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Search of human proteins with 153791313
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153791313 cytochrome oxidase deficient homolog 2 [Homo
sapiens]
(266 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153791313 cytochrome oxidase deficient homolog 2 [Homo sapiens] 544 e-155
gi|4759068 cytochrome oxidase deficient homolog 1 [Homo sapiens] 211 5e-55
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ... 32 0.44
gi|219282747 KIAA1772 [Homo sapiens] 30 1.7
gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens] 30 2.2
gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens] 30 2.2
gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens] 30 2.2
gi|239757736 PREDICTED: hypothetical protein [Homo sapiens] 29 4.9
gi|26667257 eyes absent 4 isoform d [Homo sapiens] 29 4.9
gi|98991763 eyes absent 4 isoform b [Homo sapiens] 29 4.9
gi|98991760 eyes absent 4 isoform a [Homo sapiens] 29 4.9
gi|86792774 dipeptidyl-peptidase 6 isoform 1 [Homo sapiens] 28 6.4
gi|15055539 ribosomal protein S2 [Homo sapiens] 28 6.4
gi|145312251 EPH receptor A6 isoform a [Homo sapiens] 28 6.4
gi|7661566 integrator complex subunit 7 [Homo sapiens] 28 6.4
gi|116268113 transmembrane protein 99 [Homo sapiens] 28 6.4
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 28 8.3
gi|193082993 GTP binding protein 3 (mitochondrial) isoform III [... 28 8.3
gi|193082991 GTP binding protein 3 (mitochondrial) isoform V [Ho... 28 8.3
gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [H... 28 8.3
gi|149999371 hypothetical protein LOC91056 [Homo sapiens] 28 8.3
>gi|153791313 cytochrome oxidase deficient homolog 2 [Homo sapiens]
Length = 266
Score = 544 bits (1402), Expect = e-155
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MLLLTRSPTAWHRLSQLKPRVLPGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTR 60
MLLLTRSPTAWHRLSQLKPRVLPGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTR
Sbjct: 1 MLLLTRSPTAWHRLSQLKPRVLPGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTR 60
Query: 61 LLITGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFR 120
LLITGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFR
Sbjct: 61 LLITGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFR 120
Query: 121 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY 180
GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY
Sbjct: 121 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARY 180
Query: 181 VQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY 240
VQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY
Sbjct: 181 VQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY 240
Query: 241 YGRSRSAEQISDSVRRHMAAFRSVLS 266
YGRSRSAEQISDSVRRHMAAFRSVLS
Sbjct: 241 YGRSRSAEQISDSVRRHMAAFRSVLS 266
>gi|4759068 cytochrome oxidase deficient homolog 1 [Homo sapiens]
Length = 301
Score = 211 bits (537), Expect = 5e-55
Identities = 99/224 (44%), Positives = 151/224 (67%), Gaps = 2/224 (0%)
Query: 39 SRQGPAETGGQGQPQGPGLRTRLLITGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAA 98
S++GP ++ +P GP L IT G L ++ EK +++R + +
Sbjct: 77 SQKGPGDSTRPSKP-GPVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPL 135
Query: 99 VGQGDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLP 158
+G G F L H G + D+ GQW+L+YFGFTHCPD+CP+ELEK++QVV ++++ LP
Sbjct: 136 LG-GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLP 194
Query: 159 PVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQ 218
+ P+FI++DPERD EA+A YV++F P+L+GLTG+ ++V Q + +YRVYY+ GPKDED+
Sbjct: 195 DLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDE 254
Query: 219 DYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFR 262
DYIVDH+I +YL+ PDG F DY+G+++ +I+ S+ HM +R
Sbjct: 255 DYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYR 298
>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
sapiens]
Length = 190
Score = 32.3 bits (72), Expect = 0.44
Identities = 25/78 (32%), Positives = 31/78 (39%)
Query: 14 LSQLKPRVLPGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTRLLITGLFGAGLGG 73
+S L R L Q + + L R G A G G G G T TG GAG
Sbjct: 1 MSTLSGRPFSSLLLRQGDYRGATWLGRGGGAGPGQSGPGHGQGTATSWARTGESGAGPSP 60
Query: 74 AWLALRAEKERLQQQKRT 91
AW E R +Q+ R+
Sbjct: 61 AWRRCAGEASRGRQRARS 78
>gi|219282747 KIAA1772 [Homo sapiens]
Length = 1923
Score = 30.4 bits (67), Expect = 1.7
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 3 LLTRSPTAWHRLSQLKPRVLPGTLGG-QALHLRSWLLSRQGPAETGGQGQPQGPGLRT-- 59
LL + AW +S L+P + Q+L+ R W L+RQ A+ Q P G R
Sbjct: 1256 LLPHADVAW--VSSLRPLLNKDMSSEEQSLYYRQWTLARQHHADYSNQLDP-ASGTRNFH 1312
Query: 60 --RLLITGLFGAGLGGAWL 76
RLL+TG G G++L
Sbjct: 1313 PRRLLLTGPPQVGKTGSYL 1331
>gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
Length = 1179
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 30 ALHLRSWLLSRQGPAETGGQG---QPQGPGLRTRLLITGLFGAGLGGAWLALRAEKERLQ 86
ALHL LL G + GQG Q QGPG + G G G L + +LQ
Sbjct: 16 ALHLL--LLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQ 73
Query: 87 QQKRTEALRQ 96
QQ++ + +Q
Sbjct: 74 QQQQQQQQQQ 83
>gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]
Length = 1192
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 30 ALHLRSWLLSRQGPAETGGQG---QPQGPGLRTRLLITGLFGAGLGGAWLALRAEKERLQ 86
ALHL LL G + GQG Q QGPG + G G G L + +LQ
Sbjct: 16 ALHLL--LLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQ 73
Query: 87 QQKRTEALRQ 96
QQ++ + +Q
Sbjct: 74 QQQQQQQQQQ 83
>gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]
Length = 1203
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 30 ALHLRSWLLSRQGPAETGGQG---QPQGPGLRTRLLITGLFGAGLGGAWLALRAEKERLQ 86
ALHL LL G + GQG Q QGPG + G G G L + +LQ
Sbjct: 16 ALHLL--LLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQ 73
Query: 87 QQKRTEALRQ 96
QQ++ + +Q
Sbjct: 74 QQQQQQQQQQ 83
>gi|239757736 PREDICTED: hypothetical protein [Homo sapiens]
Length = 273
Score = 28.9 bits (63), Expect = 4.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 188 LLGLTGSTKQVAQASHSYRVYYNAGPKDEDQD 219
LLGL G + Q H+Y V Y+ GP Q+
Sbjct: 154 LLGLWGQCGPLQQKHHTYHVLYHNGPSPTHQE 185
>gi|26667257 eyes absent 4 isoform d [Homo sapiens]
Length = 639
Score = 28.9 bits (63), Expect = 4.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 63 ITGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAV 99
+ GL G AWL LRAE E L T AL+ ++
Sbjct: 499 VGGLLGPAKRDAWLQLRAEIEGLTDSWLTNALKSLSI 535
>gi|98991763 eyes absent 4 isoform b [Homo sapiens]
Length = 616
Score = 28.9 bits (63), Expect = 4.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 63 ITGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAV 99
+ GL G AWL LRAE E L T AL+ ++
Sbjct: 476 VGGLLGPAKRDAWLQLRAEIEGLTDSWLTNALKSLSI 512
>gi|98991760 eyes absent 4 isoform a [Homo sapiens]
Length = 639
Score = 28.9 bits (63), Expect = 4.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 63 ITGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAV 99
+ GL G AWL LRAE E L T AL+ ++
Sbjct: 499 VGGLLGPAKRDAWLQLRAEIEGLTDSWLTNALKSLSI 535
>gi|86792774 dipeptidyl-peptidase 6 isoform 1 [Homo sapiens]
Length = 865
Score = 28.5 bits (62), Expect = 6.4
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 35 SWLLSRQGPAETGGQG-QPQGPGLRTRLLITGLFGAGLGGAWLALRAEKERLQQQKRTE 92
S LL QGP E GG G +P GP R + G G GGA + R Q Q R++
Sbjct: 25 SHLLGGQGPEEDGGAGAKPLGP--RAQAAAPRERGGGGGGA-----GGRPRFQYQARSD 76
>gi|15055539 ribosomal protein S2 [Homo sapiens]
Length = 293
Score = 28.5 bits (62), Expect = 6.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 47 GGQGQPQGPGLRTRLLITGLFGAGLGG 73
GG G P GPG+ R G FG+G+ G
Sbjct: 9 GGPGGPGGPGMGNRGGFRGGFGSGIRG 35
>gi|145312251 EPH receptor A6 isoform a [Homo sapiens]
Length = 1130
Score = 28.5 bits (62), Expect = 6.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 138 PDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDF 184
P L LV+ + + PG P P+F+TV D ++ M +Y +F
Sbjct: 1031 PSALHTLVEDILVMPESPGEVPEYPLFVTVGDWLDSIK-MGQYKNNF 1076
>gi|7661566 integrator complex subunit 7 [Homo sapiens]
Length = 962
Score = 28.5 bits (62), Expect = 6.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 221 IVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFRSVL 265
++ H+I +L+P+ YG + +A S+ RR M+ + VL
Sbjct: 712 LISHAIEALILDPESASFQEYGSTGTAHADSEYERRMMSVYNHVL 756
>gi|116268113 transmembrane protein 99 [Homo sapiens]
Length = 258
Score = 28.5 bits (62), Expect = 6.4
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 54 GPGLRTRLLITGLFGAG--------LGGAWLALRAEKERLQQQKRTEALRQAAVGQG 102
G LR LL+ L G G GG+W +L ++ L Q A A+G G
Sbjct: 88 GHRLREGLLLPCLLGVGSWLLFNNWTGGSWFSLHLQQVSLSQGSHVAAFLPEAIGPG 144
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 28.1 bits (61), Expect = 8.3
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 43 PAETGGQGQPQGPGLRTRLLITGLFGAGLGGAWLALRAEKERLQQQKRTEALRQ 96
PA GG G GP T +L G G LAL E RL +KR +A+ +
Sbjct: 83 PAPDGGPGPGSGPAAPTTVLRAPRCGRG-----LALGRELLRLAGRKRPDAVHR 131
>gi|193082993 GTP binding protein 3 (mitochondrial) isoform III
[Homo sapiens]
Length = 471
Score = 28.1 bits (61), Expect = 8.3
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 34 RSWLLSRQGPAETGGQGQPQGPGLRTRLLITGLFGAGLGGAWLALRAE 81
+S LLS +GP GP L LL++ L G GL G ALR E
Sbjct: 354 KSDLLSPEGPGP--------GPDLPPHLLLSCLTGEGLDGLLEALRKE 393
>gi|193082991 GTP binding protein 3 (mitochondrial) isoform V [Homo
sapiens]
Length = 492
Score = 28.1 bits (61), Expect = 8.3
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 34 RSWLLSRQGPAETGGQGQPQGPGLRTRLLITGLFGAGLGGAWLALRAE 81
+S LLS +GP GP L LL++ L G GL G ALR E
Sbjct: 375 KSDLLSPEGPGP--------GPDLPPHLLLSCLTGEGLDGLLEALRKE 414
>gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [Homo
sapiens]
Length = 524
Score = 28.1 bits (61), Expect = 8.3
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 34 RSWLLSRQGPAETGGQGQPQGPGLRTRLLITGLFGAGLGGAWLALRAE 81
+S LLS +GP GP L LL++ L G GL G ALR E
Sbjct: 407 KSDLLSPEGPGP--------GPDLPPHLLLSCLTGEGLDGLLEALRKE 446
>gi|149999371 hypothetical protein LOC91056 [Homo sapiens]
Length = 821
Score = 28.1 bits (61), Expect = 8.3
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 23 PGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTRLLITGLFGAGLGG 73
PG LGG +L L LL ++GP + LR L++ GAGLGG
Sbjct: 105 PGLLGG-SLGLLRGLLGQEGPVQP--LSLLLALALRNTLVLQSRVGAGLGG 152
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,213,874
Number of Sequences: 37866
Number of extensions: 545146
Number of successful extensions: 1737
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1727
Number of HSP's gapped (non-prelim): 22
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.