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Search of human proteins with 15011862
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15011862 plexin domain containing 1 precursor [Homo sapiens]
(500 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15011862 plexin domain containing 1 precursor [Homo sapiens] 1041 0.0
gi|40255005 plexin domain containing 2 precursor [Homo sapiens] 499 e-141
gi|5032223 plexin C1 [Homo sapiens] 40 0.004
gi|194272180 plexin B1 [Homo sapiens] 37 0.032
gi|40254442 plexin B1 [Homo sapiens] 37 0.032
gi|59710104 plexin A3 [Homo sapiens] 35 0.16
gi|119703744 desmoglein 1 preproprotein [Homo sapiens] 35 0.21
gi|113722116 plexin A2 [Homo sapiens] 34 0.27
gi|239749115 PREDICTED: hypothetical protein [Homo sapiens] 33 0.79
gi|49355818 plexin A1 [Homo sapiens] 33 0.79
gi|223278407 MORN repeat containing 5 [Homo sapiens] 32 1.8
gi|39753957 lamina-associated polypeptide 1B [Homo sapiens] 32 1.8
gi|222418604 hypothetical protein LOC257407 [Homo sapiens] 31 2.3
gi|42741655 met proto-oncogene isoform b precursor [Homo sapiens] 30 6.7
gi|188595716 met proto-oncogene isoform a precursor [Homo sapiens] 30 6.7
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 29 8.7
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 29 8.7
gi|157738645 plexin A4 isoform 1 [Homo sapiens] 29 8.7
gi|167736355 mucin 4 isoform a [Homo sapiens] 29 8.7
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens] 29 8.7
gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo s... 29 8.7
>gi|15011862 plexin domain containing 1 precursor [Homo sapiens]
Length = 500
Score = 1041 bits (2691), Expect = 0.0
Identities = 500/500 (100%), Positives = 500/500 (100%)
Query: 1 MRGELWLLVLVLREAARALSPQPGAGHDEGPGSGWAAKGTVRGWNRRARESPGHVSEPDR 60
MRGELWLLVLVLREAARALSPQPGAGHDEGPGSGWAAKGTVRGWNRRARESPGHVSEPDR
Sbjct: 1 MRGELWLLVLVLREAARALSPQPGAGHDEGPGSGWAAKGTVRGWNRRARESPGHVSEPDR 60
Query: 61 TQLSQDLGGGTLAMDTLPDNRTRVVEDNHSYYVSRLYGPSEPHSRELWVDVAEANRSQVK 120
TQLSQDLGGGTLAMDTLPDNRTRVVEDNHSYYVSRLYGPSEPHSRELWVDVAEANRSQVK
Sbjct: 61 TQLSQDLGGGTLAMDTLPDNRTRVVEDNHSYYVSRLYGPSEPHSRELWVDVAEANRSQVK 120
Query: 121 IHTILSNTHRQASRVVLSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMA 180
IHTILSNTHRQASRVVLSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMA
Sbjct: 121 IHTILSNTHRQASRVVLSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMA 180
Query: 181 NFNPGYSDNSTVVYFDNGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFAYKEIPM 240
NFNPGYSDNSTVVYFDNGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFAYKEIPM
Sbjct: 181 NFNPGYSDNSTVVYFDNGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFAYKEIPM 240
Query: 241 SVPEISSSQHPVKTGLSDAFMILNPSPDVPESRRRSIFEYHRIELDPSKVTSMSAVEFTP 300
SVPEISSSQHPVKTGLSDAFMILNPSPDVPESRRRSIFEYHRIELDPSKVTSMSAVEFTP
Sbjct: 241 SVPEISSSQHPVKTGLSDAFMILNPSPDVPESRRRSIFEYHRIELDPSKVTSMSAVEFTP 300
Query: 301 LPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWMDYGCAQEAEGRMCEDFQ 360
LPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWMDYGCAQEAEGRMCEDFQ
Sbjct: 301 LPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWMDYGCAQEAEGRMCEDFQ 360
Query: 361 DEDHDSASPDTSFSPYDGDLTTTSSSLFIDSLTTEDDTKLNPYAGGDGLQNNLSPKTKGT 420
DEDHDSASPDTSFSPYDGDLTTTSSSLFIDSLTTEDDTKLNPYAGGDGLQNNLSPKTKGT
Sbjct: 361 DEDHDSASPDTSFSPYDGDLTTTSSSLFIDSLTTEDDTKLNPYAGGDGLQNNLSPKTKGT 420
Query: 421 PVHLGTIVGIVLAVLLVAAIILAGIYINGHPTSNAALFFIERRPHHWPAMKFRSHPDHST 480
PVHLGTIVGIVLAVLLVAAIILAGIYINGHPTSNAALFFIERRPHHWPAMKFRSHPDHST
Sbjct: 421 PVHLGTIVGIVLAVLLVAAIILAGIYINGHPTSNAALFFIERRPHHWPAMKFRSHPDHST 480
Query: 481 YAEVEPSGHEKEGFMEAEQC 500
YAEVEPSGHEKEGFMEAEQC
Sbjct: 481 YAEVEPSGHEKEGFMEAEQC 500
>gi|40255005 plexin domain containing 2 precursor [Homo sapiens]
Length = 529
Score = 499 bits (1285), Expect = e-141
Identities = 249/436 (57%), Positives = 322/436 (73%), Gaps = 8/436 (1%)
Query: 72 LAMDTLPDNRTRVVED-NHSYYVSRLYGPSEPHSRELWVDVAEANRSQVKIHTILSNTHR 130
L +D DN T++ ED +H+YY+SR+YGPS+ SR+LWV++ + + +VKIH ILSNTHR
Sbjct: 95 LLLDDGQDNNTQIEEDTDHNYYISRIYGPSDSASRDLWVNIDQMEKDKVKIHGILSNTHR 154
Query: 131 QASRVVLSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNS 190
QA+RV LSFDFPFYGH LR+IT+ATGGFI+ G+V+HRMLTATQY+APLMANF+P S NS
Sbjct: 155 QAARVNLSFDFPFYGHFLREITVATGGFIYTGEVVHRMLTATQYIAPLMANFDPSVSRNS 214
Query: 191 TVVYFDNGTVFVVQWDHVYLQGWEDKGSFTFQAALHHDGRIVFAYKEIPMSVPEISSSQH 250
TV YFDNGT VVQWDHV+LQ + GSFTFQA L DGRI+F YKEIP+ V +ISS+ H
Sbjct: 215 TVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRIIFGYKEIPVLVTQISSTNH 274
Query: 251 PVKTGLSDAFMILNPSPDVPESRRRSIFEYHRIELDPSKVTSMSAVEFTPLPTCLQHRSC 310
PVK GLSDAF++++ +P RRR+I+EYHR+EL SK+T++SAVE TPLPTCLQ C
Sbjct: 275 PVKVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAVEMTPLPTCLQFNRC 334
Query: 311 DACMSSDLTFNCSWCHVLQRCSSGFDRYRQEWMDYGCAQEAEGRMCEDFQDEDHDSASPD 370
C+SS + FNCSWC LQRCSSGFDR+RQ+W+D GC +E++ +MCE+ + + S +
Sbjct: 335 GPCVSSQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEESKEKMCENTEPVETSSRTTT 394
Query: 371 T--SFSPYDGDLTTTS---SSLFIDSLTTEDDTKLNPYAGGDGLQ-NNLSPKTKGTPVHL 424
T + + LTTT +S F SL TEDDTK+ + +G ++ + + KG +H
Sbjct: 395 TVGATTTQFRVLTTTRRAVTSQFPTSLPTEDDTKIALHLKDNGASTDDSAAEKKGGTLHA 454
Query: 425 GTIVGIVLAVLLVAAIILAGIYINGHPTSNAALFFIERRPHHWPAMKFRSHPDHSTYAEV 484
G I+GI++ VL+VA IL +Y+ HPTS A++FFIERRP WPAMKFR H YAEV
Sbjct: 455 GLIIGILILVLIVATAILVTVYMYHHPTSAASIFFIERRPSRWPAMKFRRGSGHPAYAEV 514
Query: 485 EPSGHEKEGFMEAEQC 500
EP G EKEGF+ +EQC
Sbjct: 515 EPVG-EKEGFIVSEQC 529
>gi|5032223 plexin C1 [Homo sapiens]
Length = 1568
Score = 40.4 bits (93), Expect = 0.004
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 280 YHRIELDPSK-----VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSG 334
++++ DP K +T+ V + C +H+SC C+++ +C WCH LQRC+
Sbjct: 426 FYKLVPDPVKNIYIYLTAGKEVRRIRVANCNKHKSCSECLTATDP-HCGWCHSLQRCTFQ 484
Query: 335 FDRYRQE----WMD 344
D E W+D
Sbjct: 485 GDCVHSENLENWLD 498
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 37.4 bits (85), Expect = 0.032
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 290 VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYR----QEWM-- 343
V + S + P+ +C QH C +C++ + C WC +L RCS + R ++W+
Sbjct: 468 VMTQSTLLKVPVASCAQHLDCASCLAHRDPY-CGWCVLLGRCSRRSECSRGQGPEQWLWS 526
Query: 344 ---DYGCAQEA 351
+ GC Q A
Sbjct: 527 FQPELGCLQVA 537
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 37.4 bits (85), Expect = 0.032
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 290 VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYR----QEWM-- 343
V + S + P+ +C QH C +C++ + C WC +L RCS + R ++W+
Sbjct: 468 VMTQSTLLKVPVASCAQHLDCASCLAHRDPY-CGWCVLLGRCSRRSECSRGQGPEQWLWS 526
Query: 344 ---DYGCAQEA 351
+ GC Q A
Sbjct: 527 FQPELGCLQVA 537
>gi|59710104 plexin A3 [Homo sapiens]
Length = 1871
Score = 35.0 bits (79), Expect = 0.16
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 292 SMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRC 331
S V P+ TC Q++SC AC+ S +C WC + RC
Sbjct: 479 SEKQVSQLPVETCEQYQSCAACLGSG-DPHCGWCVLRHRC 517
Score = 33.5 bits (75), Expect = 0.46
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 306 QHRSCDACMSSDLTFNCSWCHVLQRC 331
Q SC C+ +D FNC WC RC
Sbjct: 789 QRPSCGLCLKADPRFNCGWCISEHRC 814
>gi|119703744 desmoglein 1 preproprotein [Homo sapiens]
Length = 1049
Score = 34.7 bits (78), Expect = 0.21
Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 357 EDFQDEDHDSASPDTSFSPYDGDLTTTSSSLFIDSLTTEDDTKLNPYAGGDGLQNNLSPK 416
+ F ++D + P+T + G +TSS+ + S T+ D +++ G+G ++ LS
Sbjct: 484 QSFGNDDRTNTEPNTKITTNTGRQESTSSTNYDTSTTSTDSSQVYSSEPGNGAKDLLSDN 543
Query: 417 TKGTPVHLGTIVGIVLAVLLVAAIIL 442
P +G ++ L + LV +++
Sbjct: 544 VHFGPAGIGLLIMGFLVLGLVPFLMI 569
>gi|113722116 plexin A2 [Homo sapiens]
Length = 1894
Score = 34.3 bits (77), Expect = 0.27
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 290 VTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCSSGFDRYRQEW 342
V S V P+ +C Q+ +C C+SS +C WC + CS D+ +Q W
Sbjct: 497 VMSERQVTRVPVESCEQYTTCGECLSSG-DPHCGWCALHNMCSRR-DKCQQAW 547
Score = 33.5 bits (75), Expect = 0.46
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 306 QHRSCDACMSSDLTFNCSWCHVLQRCS 332
Q SC C+ +D F C WC +RC+
Sbjct: 807 QRESCGLCLKADRKFECGWCSGERRCT 833
>gi|239749115 PREDICTED: hypothetical protein [Homo sapiens]
Length = 337
Score = 32.7 bits (73), Expect = 0.79
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 19 LSPQPGAGHDEGPGSGWAAKGTVRGWNRRARESPGHV 55
LS QP H GPG A+G RG R AR+SPGH+
Sbjct: 96 LSAQPQCSHLGGPG----ARGRARG--RAARDSPGHL 126
>gi|49355818 plexin A1 [Homo sapiens]
Length = 1873
Score = 32.7 bits (73), Expect = 0.79
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 309 SCDACMSSDLTFNCSWCHVLQRCS 332
SC C+ +D F C WC +RCS
Sbjct: 792 SCGLCLKADPRFECGWCVAERRCS 815
Score = 31.2 bits (69), Expect = 2.3
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 300 PLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCS 332
P+ +C+Q+ SC+ C+ S +C WC + CS
Sbjct: 488 PVESCVQYTSCELCLGS-RDPHCGWCVLHSICS 519
>gi|223278407 MORN repeat containing 5 [Homo sapiens]
Length = 161
Score = 31.6 bits (70), Expect = 1.8
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 157 GFIFMGDVIH-RMLTATQYVAPL----MANFNPGYSDNSTVVYFDNGTVFVVQWDHVYLQ 211
G ++G+ + RM +Y+ P + G +YF +G+ Q+D ++
Sbjct: 5 GSKYIGEYVDGRMEGKAKYILPTETIYVGEMKDGMFHGEGTLYFPSGS----QYDAIWEN 60
Query: 212 GWEDKGSFTFQAALHHD 228
G KG++TF LH+D
Sbjct: 61 GLAIKGTYTFSDGLHYD 77
>gi|39753957 lamina-associated polypeptide 1B [Homo sapiens]
Length = 583
Score = 31.6 bits (70), Expect = 1.8
Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 17/133 (12%)
Query: 263 LNPSPDVPESRRRSIFEYHRIELDP-SKVTSMSAVEFTPLPTCLQHRSCDACMSSDLTFN 321
L PSP + RR + + H E D S T +S +Q +A +S DL
Sbjct: 140 LQPSPVMT---RRGLRDSHSSEEDEASSQTDLSQTISKKTVRSIQ----EAPVSEDLVIR 192
Query: 322 CSWCHVLQRCSSGFDRYRQEWMDYGCAQEAEGRMCEDFQDEDHDSASP---DTSFSPYDG 378
L+R + RY + EG ED QD H S + + S G
Sbjct: 193 ------LRRPPLRYPRYEATSVQQKVNFSEEGETEEDDQDSSHSSVTTVKARSRDSDESG 246
Query: 379 DLTTTSSSLFIDS 391
D TT SSS +I+S
Sbjct: 247 DKTTRSSSQYIES 259
>gi|222418604 hypothetical protein LOC257407 [Homo sapiens]
Length = 295
Score = 31.2 bits (69), Expect = 2.3
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 3 GELWLLV---LVLREAARAL-SPQPGAGHDEGPGSGWAAKGTVRGWNRRAR 49
GELW +LR+ ARA+ P+PGA G + A G RG R AR
Sbjct: 37 GELWEREQSRALLRDFARAVFPPEPGAAKPGGAAAEGAGPGAARGAQRAAR 87
>gi|42741655 met proto-oncogene isoform b precursor [Homo sapiens]
Length = 1390
Score = 29.6 bits (65), Expect = 6.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 304 CLQHRSCDACMSSDLTFNCSWCH 326
C +SC C+S+ C WCH
Sbjct: 520 CRHFQSCSQCLSAPPFVQCGWCH 542
>gi|188595716 met proto-oncogene isoform a precursor [Homo sapiens]
Length = 1408
Score = 29.6 bits (65), Expect = 6.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 304 CLQHRSCDACMSSDLTFNCSWCH 326
C +SC C+S+ C WCH
Sbjct: 520 CRHFQSCSQCLSAPPFVQCGWCH 542
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 8.7
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 11 VLREAARALSPQPGAGHDEGPGSGWAAKGTVRG--W-------NRRARESPGHVSEPDRT 61
V R RA SP+ GAG EG G+G T+ G W +R R +P H+ E + T
Sbjct: 120 VRRRRRRAPSPR-GAGWREGAGAGRGTPATMAGGEWAAEPLHLPQRGRPAPLHLPEREAT 178
Query: 62 Q 62
+
Sbjct: 179 E 179
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 29.3 bits (64), Expect = 8.7
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 11 VLREAARALSPQPGAGHDEGPGSGWAAKGTVRG--W-------NRRARESPGHVSEPDRT 61
V R RA SP+ GAG EG G+G T+ G W +R R +P H+ E + T
Sbjct: 120 VRRRRRRAPSPR-GAGWREGAGAGRGTPATMAGGEWAAEPLHLPQRGRPAPLHLPEREAT 178
Query: 62 Q 62
+
Sbjct: 179 E 179
>gi|157738645 plexin A4 isoform 1 [Homo sapiens]
Length = 1894
Score = 29.3 bits (64), Expect = 8.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 286 DPSKVTSMSAVEFT--PLPTCLQHRSCDACMSSDLTFNCSWCHVLQRCS 332
D ++ MS + T P+ +C Q++SC C+ S +C WC + C+
Sbjct: 490 DHEQLYIMSERQLTRVPVESCGQYQSCGECLGSG-DPHCGWCVLHNTCT 537
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 29.3 bits (64), Expect = 8.7
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 238 IPMSVPEISSSQHPVKTGLSDAFMI-LNPSPDVPESRRRSIFEYHRIELDPSKVTSMSAV 296
+P+++P +SS H ++DA + + +P + S+ H L + +S+S
Sbjct: 2705 LPVTIPSSASSGHTTPLPVTDASSVSTGHATSLPVTDASSVSTGHATPLPVTDASSVSTG 2764
Query: 297 EFTPLP 302
TPLP
Sbjct: 2765 HATPLP 2770
>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
Length = 4857
Score = 29.3 bits (64), Expect = 8.7
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 273 RRRSIFEYHRIELDPSKVTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSW---CH 326
R R E+ R LD T+ + E PLP L H C + + + F S CH
Sbjct: 2291 RLRRTAEWSRSNLDTEVTTAKESPEIEPLPFTLAHERCISVVQKLVLFLLSMDFTCH 2347
>gi|4506813 sodium channel, voltage-gated, type IX, alpha [Homo
sapiens]
Length = 1977
Score = 29.3 bits (64), Expect = 8.7
Identities = 59/258 (22%), Positives = 104/258 (40%), Gaps = 35/258 (13%)
Query: 154 ATGGFIFMGDVIHRMLTATQ-YVAPLMANFNPGYSDNSTVVYFDNGTVFVVQW---DHVY 209
+ G F F+ +I L Y+A ++ NF+ +++ + D+ +F W D
Sbjct: 1723 SVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDA 1782
Query: 210 LQGWEDKGSFTFQAALHHDGRIVFA----YKEIPMSVPEISSSQ-HPVKTGLSDAFMILN 264
Q E F AAL D ++ A + I M +P +S + H + + +L
Sbjct: 1783 TQFIEFSKLSDFAAAL--DPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLG 1840
Query: 265 PSPDVPESRRRSIFEYHRIELDPSKVTSMSAVEFTPLPTCLQHRSCDACMSSDLTFNCSW 324
S ++ RS E + +PSKV+ + P+ T L+ + D +
Sbjct: 1841 ESGEM--DSLRSQMEERFMSANPSKVS------YEPITTTLKRKQEDVSAT--------- 1883
Query: 325 CHVLQRCSSGFDRYRQEWMDYGCAQEAEGRMCEDF---QDEDHDSASPDTSFSPYDGDLT 381
V+QR + R RQ + +G +D +D D+ + ++S D +
Sbjct: 1884 --VIQRAYRRY-RLRQNVKNISSIYIKDGDRDDDLLNKKDMAFDNVNENSSPEKTDATSS 1940
Query: 382 TTSSSLFIDSLTTEDDTK 399
TTS + DS+T D K
Sbjct: 1941 TTSPPSY-DSVTKPDKEK 1957
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,040,949
Number of Sequences: 37866
Number of extensions: 1003990
Number of successful extensions: 2660
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2637
Number of HSP's gapped (non-prelim): 33
length of query: 500
length of database: 18,247,518
effective HSP length: 106
effective length of query: 394
effective length of database: 14,233,722
effective search space: 5608086468
effective search space used: 5608086468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.