gi|21553337 atonal homolog 7 [Homo sapiens] 70 2e-12
gi|57529222 basic helix-loop-helix domain containing, class B, 4... 70 3e-12
gi|226498192 atonal homolog 8 [Homo sapiens] 65 1e-10
gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo... 65 1e-10
gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens] 61 1e-09
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 60 2e-09
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 60 3e-09
gi|17981708 twist homolog 2 [Homo sapiens] 59 6e-09
gi|38202237 transcription factor 21 [Homo sapiens] 58 1e-08
gi|38202239 transcription factor 21 [Homo sapiens] 58 1e-08
gi|157739932 mesogenin 1 [Homo sapiens] 56 5e-08
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 55 9e-08
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 54 2e-07
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 54 3e-07
gi|148922889 scleraxis homolog B [Homo sapiens] 53 3e-07
gi|4507741 twist [Homo sapiens] 53 3e-07
gi|186972126 scleraxis homolog A [Homo sapiens] 53 3e-07
gi|239756681 PREDICTED: basic helix-loop-helix family, member a9... 52 6e-07
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 52 6e-07
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 52 6e-07
gi|161484632 nescient helix loop helix 2 [Homo sapiens] 52 6e-07
>gi|153792190 neurogenic differentiation 4 [Homo sapiens]
Length = 331
Score = 682 bits (1759), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MSKTFVKSKEMGELVNTPSWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHDSIEEEEEE 60
MSKTFVKSKEMGELVNTPSWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHDSIEEEEEE
Sbjct: 1 MSKTFVKSKEMGELVNTPSWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHDSIEEEEEE 60
Query: 61 EEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKT 120
EEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKT
Sbjct: 61 EEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKT 120
Query: 121 QKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQS 180
QKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQS
Sbjct: 121 QKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQS 180
Query: 181 VLLEKHEDKSPICDSAISVHNFNYQSPGLPSPPYGHMETHLLHLKPQVFKSLGESSFGSH 240
VLLEKHEDKSPICDSAISVHNFNYQSPGLPSPPYGHMETHLLHLKPQVFKSLGESSFGSH
Sbjct: 181 VLLEKHEDKSPICDSAISVHNFNYQSPGLPSPPYGHMETHLLHLKPQVFKSLGESSFGSH 240
Query: 241 LPDCSTPPYEGPLTPPLSISGNFSLKQDGSPDLEKSYSFMPHYPSSSLSSGHVHSTPFQA 300
LPDCSTPPYEGPLTPPLSISGNFSLKQDGSPDLEKSYSFMPHYPSSSLSSGHVHSTPFQA
Sbjct: 241 LPDCSTPPYEGPLTPPLSISGNFSLKQDGSPDLEKSYSFMPHYPSSSLSSGHVHSTPFQA 300
Query: 301 GTPRYDVPIDMSYDSYPHHGIGTQLNTVFTE 331
GTPRYDVPIDMSYDSYPHHGIGTQLNTVFTE
Sbjct: 301 GTPRYDVPIDMSYDSYPHHGIGTQLNTVFTE 331
>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
Length = 356
Score = 354 bits (909), Expect = 5e-98
Identities = 188/357 (52%), Positives = 249/357 (69%), Gaps = 31/357 (8%)
Query: 1 MSKTFVKSKEMGELV--NTPSWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHDSI---- 54
M+K++ +S MGE PSW D+ L SQ+E E + + L ++ E DS+
Sbjct: 1 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDD---LEAMNAEEDSLRNGG 57
Query: 55 -----------EEEEEEEEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGL 103
EEEEEEE+D +KPKRRGPKKKKMTKARLERF+ RR+KANARER RMHGL
Sbjct: 58 EEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMKANARERNRMHGL 117
Query: 104 NDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLS 163
N ALDNLR+V+PCYSKTQKLSKIETLRLA+NYIWALSE+L +G++P+ FV+ LCKGLS
Sbjct: 118 NAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLS 177
Query: 164 QPTSNLVAGCLQLGPQSVLLEKHEDKS---PICDSAISVHNFNYQSPGLPSPPYGHME-T 219
QPT+NLVAGCLQL P++ L E+++D P ++ VH ++YQSPGLPSPPYG M+ +
Sbjct: 178 QPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPGLPSPPYGTMDSS 237
Query: 220 HLLHLK--PQVFKSLGESSFGSHLPDCSTPPYEGPLTPPLSISGNFSLKQDGSPDLEKSY 277
H+ H+K P + + E F S L DC++P ++GPL+PPLSI+GNFS K + S + EK+Y
Sbjct: 238 HVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSFKHEPSAEFEKNY 297
Query: 278 SFMPHYPSSSLSSGHVHSTPFQ-AGTPRYDVPID--MSYDSYPHHG--IGTQLNTVF 329
+F HYP+++L+ H + F PR ++PID MS+DS+ HH + QLN +F
Sbjct: 298 AFTMHYPAATLAGAQSHGSIFSGTAAPRCEIPIDNIMSFDSHSHHERVMSAQLNAIF 354
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 253 bits (646), Expect = 2e-67
Identities = 152/316 (48%), Positives = 194/316 (61%), Gaps = 25/316 (7%)
Query: 39 GTYGMLSSLTEEHDSIEEEEEEEED--------GEKPKRRGPKKKKMTKARLERFRARRV 90
GT L+ + EE + EEEEEEE+ GE+PK+RGPKK+KMTKARLER + RR
Sbjct: 65 GTEATLAEVKEEGELGGEEEEEEEEEEGLDEAEGERPKKRGPKKRKMTKARLERSKLRRQ 124
Query: 91 KANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPE 150
KANARER RMH LN ALDNLR+V+PCYSKTQKLSKIETLRLA+NYIWALSE+L +G+ P+
Sbjct: 125 KANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPD 184
Query: 151 GKGFVEMLCKGLSQPTSNLVAGCLQLGPQSVLLEKHEDKSPICDSA---ISVHNFNYQSP 207
+V+ LCKGLSQPT+NLVAGCLQL ++ L E+ D + + ++H + Y
Sbjct: 185 LVSYVQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYPYPCS 244
Query: 208 GLPSPP------YGHMETHLL--HLKPQVFKSL-GESSFGSHLPDCSTPPYEGPLTPPLS 258
L G H L H +++L + G PD ++ YEGPL+PPL
Sbjct: 245 RLAGAQCQAAGGLGGGAAHALRTHGYCAAYETLYAAAGGGGASPDYNSSEYEGPLSPPLC 304
Query: 259 ISGNFSLKQDGSPDLEKSYSFMPHYPSSSLSSGHVHSTPFQAGTPRYDVPID--MSYDSY 316
++GNFSLKQD SPD EKSY + HY + S H F + R V + +SYD +
Sbjct: 305 LNGNFSLKQDSSPDHEKSYHYSMHYSALPGSRPTGHGLVFGSSAVRGGVHSENLLSYDMH 364
Query: 317 PHHGIG---TQLNTVF 329
HH G +LN F
Sbjct: 365 LHHDRGPMYEELNAFF 380
>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
Length = 337
Score = 242 bits (618), Expect = 3e-64
Identities = 135/265 (50%), Positives = 178/265 (67%), Gaps = 7/265 (2%)
Query: 48 TEEHDSIEEEEEEEEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDAL 107
TE+ + E+ EEE+E+G P+RRG +KKK TK RLER + RR +ANARER RMHGLNDAL
Sbjct: 56 TEKEEEEEDREEEDENG-LPRRRGLRKKKTTKLRLERVKFRRQEANARERNRMHGLNDAL 114
Query: 108 DNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLSQPTS 167
DNLR+V+PCYSKTQKLSKIETLRLA+NYIWALSE+L G+ P+ FV+ LCKGLSQPT+
Sbjct: 115 DNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPTT 174
Query: 168 NLVAGCLQLGPQSVLLEKHEDKSPICDSAISVHNFNYQSPGLPSPPYGHMETHLLHLKPQ 227
NLVAGCLQL +S L+ + + + S S Y SP L +PP + +KP
Sbjct: 175 NLVAGCLQLNARSFLMGQGGEAAHHTRSPYSTFYPPYHSPELTTPPGHGTLDNSKSMKPY 234
Query: 228 VFKSLGESSFGSHLPDCSTPPYEGPLT-PPLSISGNFSLKQDGSPDLEKSYSFMPHY--- 283
+ S ES + S P+C++P +EGPL+ PP++ +G FSLKQ+ + D K+Y++ HY
Sbjct: 235 NYCSAYESFYESTSPECASPQFEGPLSPPPINYNGIFSLKQEETLDYGKNYNYGMHYCAV 294
Query: 284 -PSSSLSSGHVHSTPFQAGTPRYDV 307
P L G + P + P YD+
Sbjct: 295 PPRGPLGQGAMFRLPTDSHFP-YDL 318
>gi|38455396 neurogenin 1 [Homo sapiens]
Length = 237
Score = 87.0 bits (214), Expect = 2e-17
Identities = 67/176 (38%), Positives = 87/176 (49%), Gaps = 18/176 (10%)
Query: 60 EEEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSK 119
++++ E+ +RRG + + R+RRVKAN RER RMH LN ALD LR V+P +
Sbjct: 65 QDDEQERRRRRGRTRVRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVLPSFPD 124
Query: 120 TQKLSKIETLRLARNYIWALSEVLE-TGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGP 178
KL+KIETLR A NYIWAL+E L Q G G E L P CL GP
Sbjct: 125 DTKLTKIETLRFAYNYIWALAETLRLADQGLPGGGARERLLPPQCVP-------CLP-GP 176
Query: 179 QSVLLEKHE------DKSPICD--SAISVHNFNYQSPGLPSPPYGHMETHLLHLKP 226
S + SP+ D S + +F Y+ PG P + + LLH P
Sbjct: 177 PSPASDAESWGSGAAAASPLSDPSSPAASEDFTYR-PGDPVFSFPSLPKDLLHTTP 231
>gi|68989258 neurogenin 3 [Homo sapiens]
Length = 214
Score = 80.1 bits (196), Expect = 3e-15
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 66 KPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSK 125
+ +R G + K A ++ R+RR KAN RER RMH LN ALD LR V+P + KL+K
Sbjct: 62 RARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTK 121
Query: 126 IETLRLARNYIWALSEVL 143
IETLR A NYIWAL++ L
Sbjct: 122 IETLRFAHNYIWALTQTL 139
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 80.1 bits (196), Expect = 3e-15
Identities = 62/170 (36%), Positives = 82/170 (48%), Gaps = 46/170 (27%)
Query: 30 EVKEEESRPGTYGM----LSSLTEEHDSIEEEEEEEE--DGEKPKRRGPK---------- 73
E+KEEE G L++LT S +EEEEEE G ++RG +
Sbjct: 9 ELKEEEDVLVLLGSASPALAALTPLSSSADEEEEEEPGASGGARRQRGAEAGQGARGGVA 68
Query: 74 ------------------KKKMTKAR-----------LERFR-ARRVKANARERTRMHGL 103
K++ ++AR ++R + RR+KAN RER RMH L
Sbjct: 69 AGAEGCRPARLLGLVHDCKRRPSRARAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNL 128
Query: 104 NDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEGKG 153
N ALD LR V+P + + KL+KIETLR A NYIWAL+E L G G
Sbjct: 129 NAALDALREVLPTFPEDAKLTKIETLRFAHNYIWALTETLRLADHCGGGG 178
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 76.3 bits (186), Expect = 4e-14
Identities = 42/84 (50%), Positives = 57/84 (67%), Gaps = 7/84 (8%)
Query: 68 KRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIE 127
++R P K++ + + RR+ ANARER RMHGLN A D LR V+P ++ +KLSK E
Sbjct: 144 RQRAPSSKQVNGVQ----KQRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYE 199
Query: 128 TLRLARNYIWALSEVLETGQTPEG 151
TL++A+ YI ALSE+L QTP G
Sbjct: 200 TLQMAQIYINALSELL---QTPSG 220
>gi|23097242 nephew of atonal 3 [Homo sapiens]
Length = 166
Score = 70.9 bits (172), Expect = 2e-12
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 7/96 (7%)
Query: 56 EEEEEEEDGEKPKRRG-PKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVM 114
EEEEEEE G G PK+K++ A+R AN RER RM LN+A D LRR +
Sbjct: 75 EEEEEEERGRGVSLLGRPKRKRVITY------AQRQAANIRERKRMFNLNEAFDQLRRKV 128
Query: 115 PCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPE 150
P ++ ++LS+IETLRLA YI ++E+LE+ + E
Sbjct: 129 PTFAYEKRLSRIETLRLAIVYISFMTELLESCEKKE 164
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 70.5 bits (171), Expect = 2e-12
Identities = 36/63 (57%), Positives = 46/63 (73%)
Query: 81 RLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALS 140
RLE RR+ ANARER RM GLN A D LRRV+P + + +KLSK ETL++A +YI AL+
Sbjct: 34 RLESAARRRLAANARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALT 93
Query: 141 EVL 143
+L
Sbjct: 94 RIL 96
>gi|57529222 basic helix-loop-helix domain containing, class B, 4
[Homo sapiens]
Length = 225
Score = 69.7 bits (169), Expect = 3e-12
Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 52 DSIEEEEEEEEDG--EKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDN 109
+S E+ +E+D ++ +RRGP + R R+ R+ NARER RMH LNDALD
Sbjct: 63 ESSGEQSGDEDDAFEQRRRRRGPGSAADGRRRPREQRSLRLSINARERRRMHDLNDALDG 122
Query: 110 LRRVMPC--YSKTQKLSKIETLRLARNYIWALSEVLE 144
LR V+P +KLSKI TL LA+NYI ++ L+
Sbjct: 123 LRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALD 159
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 64.7 bits (156), Expect = 1e-10
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 62 EDGEKPKRRGPKKKKMTKARLERFR-ARRVKANARERTRMHGLNDALDNLRRVMPCYSKT 120
+D R+ P + + ++ + RR+ ANARERTR+H ++ A + LR+ +PCYS
Sbjct: 204 QDSSASPRKRPGEATAASSEIKALQQTRRLLANARERTRVHTISAAFEALRKQVPCYSYG 263
Query: 121 QKLSKIETLRLARNYIWALSEVLE 144
QKLSK+ LR+A NYI +L+ + +
Sbjct: 264 QKLSKLAILRIACNYILSLARLAD 287
>gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo
sapiens]
Length = 323
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 74 KKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCY--SKTQKLSKIETLRL 131
KK+MT+ L++ R +K N+RER RMH LN A+D LR VMP +KLSKI TL L
Sbjct: 98 KKQMTEPELQQLR---LKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLL 154
Query: 132 ARNYIWALSEVLE 144
ARNYI L+ LE
Sbjct: 155 ARNYILMLTNSLE 167
>gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens]
Length = 272
Score = 61.2 bits (147), Expect = 1e-09
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 53 SIEEEEEEEEDGEKPKRRGPK----------KKKMTKARLERFRARRVKANARERTRMHG 102
S + + ++ GE R G K KK++++ L++ R +K N RER RMH
Sbjct: 42 STQGDMMQKMPGESLSRAGAKAAGESSKYKIKKQLSEQDLQQLR---LKINGRERKRMHD 98
Query: 103 LNDALDNLRRVMPCY--SKTQKLSKIETLRLARNYIWALSEVLE 144
LN A+D LR VMP +KLSKI TL LARNYI L+ LE
Sbjct: 99 LNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLE 142
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 60.5 bits (145), Expect = 2e-09
Identities = 34/61 (55%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 86 RARRVKANARERTRMHGLNDALDNLRRVMPC--YSKTQKLSKIETLRLARNYIWALSEVL 143
+A R+ NARER RMH LNDALD LR V+P +KLSKI TL LA+NYI ++ L
Sbjct: 241 KALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQAL 300
Query: 144 E 144
E
Sbjct: 301 E 301
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 60.1 bits (144), Expect = 3e-09
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 88 RRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLET 145
RR+++N RER RMH LN+A LR V+P +KLSKIETL LA+NYI +L+ + T
Sbjct: 76 RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILT 133
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 58.9 bits (141), Expect = 6e-09
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 58 EEEEEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCY 117
++ EDG + KK + E +++R+ AN RER R LN+A LR+++P
Sbjct: 37 KKSSEDGSPTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTL 96
Query: 118 SKTQKLSKIETLRLARNYIWALSEVLETGQ 147
+ KLSKI+TL+LA YI L +VL++ +
Sbjct: 97 -PSDKLSKIQTLKLAARYIDFLYQVLQSDE 125
>gi|38202237 transcription factor 21 [Homo sapiens]
Length = 179
Score = 58.2 bits (139), Expect = 1e-08
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 48 TEEHDSIEEEEEEEEDGEKPKRRGP--KKKKMTKARLERFRARRVKANARERTRMHGLND 105
TEE + E ++ G KRR KK ++ E + +R ANARER RM L+
Sbjct: 38 TEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSK 97
Query: 106 ALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEG 151
A L+ +P KLSK++TLRLA +YI L ++L + G
Sbjct: 98 AFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENG 143
>gi|38202239 transcription factor 21 [Homo sapiens]
Length = 179
Score = 58.2 bits (139), Expect = 1e-08
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 48 TEEHDSIEEEEEEEEDGEKPKRRGP--KKKKMTKARLERFRARRVKANARERTRMHGLND 105
TEE + E ++ G KRR KK ++ E + +R ANARER RM L+
Sbjct: 38 TEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSK 97
Query: 106 ALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEG 151
A L+ +P KLSK++TLRLA +YI L ++L + G
Sbjct: 98 AFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENG 143
>gi|157739932 mesogenin 1 [Homo sapiens]
Length = 193
Score = 55.8 bits (133), Expect = 5e-08
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 71 GPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVM-PCYS-KTQKLSKIET 128
GPK +K TK R+ R R KA+ RE+ RM L DAL LR + P YS + Q L+KI+T
Sbjct: 110 GPKAQKGTKVRMSVQRRR--KASEREKLRMRTLADALHTLRNYLPPVYSQRGQPLTKIQT 167
Query: 129 LRLARNYIWALSEVLETGQTPEGK 152
L+ YI L+++L G+ P +
Sbjct: 168 LKYTIKYIGELTDLLNRGREPRAQ 191
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 55.1 bits (131), Expect = 9e-08
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 73 KKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLA 132
+++ ++A L++ R AN RER RM +NDA + LR +P ++LSK++TLRLA
Sbjct: 152 RRRVRSEAELQQLRQA---ANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLA 208
Query: 133 RNYIWALSEVLETGQTPEGKG 153
YI LSE+++ G G
Sbjct: 209 IGYINFLSELVQADLPLRGGG 229
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 53.9 bits (128), Expect = 2e-07
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 88 RRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQ 147
+R ANARER R +N A LR ++P +KLSKIETLRLA +YI L+ VL G
Sbjct: 73 QRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVLLLGD 132
Query: 148 TPE-----------GKGFVEMLCKGLSQPTS 167
+ + KG V G QP S
Sbjct: 133 SADDGQPCFRAAGSAKGAVPAAADGGRQPRS 163
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 53.5 bits (127), Expect = 3e-07
Identities = 54/145 (37%), Positives = 68/145 (46%), Gaps = 21/145 (14%)
Query: 80 ARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKT-------QKLSKIETLRLA 132
A+ E+ + R K N+RER RM LN A+D LR V+ YS +KLSKI TL LA
Sbjct: 98 AKEEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLA 157
Query: 133 RNYIWALSEVLETGQTPEGKGFVEMLCKGLSQPTSNLVAG--CLQLGPQSVLLEKHEDKS 190
RNYI L L+ + G+G G + P L+AG L P SVLL
Sbjct: 158 RNYILLLGSSLQELRRALGEG------AGPAAPRL-LLAGLPLLAAAPGSVLLAPGAVGP 210
Query: 191 PICDSAISVHNFNYQSPGLPSPPYG 215
P ++ Y S L PP G
Sbjct: 211 P-----DALRPAKYLSLALDEPPCG 230
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 53.1 bits (126), Expect = 3e-07
Identities = 30/60 (50%), Positives = 38/60 (63%)
Query: 88 RRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQ 147
+R ANARER R + +N A LR ++P +KLSKIETLRLA +YI L VL G+
Sbjct: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 53.1 bits (126), Expect = 3e-07
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 83 ERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEV 142
E + +RV AN RER R LN+A LR+++P + KLSKI+TL+LA YI L +V
Sbjct: 104 EELQTQRVMANVRERQRTQSLNEAFAALRKIIPTL-PSDKLSKIQTLKLAARYIDFLYQV 162
Query: 143 LETGQ 147
L++ +
Sbjct: 163 LQSDE 167
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 53.1 bits (126), Expect = 3e-07
Identities = 30/60 (50%), Positives = 38/60 (63%)
Query: 88 RRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQ 147
+R ANARER R + +N A LR ++P +KLSKIETLRLA +YI L VL G+
Sbjct: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE 135
>gi|239756681 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 203
Score = 52.4 bits (124), Expect = 6e-07
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 79 KARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWA 138
+AR R +ARR+ AN RER R+ N+A + LRR + ++LSKI TLR A + I A
Sbjct: 57 RARPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAA 116
Query: 139 LSEVLETGQTPEG 151
LS VL P G
Sbjct: 117 LSLVLRASPAPRG 129
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 52.4 bits (124), Expect = 6e-07
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 79 KARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWA 138
+AR R +ARR+ AN RER R+ N+A + LRR + ++LSKI TLR A + I A
Sbjct: 57 RARPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAA 116
Query: 139 LSEVLETGQTPEG 151
LS VL P G
Sbjct: 117 LSLVLRASPAPRG 129
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 52.4 bits (124), Expect = 6e-07
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 79 KARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWA 138
+AR R +ARR+ AN RER R+ N+A + LRR + ++LSKI TLR A + I A
Sbjct: 57 RARPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAA 116
Query: 139 LSEVLETGQTPEG 151
LS VL P G
Sbjct: 117 LSLVLRASPAPRG 129
>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 52.4 bits (124), Expect = 6e-07
Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 54 IEEEEEEEEDGEKPKRRGPKKKKMTKARLERFRARRVKAN------ARERTRMHGLNDAL 107
+E EE E DG+ R +R E+ R RR A RER R+ N A
Sbjct: 38 LEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAF 97
Query: 108 DNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLE 144
LR+++P +KLSKIE LRLA YI L+ VL+
Sbjct: 98 AELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,897,474
Number of Sequences: 37866
Number of extensions: 792821
Number of successful extensions: 9583
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 6511
Number of HSP's gapped (non-prelim): 1952
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.