Guide to the Human Genome
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Name: FAM178B Sequence: fasta or formatted (119aa) NCBI GI: 31745176
Description:

hypothetical protein LOC51252 isoform B

Not currently referenced in the text

Other entries for this name:
alt prot {647aa} hypothetical protein LOC51252 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9          7           1
 C cysteine            5.0          6           1
 D aspartate           5.9          7           1
 E glutamate           4.2          5           1
 F phenylalanine       0.8          1           1
 G glycine             1.7          2           1
 H histidine           4.2          5           1
 I isoleucine          4.2          5           1
 K lysine              3.4          4           1
 L leucine            13.4         16           2
 M methionine          4.2          5           1
 N asparagine          0.0          0           0
 P proline             7.6          9           2
 Q glutamine          12.6         15           2
 R arginine            5.0          6           1
 S serine              7.6          9           2
 T threonine           5.0          6           1
 V valine              3.4          4           3
 W tryptophan          2.5          3           1
 Y tyrosine            3.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC51252 isoform B 
FAM178B               1.000   hypothetical protein LOC51252 isoform A 
FAM178A               0.162   hypothetical protein LOC55719 isoform 1 
FAM178A               0.158   hypothetical protein LOC55719 isoform 2 
BCL11A                0.022   B-cell CLL/lymphoma 11A isoform 1 
BCL11A                0.022   B-cell CLL/lymphoma 11A isoform 2 
SMAP2                 0.013   small ArfGAP2 
PEX1                  0.013   peroxin1 
C17orf76              0.009   hypothetical protein LOC388341 isoform 1 
CAGE1                 0.004   cancer antigen 1 
PPP1R9B               0.004   protein phosphatase 1, regulatory subunit 9B 
MED12                 0.004   mediator complex subunit 12 
SMAP1                 0.004   stromal membrane-associated GTPase-activating prote...
SMAP1                 0.004   stromal membrane-associated GTPase-activating protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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