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Search of human proteins with 149193319
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149193319 G-rich RNA sequence binding factor 1 isoform 2
[Homo sapiens]
(318 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Hom... 643 0.0
gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Hom... 643 0.0
gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sap... 245 3e-65
gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sap... 245 3e-65
gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sap... 245 3e-65
gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sap... 245 3e-65
gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sap... 245 3e-65
gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] 245 3e-65
gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo sapi... 179 2e-45
gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sap... 179 3e-45
gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapi... 179 3e-45
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens] 116 3e-26
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens] 116 3e-26
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens] 116 3e-26
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens] 116 3e-26
gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens] 116 3e-26
gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a... 115 4e-26
gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b... 115 4e-26
gi|45935393 RNA binding motif protein 35B [Homo sapiens] 112 3e-25
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 84 1e-16
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 84 1e-16
gi|118722349 RNA binding motif protein 12B [Homo sapiens] 83 4e-16
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 62 9e-10
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 62 9e-10
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 62 9e-10
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 42 7e-04
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 42 7e-04
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 42 7e-04
gi|50053795 eukaryotic translation initiation factor 4B [Homo sa... 42 0.001
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 37 0.023
>gi|149193321 G-rich RNA sequence binding factor 1 isoform 1 [Homo
sapiens]
Length = 480
Score = 643 bits (1659), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV
Sbjct: 163 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 222
Query: 61 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 120
EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM
Sbjct: 223 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 282
Query: 121 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA 180
DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA
Sbjct: 283 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA 342
Query: 181 SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF 240
SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF
Sbjct: 343 SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF 402
Query: 241 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS 300
VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS
Sbjct: 403 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS 462
Query: 301 HVHHRYIELFLNSCPKGK 318
HVHHRYIELFLNSCPKGK
Sbjct: 463 HVHHRYIELFLNSCPKGK 480
Score = 89.7 bits (221), Expect = 3e-18
Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 62/228 (27%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
++R +GLP+SC +D+++FF+ I + I F+++ G+R+ G+A ++ E + +A
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR-GDALIEMESEQDVQKA 209
Query: 145 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 204
L KHR +G RY+E++ +V + K ++ S P VN+ +
Sbjct: 210 LEKHRMYMGQRYVEVYEINNEDVDALM---KSLQVKSSPV---------------VNDGV 251
Query: 205 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKP 264
V +RGLP+ N +DI++FFA L
Sbjct: 252 ------------------------------------VRLRGLPYSCNEKDIVDFFAGLNI 275
Query: 265 VRIT--MEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
V IT M+Y K TGEA V FE E A A+LK R + +RYIE+F
Sbjct: 276 VDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREEIGNRYIEIF 322
Score = 48.5 bits (114), Expect = 8e-06
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 25/136 (18%)
Query: 180 ASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLH 239
A+ PT Y E + + E D+ P +E P KL E D +
Sbjct: 110 AAVPTRSYSQESKTTYLE-----DLPPPPEYEL---------APSKLEEEVD-----DVF 150
Query: 240 FVHMRGLPFQANAQDIINFFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAA 294
+ +GLP+ +D++NFF+ + +R I + GK G+A + E+ +D A
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA 209
Query: 295 MLKDRSHVHHRYIELF 310
+ K R ++ RY+E++
Sbjct: 210 LEKHRMYMGQRYVEVY 225
>gi|149193319 G-rich RNA sequence binding factor 1 isoform 2 [Homo
sapiens]
Length = 318
Score = 643 bits (1659), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV
Sbjct: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
Query: 61 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 120
EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM
Sbjct: 61 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVM 120
Query: 121 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA 180
DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA
Sbjct: 121 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIA 180
Query: 181 SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF 240
SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF
Sbjct: 181 SFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHF 240
Query: 241 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS 300
VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS
Sbjct: 241 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRS 300
Query: 301 HVHHRYIELFLNSCPKGK 318
HVHHRYIELFLNSCPKGK
Sbjct: 301 HVHHRYIELFLNSCPKGK 318
>gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 245 bits (626), Expect = 3e-65
Identities = 142/342 (41%), Positives = 200/342 (58%), Gaps = 31/342 (9%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
+EDV NF SDC I +G G+HF+ R+G++ G+A +E+ SE DV+ AL+K R MG RY+
Sbjct: 24 VEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 83
Query: 61 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITF 118
EV++ + ++D ++K S+ NDG VRLRGLP+ C +++IV FF+GL IV IT
Sbjct: 84 EVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL 143
Query: 119 VMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT--------- 169
+D G + TGEA+VQF E+A +AL KH+E IG+RYIE+F S + EVR+
Sbjct: 144 PVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM 202
Query: 170 ----------------HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTA--FE 211
++G K + Y T +EE+ D T F
Sbjct: 203 SVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GYGGYEEYSGLSDGYGFTTDLFG 261
Query: 212 SEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEY 271
+ L + ++ +++ H VHMRGLP++A DI NFF+PL PVR+ +E
Sbjct: 262 RDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
Query: 272 SSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
G+ TGEADV F THE+AVAAM KDR+++ HRYIELFLNS
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 363
Score = 64.3 bits (155), Expect = 1e-10
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
VV+LRGLP+SC+ +D+ +F + I D + F+ G R++GEA+V+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG-RQSGEAFVELGSEDDVKMA 70
Query: 145 LLKHREEIGNRYIEIFPSRRNEV 167
L K RE +G+RYIE+F S R E+
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEM 93
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 296
V +RGLP+ + +D+ NF + + Y+ G+ +GEA V + +D A+
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 297 KDRSHVHHRYIELF 310
KDR + HRYIE+F
Sbjct: 73 KDRESMGHRYIEVF 86
>gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 245 bits (626), Expect = 3e-65
Identities = 142/342 (41%), Positives = 200/342 (58%), Gaps = 31/342 (9%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
+EDV NF SDC I +G G+HF+ R+G++ G+A +E+ SE DV+ AL+K R MG RY+
Sbjct: 24 VEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 83
Query: 61 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITF 118
EV++ + ++D ++K S+ NDG VRLRGLP+ C +++IV FF+GL IV IT
Sbjct: 84 EVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL 143
Query: 119 VMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT--------- 169
+D G + TGEA+VQF E+A +AL KH+E IG+RYIE+F S + EVR+
Sbjct: 144 PVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM 202
Query: 170 ----------------HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTA--FE 211
++G K + Y T +EE+ D T F
Sbjct: 203 SVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GYGGYEEYSGLSDGYGFTTDLFG 261
Query: 212 SEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEY 271
+ L + ++ +++ H VHMRGLP++A DI NFF+PL PVR+ +E
Sbjct: 262 RDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
Query: 272 SSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
G+ TGEADV F THE+AVAAM KDR+++ HRYIELFLNS
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 363
Score = 64.3 bits (155), Expect = 1e-10
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
VV+LRGLP+SC+ +D+ +F + I D + F+ G R++GEA+V+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG-RQSGEAFVELGSEDDVKMA 70
Query: 145 LLKHREEIGNRYIEIFPSRRNEV 167
L K RE +G+RYIE+F S R E+
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEM 93
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 296
V +RGLP+ + +D+ NF + + Y+ G+ +GEA V + +D A+
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 297 KDRSHVHHRYIELF 310
KDR + HRYIE+F
Sbjct: 73 KDRESMGHRYIEVF 86
>gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 245 bits (626), Expect = 3e-65
Identities = 142/342 (41%), Positives = 200/342 (58%), Gaps = 31/342 (9%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
+EDV NF SDC I +G G+HF+ R+G++ G+A +E+ SE DV+ AL+K R MG RY+
Sbjct: 24 VEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 83
Query: 61 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITF 118
EV++ + ++D ++K S+ NDG VRLRGLP+ C +++IV FF+GL IV IT
Sbjct: 84 EVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL 143
Query: 119 VMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT--------- 169
+D G + TGEA+VQF E+A +AL KH+E IG+RYIE+F S + EVR+
Sbjct: 144 PVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM 202
Query: 170 ----------------HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTA--FE 211
++G K + Y T +EE+ D T F
Sbjct: 203 SVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GYGGYEEYSGLSDGYGFTTDLFG 261
Query: 212 SEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEY 271
+ L + ++ +++ H VHMRGLP++A DI NFF+PL PVR+ +E
Sbjct: 262 RDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
Query: 272 SSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
G+ TGEADV F THE+AVAAM KDR+++ HRYIELFLNS
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 363
Score = 64.3 bits (155), Expect = 1e-10
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
VV+LRGLP+SC+ +D+ +F + I D + F+ G R++GEA+V+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG-RQSGEAFVELGSEDDVKMA 70
Query: 145 LLKHREEIGNRYIEIFPSRRNEV 167
L K RE +G+RYIE+F S R E+
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEM 93
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 296
V +RGLP+ + +D+ NF + + Y+ G+ +GEA V + +D A+
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 297 KDRSHVHHRYIELF 310
KDR + HRYIE+F
Sbjct: 73 KDRESMGHRYIEVF 86
>gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 245 bits (626), Expect = 3e-65
Identities = 142/342 (41%), Positives = 200/342 (58%), Gaps = 31/342 (9%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
+EDV NF SDC I +G G+HF+ R+G++ G+A +E+ SE DV+ AL+K R MG RY+
Sbjct: 24 VEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 83
Query: 61 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITF 118
EV++ + ++D ++K S+ NDG VRLRGLP+ C +++IV FF+GL IV IT
Sbjct: 84 EVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL 143
Query: 119 VMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT--------- 169
+D G + TGEA+VQF E+A +AL KH+E IG+RYIE+F S + EVR+
Sbjct: 144 PVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM 202
Query: 170 ----------------HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTA--FE 211
++G K + Y T +EE+ D T F
Sbjct: 203 SVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GYGGYEEYSGLSDGYGFTTDLFG 261
Query: 212 SEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEY 271
+ L + ++ +++ H VHMRGLP++A DI NFF+PL PVR+ +E
Sbjct: 262 RDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
Query: 272 SSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
G+ TGEADV F THE+AVAAM KDR+++ HRYIELFLNS
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 363
Score = 64.3 bits (155), Expect = 1e-10
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
VV+LRGLP+SC+ +D+ +F + I D + F+ G R++GEA+V+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG-RQSGEAFVELGSEDDVKMA 70
Query: 145 LLKHREEIGNRYIEIFPSRRNEV 167
L K RE +G+RYIE+F S R E+
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEM 93
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 296
V +RGLP+ + +D+ NF + + Y+ G+ +GEA V + +D A+
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 297 KDRSHVHHRYIELF 310
KDR + HRYIE+F
Sbjct: 73 KDRESMGHRYIEVF 86
>gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 245 bits (626), Expect = 3e-65
Identities = 142/342 (41%), Positives = 200/342 (58%), Gaps = 31/342 (9%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
+EDV NF SDC I +G G+HF+ R+G++ G+A +E+ SE DV+ AL+K R MG RY+
Sbjct: 24 VEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 83
Query: 61 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITF 118
EV++ + ++D ++K S+ NDG VRLRGLP+ C +++IV FF+GL IV IT
Sbjct: 84 EVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL 143
Query: 119 VMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT--------- 169
+D G + TGEA+VQF E+A +AL KH+E IG+RYIE+F S + EVR+
Sbjct: 144 PVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM 202
Query: 170 ----------------HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTA--FE 211
++G K + Y T +EE+ D T F
Sbjct: 203 SVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GYGGYEEYSGLSDGYGFTTDLFG 261
Query: 212 SEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEY 271
+ L + ++ +++ H VHMRGLP++A DI NFF+PL PVR+ +E
Sbjct: 262 RDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
Query: 272 SSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
G+ TGEADV F THE+AVAAM KDR+++ HRYIELFLNS
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 363
Score = 64.3 bits (155), Expect = 1e-10
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
VV+LRGLP+SC+ +D+ +F + I D + F+ G R++GEA+V+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG-RQSGEAFVELGSEDDVKMA 70
Query: 145 LLKHREEIGNRYIEIFPSRRNEV 167
L K RE +G+RYIE+F S R E+
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEM 93
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 296
V +RGLP+ + +D+ NF + + Y+ G+ +GEA V + +D A+
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 297 KDRSHVHHRYIELF 310
KDR + HRYIE+F
Sbjct: 73 KDRESMGHRYIEVF 86
>gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
Length = 415
Score = 245 bits (626), Expect = 3e-65
Identities = 142/342 (41%), Positives = 200/342 (58%), Gaps = 31/342 (9%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
+EDV NF SDC I +G G+HF+ R+G++ G+A +E+ SE DV+ AL+K R MG RY+
Sbjct: 24 VEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 83
Query: 61 EVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITF 118
EV++ + ++D ++K S+ NDG VRLRGLP+ C +++IV FF+GL IV IT
Sbjct: 84 EVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL 143
Query: 119 VMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRT--------- 169
+D G + TGEA+VQF E+A +AL KH+E IG+RYIE+F S + EVR+
Sbjct: 144 PVDPEG-KITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFM 202
Query: 170 ----------------HVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTA--FE 211
++G K + Y T +EE+ D T F
Sbjct: 203 SVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYST-GYGGYEEYSGLSDGYGFTTDLFG 261
Query: 212 SEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEY 271
+ L + ++ +++ H VHMRGLP++A DI NFF+PL PVR+ +E
Sbjct: 262 RDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEI 321
Query: 272 SSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
G+ TGEADV F THE+AVAAM KDR+++ HRYIELFLNS
Sbjct: 322 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 363
Score = 64.3 bits (155), Expect = 1e-10
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
VV+LRGLP+SC+ +D+ +F + I D + F+ G R++GEA+V+ + A
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG-RQSGEAFVELGSEDDVKMA 70
Query: 145 LLKHREEIGNRYIEIFPSRRNEV 167
L K RE +G+RYIE+F S R E+
Sbjct: 71 LKKDRESMGHRYIEVFKSHRTEM 93
Score = 49.3 bits (116), Expect = 5e-06
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 296
V +RGLP+ + +D+ NF + + Y+ G+ +GEA V + +D A+
Sbjct: 13 VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 72
Query: 297 KDRSHVHHRYIELF 310
KDR + HRYIE+F
Sbjct: 73 KDRESMGHRYIEVF 86
>gi|5031753 heterogeneous nuclear ribonucleoprotein H1 [Homo
sapiens]
Length = 449
Score = 179 bits (455), Expect = 2e-45
Identities = 90/171 (52%), Positives = 123/171 (71%), Gaps = 3/171 (1%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
++V FFSDC+I+NG GI F+ R+G+ G+A +E+ESE +V+ AL+K R MG RYVE
Sbjct: 25 DEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVE 84
Query: 62 VYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFV 119
V++ NN ++D ++K S NDG VRLRGLP+ C++++IV FF+GL IV IT
Sbjct: 85 VFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLP 144
Query: 120 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
+D++G R TGEA+VQF E+A +AL KH+E IG+RYIEIF S R EVRTH
Sbjct: 145 VDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTH 194
Score = 107 bits (266), Expect = 2e-23
Identities = 48/75 (64%), Positives = 59/75 (78%)
Query: 239 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 298
H VHMRGLP++A DI NFF+PL PVR+ +E G+ TGEADV F THEDAVAAM KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKD 348
Query: 299 RSHVHHRYIELFLNS 313
++++ HRY+ELFLNS
Sbjct: 349 KANMQHRYVELFLNS 363
Score = 92.8 bits (229), Expect = 4e-19
Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 61/231 (26%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
VV++RGLP+SC+ ++ FF+ I + I F+ GR +GEA+V+ E + A
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGR-PSGEAFVELESEDEVKLA 70
Query: 145 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 204
L K RE +G+RY+E+F S E + V + N
Sbjct: 71 LKKDRETMGHRYVEVFKSNN------------------------VEMDWVLKHTGPNS-- 104
Query: 205 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 263
P+ A+ G FV +RGLPF + ++I+ FF+ L+
Sbjct: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136
Query: 264 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
P IT+ G++TGEA V F + E A A+ K + + HRYIE+F +S
Sbjct: 137 VPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 52.4 bits (124), Expect = 5e-07
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 90 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 149
V +RGLPY E DI +FF+ LN V + + G R TGEA V+F E A A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEDAVAAMSKDK 349
Query: 150 EEIGNRYIEIF 160
+ +RY+E+F
Sbjct: 350 ANMQHRYVELF 360
Score = 37.0 bits (84), Expect = 0.023
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 3 DVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
D+ NFFS +R +H + DG+ G+A +E + +D A+ K + M RYVE
Sbjct: 304 DIYNFFSPLNPVR-----VHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVE 358
Query: 62 VY 63
++
Sbjct: 359 LF 360
>gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 179 bits (454), Expect = 3e-45
Identities = 88/171 (51%), Positives = 126/171 (73%), Gaps = 3/171 (1%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
++V+ FFSDC+I+NG +GI F+ R+G+ G+A +E+ESE++V+ AL+K R MG RYVE
Sbjct: 25 DEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVE 84
Query: 62 VYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFV 119
V++ N+ ++D ++K S NDG VRLRGLP+ C++++IV FF+GL IV +T
Sbjct: 85 VFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLP 144
Query: 120 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
+D++G R TGEA+VQF E+A +AL KH+E IG+RYIEIF S R EVRTH
Sbjct: 145 VDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTH 194
Score = 106 bits (264), Expect = 3e-23
Identities = 47/75 (62%), Positives = 59/75 (78%)
Query: 239 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 298
H VHMRGLP++A DI NFF+PL P+R+ +E G+ TGEADV F THEDAVAAM KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 299 RSHVHHRYIELFLNS 313
++++ HRY+ELFLNS
Sbjct: 349 KANMQHRYVELFLNS 363
Score = 93.6 bits (231), Expect = 2e-19
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 61/231 (26%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
VV++RGLP+SC+ +++ FF+ I + I F+ GR +GEA+V+ E E A
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGR-PSGEAFVELESEEEVKLA 70
Query: 145 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 204
L K RE +G+RY+E+F S E + V + N
Sbjct: 71 LKKDRETMGHRYVEVFKSNS------------------------VEMDWVLKHTGPNS-- 104
Query: 205 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 263
P+ A+ G FV +RGLPF + ++I+ FF+ L+
Sbjct: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136
Query: 264 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
P +T+ G++TGEA V F + E A A+ K + + HRYIE+F +S
Sbjct: 137 VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 9e-07
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 90 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 149
V +RGLPY E DI +FF+ LN + + + G R TGEA V+F E A A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG-RVTGEADVEFATHEDAVAAMAKDK 349
Query: 150 EEIGNRYIEIF 160
+ +RY+E+F
Sbjct: 350 ANMQHRYVELF 360
Score = 37.0 bits (84), Expect = 0.023
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 62
D+ NFFS +H + DG+ G+A +E + +D A+ K + M RYVE+
Sbjct: 304 DIYNFFSPLNPMR----VHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 359
Query: 63 Y 63
+
Sbjct: 360 F 360
>gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 179 bits (454), Expect = 3e-45
Identities = 88/171 (51%), Positives = 126/171 (73%), Gaps = 3/171 (1%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
++V+ FFSDC+I+NG +GI F+ R+G+ G+A +E+ESE++V+ AL+K R MG RYVE
Sbjct: 25 DEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVE 84
Query: 62 VYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFV 119
V++ N+ ++D ++K S NDG VRLRGLP+ C++++IV FF+GL IV +T
Sbjct: 85 VFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLP 144
Query: 120 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
+D++G R TGEA+VQF E+A +AL KH+E IG+RYIEIF S R EVRTH
Sbjct: 145 VDFQG-RSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTH 194
Score = 106 bits (264), Expect = 3e-23
Identities = 47/75 (62%), Positives = 59/75 (78%)
Query: 239 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 298
H VHMRGLP++A DI NFF+PL P+R+ +E G+ TGEADV F THEDAVAAM KD
Sbjct: 289 HCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKD 348
Query: 299 RSHVHHRYIELFLNS 313
++++ HRY+ELFLNS
Sbjct: 349 KANMQHRYVELFLNS 363
Score = 93.6 bits (231), Expect = 2e-19
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 61/231 (26%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD----ITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
VV++RGLP+SC+ +++ FF+ I + I F+ GR +GEA+V+ E E A
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGR-PSGEAFVELESEEEVKLA 70
Query: 145 LLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDI 204
L K RE +G+RY+E+F S E + V + N
Sbjct: 71 LKKDRETMGHRYVEVFKSNS------------------------VEMDWVLKHTGPNS-- 104
Query: 205 QPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLK- 263
P+ A+ G FV +RGLPF + ++I+ FF+ L+
Sbjct: 105 ----------------------PDTANDG------FVRLRGLPFGCSKEEIVQFFSGLEI 136
Query: 264 -PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
P +T+ G++TGEA V F + E A A+ K + + HRYIE+F +S
Sbjct: 137 VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187
Score = 51.6 bits (122), Expect = 9e-07
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 90 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 149
V +RGLPY E DI +FF+ LN + + + G R TGEA V+F E A A+ K +
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG-RVTGEADVEFATHEDAVAAMAKDK 349
Query: 150 EEIGNRYIEIF 160
+ +RY+E+F
Sbjct: 350 ANMQHRYVELF 360
Score = 37.0 bits (84), Expect = 0.023
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 62
D+ NFFS +H + DG+ G+A +E + +D A+ K + M RYVE+
Sbjct: 304 DIYNFFSPLNPMR----VHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 359
Query: 63 Y 63
+
Sbjct: 360 F 360
>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
Length = 604
Score = 116 bits (290), Expect = 3e-26
Identities = 92/326 (28%), Positives = 150/326 (46%), Gaps = 60/326 (18%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
+D+ FF I G G LN G+R G+AL+ SE+ AL++H+ +MG RY+E
Sbjct: 239 QDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE 296
Query: 62 VYEINNEDVDALMKSLQVKSSPVV------NDGVVRLRGLPYSCNEKDIVDFFAGLNIV- 114
VY+ ED +K S+ V N +VR+RGLP++ +++V FF +
Sbjct: 297 VYKATGED---FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPIT 353
Query: 115 ----DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
I FV Y R TG+A+V F E A AL KH++ +G RYIE+F S EV+
Sbjct: 354 GGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Query: 171 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKE-VPEKLPEA 229
+ + + PT I LP++ VP
Sbjct: 413 LNRFSSAPLIPLPTPPIIP---------------------------VLPQQFVP------ 439
Query: 230 ADFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITMEYSSSGKATGEADVHF 285
T+ + +RGLP+ A +DI++F ++ + M + G+ +G+A +
Sbjct: 440 ----PTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 286 ETHEDA-VAAMLKDRSHVHHRYIELF 310
++ + A +AA + ++ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
Score = 84.3 bits (207), Expect = 1e-16
Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 25/190 (13%)
Query: 2 EDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q AL KH+ +G+RY+
Sbjct: 340 EEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYI 399
Query: 61 EVYEINNEDVDALMKS------LQVKSSPVVN------------DGVVRLRGLPYSCNEK 102
E++ +V ++ + + + P++ +RLRGLPY+ +
Sbjct: 400 ELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIE 459
Query: 103 DIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEIGNRYI 157
DI+DF + + V++++GR +G+A++Q + + A A K H++ + +RY+
Sbjct: 460 DILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAAQKCHKKNMKDRYV 518
Query: 158 EIFPSRRNEV 167
E+F E+
Sbjct: 519 EVFQCSAEEM 528
Score = 80.5 bits (197), Expect = 2e-15
Identities = 68/238 (28%), Positives = 99/238 (41%), Gaps = 59/238 (24%)
Query: 80 KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 137
K + ++ VVR RGLP+ +++DI FF GLNI ++ +GRR GEA V+F
Sbjct: 217 KMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRR-NGEALVRFVS 275
Query: 138 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 197
E + AL +H+ +G RYIE++ +
Sbjct: 276 EEHRDLALQRHKHHMGTRYIEVYKA----------------------------------- 300
Query: 198 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 257
ED + S E A F + + V MRGLPF A A++++
Sbjct: 301 --TGEDFLKIAGGTSN--------------EVAQFLSKENQVIVRMRGLPFTATAEEVVA 344
Query: 258 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
FF P+ I G+ TG+A V F E A A+ K + + RYIELF
Sbjct: 345 FFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 402
Score = 51.2 bits (121), Expect = 1e-06
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRY 59
+ED+L+F + +G+H +LN G+ GDA I+M+S A +K H+ M RY
Sbjct: 458 IEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRY 517
Query: 60 VEVYEINNEDVDALM 74
VEV++ + E+++ ++
Sbjct: 518 VEVFQCSAEEMNFVL 532
Score = 47.4 bits (111), Expect = 2e-05
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 223 PEKLPEAADFGTTSSLHF------VHMRGLPFQANAQDIINFFAPLKPVR--ITMEYSSS 274
PE++ + GT S + V RGLP+Q++ QDI FF L + + ++
Sbjct: 203 PERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ 262
Query: 275 GKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
G+ GEA V F + E A+ + + H+ RYIE++
Sbjct: 263 GRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVY 298
>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
Length = 659
Score = 116 bits (290), Expect = 3e-26
Identities = 92/326 (28%), Positives = 150/326 (46%), Gaps = 60/326 (18%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
+D+ FF I G G LN G+R G+AL+ SE+ AL++H+ +MG RY+E
Sbjct: 239 QDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE 296
Query: 62 VYEINNEDVDALMKSLQVKSSPVV------NDGVVRLRGLPYSCNEKDIVDFFAGLNIV- 114
VY+ ED +K S+ V N +VR+RGLP++ +++V FF +
Sbjct: 297 VYKATGED---FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPIT 353
Query: 115 ----DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
I FV Y R TG+A+V F E A AL KH++ +G RYIE+F S EV+
Sbjct: 354 GGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Query: 171 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKE-VPEKLPEA 229
+ + + PT I LP++ VP
Sbjct: 413 LNRFSSAPLIPLPTPPIIP---------------------------VLPQQFVP------ 439
Query: 230 ADFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITMEYSSSGKATGEADVHF 285
T+ + +RGLP+ A +DI++F ++ + M + G+ +G+A +
Sbjct: 440 ----PTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 286 ETHEDA-VAAMLKDRSHVHHRYIELF 310
++ + A +AA + ++ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
Score = 85.9 bits (211), Expect = 4e-17
Identities = 77/315 (24%), Positives = 134/315 (42%), Gaps = 62/315 (19%)
Query: 2 EDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q AL KH+ +G+RY+
Sbjct: 340 EEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYI 399
Query: 61 EVYEINNEDVDALMKS------LQVKSSPVVN------------DGVVRLRGLPYSCNEK 102
E++ +V ++ + + + P++ +RLRGLPY+ +
Sbjct: 400 ELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIE 459
Query: 103 DIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEIGNRYI 157
DI+DF + + V++++GR +G+A++Q + + A A K H++ + +RY+
Sbjct: 460 DILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAAQKCHKKNMKDRYV 518
Query: 158 EIFPSRRNEVR-THVGSYKGKK------------------IASFPTAKYITEPEMVFEEH 198
E+F E+ +G + A PT I +P ++
Sbjct: 519 EVFQCSAEEMNFVLMGGTLNRNGLSPPPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPR 578
Query: 199 EVNEDIQPMTAF---------ESEKEIELPKEVPEKL---PEAADFGTTSSL--HFVHMR 244
+QP TA+ P P L P AA+ V M+
Sbjct: 579 A----LQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQ 634
Query: 245 GLPFQANAQDIINFF 259
GL + ++I+NFF
Sbjct: 635 GLAYNTGVKEILNFF 649
Score = 80.5 bits (197), Expect = 2e-15
Identities = 68/238 (28%), Positives = 99/238 (41%), Gaps = 59/238 (24%)
Query: 80 KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 137
K + ++ VVR RGLP+ +++DI FF GLNI ++ +GRR GEA V+F
Sbjct: 217 KMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRR-NGEALVRFVS 275
Query: 138 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 197
E + AL +H+ +G RYIE++ +
Sbjct: 276 EEHRDLALQRHKHHMGTRYIEVYKA----------------------------------- 300
Query: 198 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 257
ED + S E A F + + V MRGLPF A A++++
Sbjct: 301 --TGEDFLKIAGGTSN--------------EVAQFLSKENQVIVRMRGLPFTATAEEVVA 344
Query: 258 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
FF P+ I G+ TG+A V F E A A+ K + + RYIELF
Sbjct: 345 FFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 402
Score = 51.2 bits (121), Expect = 1e-06
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRY 59
+ED+L+F + +G+H +LN G+ GDA I+M+S A +K H+ M RY
Sbjct: 458 IEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRY 517
Query: 60 VEVYEINNEDVDALM 74
VEV++ + E+++ ++
Sbjct: 518 VEVFQCSAEEMNFVL 532
Score = 47.4 bits (111), Expect = 2e-05
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 223 PEKLPEAADFGTTSSLHF------VHMRGLPFQANAQDIINFFAPLKPVR--ITMEYSSS 274
PE++ + GT S + V RGLP+Q++ QDI FF L + + ++
Sbjct: 203 PERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ 262
Query: 275 GKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
G+ GEA V F + E A+ + + H+ RYIE++
Sbjct: 263 GRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVY 298
>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
Length = 608
Score = 116 bits (290), Expect = 3e-26
Identities = 92/326 (28%), Positives = 150/326 (46%), Gaps = 60/326 (18%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
+D+ FF I G G LN G+R G+AL+ SE+ AL++H+ +MG RY+E
Sbjct: 239 QDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE 296
Query: 62 VYEINNEDVDALMKSLQVKSSPVV------NDGVVRLRGLPYSCNEKDIVDFFAGLNIV- 114
VY+ ED +K S+ V N +VR+RGLP++ +++V FF +
Sbjct: 297 VYKATGED---FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPIT 353
Query: 115 ----DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
I FV Y R TG+A+V F E A AL KH++ +G RYIE+F S EV+
Sbjct: 354 GGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Query: 171 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKE-VPEKLPEA 229
+ + + PT I LP++ VP
Sbjct: 413 LNRFSSAPLIPLPTPPIIP---------------------------VLPQQFVP------ 439
Query: 230 ADFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITMEYSSSGKATGEADVHF 285
T+ + +RGLP+ A +DI++F ++ + M + G+ +G+A +
Sbjct: 440 ----PTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 286 ETHEDA-VAAMLKDRSHVHHRYIELF 310
++ + A +AA + ++ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
Score = 84.3 bits (207), Expect = 1e-16
Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 25/190 (13%)
Query: 2 EDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q AL KH+ +G+RY+
Sbjct: 340 EEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYI 399
Query: 61 EVYEINNEDVDALMKS------LQVKSSPVVN------------DGVVRLRGLPYSCNEK 102
E++ +V ++ + + + P++ +RLRGLPY+ +
Sbjct: 400 ELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIE 459
Query: 103 DIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEIGNRYI 157
DI+DF + + V++++GR +G+A++Q + + A A K H++ + +RY+
Sbjct: 460 DILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAAQKCHKKNMKDRYV 518
Query: 158 EIFPSRRNEV 167
E+F E+
Sbjct: 519 EVFQCSAEEM 528
Score = 80.5 bits (197), Expect = 2e-15
Identities = 68/238 (28%), Positives = 99/238 (41%), Gaps = 59/238 (24%)
Query: 80 KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 137
K + ++ VVR RGLP+ +++DI FF GLNI ++ +GRR GEA V+F
Sbjct: 217 KMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRR-NGEALVRFVS 275
Query: 138 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 197
E + AL +H+ +G RYIE++ +
Sbjct: 276 EEHRDLALQRHKHHMGTRYIEVYKA----------------------------------- 300
Query: 198 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 257
ED + S E A F + + V MRGLPF A A++++
Sbjct: 301 --TGEDFLKIAGGTSN--------------EVAQFLSKENQVIVRMRGLPFTATAEEVVA 344
Query: 258 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
FF P+ I G+ TG+A V F E A A+ K + + RYIELF
Sbjct: 345 FFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 402
Score = 51.2 bits (121), Expect = 1e-06
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRY 59
+ED+L+F + +G+H +LN G+ GDA I+M+S A +K H+ M RY
Sbjct: 458 IEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRY 517
Query: 60 VEVYEINNEDVDALM 74
VEV++ + E+++ ++
Sbjct: 518 VEVFQCSAEEMNFVL 532
Score = 47.4 bits (111), Expect = 2e-05
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 223 PEKLPEAADFGTTSSLHF------VHMRGLPFQANAQDIINFFAPLKPVR--ITMEYSSS 274
PE++ + GT S + V RGLP+Q++ QDI FF L + + ++
Sbjct: 203 PERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ 262
Query: 275 GKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
G+ GEA V F + E A+ + + H+ RYIE++
Sbjct: 263 GRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVY 298
>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
Length = 677
Score = 116 bits (290), Expect = 3e-26
Identities = 92/326 (28%), Positives = 150/326 (46%), Gaps = 60/326 (18%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
+D+ FF I G G LN G+R G+AL+ SE+ AL++H+ +MG RY+E
Sbjct: 239 QDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE 296
Query: 62 VYEINNEDVDALMKSLQVKSSPVV------NDGVVRLRGLPYSCNEKDIVDFFAGLNIV- 114
VY+ ED +K S+ V N +VR+RGLP++ +++V FF +
Sbjct: 297 VYKATGED---FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPIT 353
Query: 115 ----DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
I FV Y R TG+A+V F E A AL KH++ +G RYIE+F S EV+
Sbjct: 354 GGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Query: 171 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKE-VPEKLPEA 229
+ + + PT I LP++ VP
Sbjct: 413 LNRFSSAPLIPLPTPPIIP---------------------------VLPQQFVP------ 439
Query: 230 ADFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITMEYSSSGKATGEADVHF 285
T+ + +RGLP+ A +DI++F ++ + M + G+ +G+A +
Sbjct: 440 ----PTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 286 ETHEDA-VAAMLKDRSHVHHRYIELF 310
++ + A +AA + ++ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
Score = 85.9 bits (211), Expect = 4e-17
Identities = 77/315 (24%), Positives = 134/315 (42%), Gaps = 62/315 (19%)
Query: 2 EDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q AL KH+ +G+RY+
Sbjct: 340 EEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYI 399
Query: 61 EVYEINNEDVDALMKS------LQVKSSPVVN------------DGVVRLRGLPYSCNEK 102
E++ +V ++ + + + P++ +RLRGLPY+ +
Sbjct: 400 ELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIE 459
Query: 103 DIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEIGNRYI 157
DI+DF + + V++++GR +G+A++Q + + A A K H++ + +RY+
Sbjct: 460 DILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAAQKCHKKNMKDRYV 518
Query: 158 EIFPSRRNEVR-THVGSYKGKK------------------IASFPTAKYITEPEMVFEEH 198
E+F E+ +G + A PT I +P ++
Sbjct: 519 EVFQCSAEEMNFVLMGGTLNRNGLSPPPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPR 578
Query: 199 EVNEDIQPMTAF---------ESEKEIELPKEVPEKL---PEAADFGTTSSL--HFVHMR 244
+QP TA+ P P L P AA+ V M+
Sbjct: 579 A----LQPSTAYYPAGTQLFMNYTAYYPSPPGSPNSLGYFPTAANLSGVPPQPGTVVRMQ 634
Query: 245 GLPFQANAQDIINFF 259
GL + ++I+NFF
Sbjct: 635 GLAYNTGVKEILNFF 649
Score = 80.5 bits (197), Expect = 2e-15
Identities = 68/238 (28%), Positives = 99/238 (41%), Gaps = 59/238 (24%)
Query: 80 KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 137
K + ++ VVR RGLP+ +++DI FF GLNI ++ +GRR GEA V+F
Sbjct: 217 KMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRR-NGEALVRFVS 275
Query: 138 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 197
E + AL +H+ +G RYIE++ +
Sbjct: 276 EEHRDLALQRHKHHMGTRYIEVYKA----------------------------------- 300
Query: 198 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 257
ED + S E A F + + V MRGLPF A A++++
Sbjct: 301 --TGEDFLKIAGGTSN--------------EVAQFLSKENQVIVRMRGLPFTATAEEVVA 344
Query: 258 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
FF P+ I G+ TG+A V F E A A+ K + + RYIELF
Sbjct: 345 FFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 402
Score = 51.2 bits (121), Expect = 1e-06
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRY 59
+ED+L+F + +G+H +LN G+ GDA I+M+S A +K H+ M RY
Sbjct: 458 IEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRY 517
Query: 60 VEVYEINNEDVDALM 74
VEV++ + E+++ ++
Sbjct: 518 VEVFQCSAEEMNFVL 532
Score = 47.4 bits (111), Expect = 2e-05
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 223 PEKLPEAADFGTTSSLHF------VHMRGLPFQANAQDIINFFAPLKPVR--ITMEYSSS 274
PE++ + GT S + V RGLP+Q++ QDI FF L + + ++
Sbjct: 203 PERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ 262
Query: 275 GKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
G+ GEA V F + E A+ + + H+ RYIE++
Sbjct: 263 GRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVY 298
>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
Length = 681
Score = 116 bits (290), Expect = 3e-26
Identities = 92/326 (28%), Positives = 150/326 (46%), Gaps = 60/326 (18%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
+D+ FF I G G LN G+R G+AL+ SE+ AL++H+ +MG RY+E
Sbjct: 239 QDIARFFKGLNIAKG--GAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIE 296
Query: 62 VYEINNEDVDALMKSLQVKSSPVV------NDGVVRLRGLPYSCNEKDIVDFFAGLNIV- 114
VY+ ED +K S+ V N +VR+RGLP++ +++V FF +
Sbjct: 297 VYKATGED---FLKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPIT 353
Query: 115 ----DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTH 170
I FV Y R TG+A+V F E A AL KH++ +G RYIE+F S EV+
Sbjct: 354 GGKEGILFV-TYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQV 412
Query: 171 VGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKE-VPEKLPEA 229
+ + + PT I LP++ VP
Sbjct: 413 LNRFSSAPLIPLPTPPIIP---------------------------VLPQQFVP------ 439
Query: 230 ADFGTTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITMEYSSSGKATGEADVHF 285
T+ + +RGLP+ A +DI++F ++ + M + G+ +G+A +
Sbjct: 440 ----PTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 286 ETHEDA-VAAMLKDRSHVHHRYIELF 310
++ + A +AA + ++ RY+E+F
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVF 521
Score = 84.3 bits (207), Expect = 1e-16
Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 25/190 (13%)
Query: 2 EDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 60
E+V+ FF C I G+ GI F+ DG+ GDA + E+ Q AL KH+ +G+RY+
Sbjct: 340 EEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYI 399
Query: 61 EVYEINNEDVDALMKS------LQVKSSPVVN------------DGVVRLRGLPYSCNEK 102
E++ +V ++ + + + P++ +RLRGLPY+ +
Sbjct: 400 ELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIE 459
Query: 103 DIVDFFA----GLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEIGNRYI 157
DI+DF + + V++++GR +G+A++Q + + A A K H++ + +RY+
Sbjct: 460 DILDFLGEFATDIRTHGVHMVLNHQGR-PSGDAFIQMKSADRAFMAAQKCHKKNMKDRYV 518
Query: 158 EIFPSRRNEV 167
E+F E+
Sbjct: 519 EVFQCSAEEM 528
Score = 80.5 bits (197), Expect = 2e-15
Identities = 68/238 (28%), Positives = 99/238 (41%), Gaps = 59/238 (24%)
Query: 80 KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 137
K + ++ VVR RGLP+ +++DI FF GLNI ++ +GRR GEA V+F
Sbjct: 217 KMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRR-NGEALVRFVS 275
Query: 138 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 197
E + AL +H+ +G RYIE++ +
Sbjct: 276 EEHRDLALQRHKHHMGTRYIEVYKA----------------------------------- 300
Query: 198 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 257
ED + S E A F + + V MRGLPF A A++++
Sbjct: 301 --TGEDFLKIAGGTSN--------------EVAQFLSKENQVIVRMRGLPFTATAEEVVA 344
Query: 258 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
FF P+ I G+ TG+A V F E A A+ K + + RYIELF
Sbjct: 345 FFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 402
Score = 51.2 bits (121), Expect = 1e-06
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRY 59
+ED+L+F + +G+H +LN G+ GDA I+M+S A +K H+ M RY
Sbjct: 458 IEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRY 517
Query: 60 VEVYEINNEDVDALM 74
VEV++ + E+++ ++
Sbjct: 518 VEVFQCSAEEMNFVL 532
Score = 47.4 bits (111), Expect = 2e-05
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 223 PEKLPEAADFGTTSSLHF------VHMRGLPFQANAQDIINFFAPLKPVR--ITMEYSSS 274
PE++ + GT S + V RGLP+Q++ QDI FF L + + ++
Sbjct: 203 PERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQ 262
Query: 275 GKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
G+ GEA V F + E A+ + + H+ RYIE++
Sbjct: 263 GRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVY 298
>gi|14141157 heterogeneous nuclear ribonucleoprotein H3 isoform a
[Homo sapiens]
Length = 346
Score = 115 bits (289), Expect = 4e-26
Identities = 52/79 (65%), Positives = 64/79 (81%)
Query: 239 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 298
HFVHMRGLPF+A DI NFF+PL P+R+ ++ + G+ATGEADV F THEDAVAAM KD
Sbjct: 195 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 254
Query: 299 RSHVHHRYIELFLNSCPKG 317
++++ HRYIELFLNS P G
Sbjct: 255 KNNMQHRYIELFLNSTPGG 273
Score = 98.6 bits (244), Expect = 6e-21
Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
Query: 86 NDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQ 143
+DG VRLRGLP+ C++++IV FF GL IV IT MDY+GR TGEA+VQF E+A
Sbjct: 14 SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGR-STGEAFVQFASKEIAEN 72
Query: 144 ALLKHREEIGNRYIEIFPSRRNEVR 168
AL KH+E IG+RYIEIF S R+E++
Sbjct: 73 ALGKHKERIGHRYIEIFRSSRSEIK 97
Score = 58.2 bits (139), Expect = 1e-08
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 298
V +RGLPF + ++I+ FF L+ P IT+ G++TGEA V F + E A A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 299 RSHVHHRYIELFLNS 313
+ + HRYIE+F +S
Sbjct: 78 KERIGHRYIEIFRSS 92
Score = 51.6 bits (122), Expect = 9e-07
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 90 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 149
V +RGLP+ E DI +FF+ LN + + + G R TGEA V+F E A A+ K +
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADG-RATGEADVEFVTHEDAVAAMSKDK 255
Query: 150 EEIGNRYIEIF 160
+ +RYIE+F
Sbjct: 256 NNMQHRYIELF 266
Score = 44.7 bits (104), Expect = 1e-04
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
E+++ FF I NGI ++ G+ G+A ++ S++ + AL KH+ +G RY+E
Sbjct: 30 EEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIE 87
Query: 62 VYEINNEDV 70
++ + ++
Sbjct: 88 IFRSSRSEI 96
Score = 37.0 bits (84), Expect = 0.023
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 3 DVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
D+ NFFS IR +H + DG+ G+A +E + +D A+ K + M RY+E
Sbjct: 210 DIANFFSPLNPIR-----VHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIE 264
Query: 62 VY 63
++
Sbjct: 265 LF 266
>gi|14141159 heterogeneous nuclear ribonucleoprotein H3 isoform b
[Homo sapiens]
Length = 331
Score = 115 bits (289), Expect = 4e-26
Identities = 52/79 (65%), Positives = 64/79 (81%)
Query: 239 HFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 298
HFVHMRGLPF+A DI NFF+PL P+R+ ++ + G+ATGEADV F THEDAVAAM KD
Sbjct: 180 HFVHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 239
Query: 299 RSHVHHRYIELFLNSCPKG 317
++++ HRYIELFLNS P G
Sbjct: 240 KNNMQHRYIELFLNSTPGG 258
Score = 98.6 bits (244), Expect = 6e-21
Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
Query: 86 NDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQ 143
+DG VRLRGLP+ C++++IV FF GL IV IT MDY+GR TGEA+VQF E+A
Sbjct: 14 SDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGR-STGEAFVQFASKEIAEN 72
Query: 144 ALLKHREEIGNRYIEIFPSRRNEVR 168
AL KH+E IG+RYIEIF S R+E++
Sbjct: 73 ALGKHKERIGHRYIEIFRSSRSEIK 97
Score = 58.2 bits (139), Expect = 1e-08
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAMLKD 298
V +RGLPF + ++I+ FF L+ P IT+ G++TGEA V F + E A A+ K
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 299 RSHVHHRYIELFLNS 313
+ + HRYIE+F +S
Sbjct: 78 KERIGHRYIEIFRSS 92
Score = 51.6 bits (122), Expect = 9e-07
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 90 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 149
V +RGLP+ E DI +FF+ LN + + + G R TGEA V+F E A A+ K +
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADG-RATGEADVEFVTHEDAVAAMSKDK 240
Query: 150 EEIGNRYIEIF 160
+ +RYIE+F
Sbjct: 241 NNMQHRYIELF 251
Score = 44.7 bits (104), Expect = 1e-04
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
E+++ FF I NGI ++ G+ G+A ++ S++ + AL KH+ +G RY+E
Sbjct: 30 EEIVQFFQGLEIV--PNGITLTMDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIE 87
Query: 62 VYEINNEDV 70
++ + ++
Sbjct: 88 IFRSSRSEI 96
Score = 37.0 bits (84), Expect = 0.023
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 3 DVLNFFSDCR-IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
D+ NFFS IR +H + DG+ G+A +E + +D A+ K + M RY+E
Sbjct: 195 DIANFFSPLNPIR-----VHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIE 249
Query: 62 VY 63
++
Sbjct: 250 LF 251
>gi|45935393 RNA binding motif protein 35B [Homo sapiens]
Length = 717
Score = 112 bits (281), Expect = 3e-25
Identities = 95/321 (29%), Positives = 144/321 (44%), Gaps = 54/321 (16%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
+DV FF + G G+ LN G+R G+ALI + AL++H+ +MG RY+E
Sbjct: 261 QDVARFFKGLNVARG--GVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIE 318
Query: 62 VYEINNEDVDALM--KSLQVKSSPVVNDGVV-RLRGLPYSCNEKDIVDFFAGLNIVD--- 115
VY+ E+ + SL+V D V+ RLRGLP+S D++ F V
Sbjct: 319 VYKATGEEFVKIAGGTSLEVARFLSREDQVILRLRGLPFSAGPTDVLGFLGPECPVTGGT 378
Query: 116 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGS 173
+ FV GR TG+A+ F E+A AL +H+ +G RYIE+F S EV+ +
Sbjct: 379 EGLLFVRHPDGR-PTGDAFALFACEELAQAALRRHKGMLGKRYIELFRSTAAEVQQVLNR 437
Query: 174 YKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFG 233
Y AS P +T P + P P A G
Sbjct: 438 Y-----ASGPLLPTLTAPLL-----------------------------PIPFPLAPGTG 463
Query: 234 TTSSLHFVHMRGLPFQANAQDIINFF----APLKPVRITMEYSSSGKATGEADVHFETHE 289
V +RGLP+ A +DI++F A ++P + M + G+ +G+A + + E
Sbjct: 464 RDC----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAE 519
Query: 290 DAVAAMLKDRSHV-HHRYIEL 309
A+AA + V RY+E+
Sbjct: 520 RALAAAQRCHKKVMKERYVEV 540
Score = 82.0 bits (201), Expect = 6e-16
Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 59/238 (24%)
Query: 80 KSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIV--DITFVMDYRGRRKTGEAYVQFEE 137
K+ V ++ VVR RGLP+ +++D+ FF GLN+ + ++ +GRR GEA ++F +
Sbjct: 239 KADVVDSETVVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRR-NGEALIRFVD 297
Query: 138 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 197
E + AL +H+ +G RYIE++ + E G S A++++ + V
Sbjct: 298 SEQRDLALQRHKHHMGVRYIEVYKATGEEFVKIAGG------TSLEVARFLSREDQV--- 348
Query: 198 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 257
+ +RGLPF A D++
Sbjct: 349 ------------------------------------------ILRLRGLPFSAGPTDVLG 366
Query: 258 FFAPLKPVR-----ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
F P PV + G+ TG+A F E A AA+ + + + RYIELF
Sbjct: 367 FLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIELF 424
Score = 79.3 bits (194), Expect = 4e-15
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 24/207 (11%)
Query: 3 DVLNFFS-DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
DVL F +C + G G+ F+ + DG+ GDA E+ Q AL +H+ +G+RY+E
Sbjct: 363 DVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRRHKGMLGKRYIE 422
Query: 62 VYEINNEDVDALMKS----------------LQVKSSPVVNDGVVRLRGLPYSCNEKDIV 105
++ +V ++ + +P VRLRGLPY+ +DI+
Sbjct: 423 LFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDCVRLRGLPYTATIEDIL 482
Query: 106 DFF----AGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLK-HREEIGNRYIEIF 160
F A + + V++ +G R +G+A++Q E A A + H++ + RY+E+
Sbjct: 483 SFLGEAAADIRPHGVHMVLNQQG-RPSGDAFIQMTSAERALAAAQRCHKKVMKERYVEVV 541
Query: 161 PSRRNEV-RTHVGSYKGKKIASFPTAK 186
P E+ R +G G+ S P K
Sbjct: 542 PCSTEEMSRVLMGGTLGRSGMSPPPCK 568
Score = 50.8 bits (120), Expect = 2e-06
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 1 MEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK-HRMYMGQRY 59
+ED+L+F + +G+H +LN+ G+ GDA I+M S + A ++ H+ M +RY
Sbjct: 478 IEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCHKKVMKERY 537
Query: 60 VEVYEINNEDVDALM 74
VEV + E++ ++
Sbjct: 538 VEVVPCSTEEMSRVL 552
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 84.3 bits (207), Expect = 1e-16
Identities = 75/322 (23%), Positives = 130/322 (40%), Gaps = 75/322 (23%)
Query: 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 62
DV +FF R+ + +H L + G+ G+ L++ S QD +AL+++RM M QRYVEV
Sbjct: 319 DVRDFFHGLRV----DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 374
Query: 63 YEINNEDVDALMKSLQVKS------------------------------SPVVNDGVVRL 92
A + K SP V L
Sbjct: 375 SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYL 434
Query: 93 RGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREE 151
+GLP+ K ++DFF L+IV+ + + Y K TGE +V+F AL +H++
Sbjct: 435 KGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQY 494
Query: 152 IGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFE 211
+GNR+I++ P + + + + K++ +F Y ++ E +VN
Sbjct: 495 MGNRFIQVHPITKKGMLEKIDMIR-KRLQNF---SYDQREMILNPEGDVN---------- 540
Query: 212 SEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF--APLKPVRITM 269
S+ H+ +PF D++ F P+ + +
Sbjct: 541 ------------------------SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHV 576
Query: 270 EYSSSGKATGEADVHFETHEDA 291
++G+ G+A V F+ +DA
Sbjct: 577 LVDNNGQGLGQALVQFKNEDDA 598
Score = 82.8 bits (203), Expect = 4e-16
Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 28/234 (11%)
Query: 79 VKSSPVVNDGV-VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEE 137
VK P+ D + V + G+P+S E D+ DFF GL + + + D+ G R G V+F
Sbjct: 294 VKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVG-RNNGNGLVKFLS 352
Query: 138 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 197
P+ +AL ++R + RY+E+ P+ + G + K P+ + T P
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQ-WVAAGGHITFKQNMGPSGQ--THP------ 403
Query: 198 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 257
P K K + P A F V+++GLPF+A + +I+
Sbjct: 404 --------PPQTLPRSKSPSGQKRSRSRSPHEAGF-------CVYLKGLPFEAENKHVID 448
Query: 258 FFAPLKPVR--ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIEL 309
FF L V I + Y +GKATGE V F D AA+ + + ++ +R+I++
Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502
Score = 65.1 bits (157), Expect = 8e-11
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 4 VLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 63
V++FF I E+ I+ +GK G+ +E +E D + AL +H+ YMG R+++V+
Sbjct: 446 VIDFFKKLDIV--EDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 503
Query: 64 EINN----EDVDALMKSLQ----------VKSSPVVNDGVV--RLRGLPYSCNEKDIVDF 107
I E +D + K LQ + VN V + +P+S + D++ F
Sbjct: 504 PITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCAHITNIPFSITKMDVLQF 563
Query: 108 FAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNR 155
G+ + + + ++D G + G+A VQF+ + A ++ HR+++ R
Sbjct: 564 LEGIPVDENAVHVLVDNNG-QGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 42.7 bits (99), Expect = 4e-04
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 62
DVL F + EN +H L++ +G+ G AL++ ++E D +K+ HR + R V
Sbjct: 559 DVLQFLEGIPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 616
Query: 63 YEINNEDVDALMKS 76
+ + ED+ + K+
Sbjct: 617 HVVTLEDMREIEKN 630
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAM--L 296
+ ++ +PF + +I++FF + P + ++Y+ G TGEA V FE+ ++A AA+ L
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
Query: 297 KDRSHVHHRYIELFL 311
DR + R ++L L
Sbjct: 918 NDRP-IGSRKVKLVL 931
Score = 38.9 bits (89), Expect = 0.006
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGR-RKTGEAYVQFEEPEMANQALLK 147
V++++ +P++ + +I+DFF G ++ + + Y + TGEA V FE + A A++
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 148 HREE-IGNRYIEI 159
+ IG+R +++
Sbjct: 917 LNDRPIGSRKVKL 929
Score = 33.9 bits (76), Expect = 0.20
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALL 146
V+RL+GLP DI FF+GL I D + V + GEA++ F E A ++
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV-----GGELGEAFIVFATDEDARLGMM 58
Query: 147 KHREEIGNRYIEIFPSRRNEVRTHV 171
+ I + + S + E++ +
Sbjct: 59 RTGGTIKGSKVTLLLSSKTEMQNMI 83
Score = 32.0 bits (71), Expect = 0.75
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 296
+ ++GLP A DI +FF+ L V I G GEA + F T EDA M+
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV------GGELGEAFIVFATDEDARLGMM 58
Query: 297 KDRSHVHHRYIELFLNS 313
+ + + L L+S
Sbjct: 59 RTGGTIKGSKVTLLLSS 75
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 84.3 bits (207), Expect = 1e-16
Identities = 75/322 (23%), Positives = 130/322 (40%), Gaps = 75/322 (23%)
Query: 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 62
DV +FF R+ + +H L + G+ G+ L++ S QD +AL+++RM M QRYVEV
Sbjct: 319 DVRDFFHGLRV----DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 374
Query: 63 YEINNEDVDALMKSLQVKS------------------------------SPVVNDGVVRL 92
A + K SP V L
Sbjct: 375 SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYL 434
Query: 93 RGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRK-TGEAYVQFEEPEMANQALLKHREE 151
+GLP+ K ++DFF L+IV+ + + Y K TGE +V+F AL +H++
Sbjct: 435 KGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQY 494
Query: 152 IGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFE 211
+GNR+I++ P + + + + K++ +F Y ++ E +VN
Sbjct: 495 MGNRFIQVHPITKKGMLEKIDMIR-KRLQNF---SYDQREMILNPEGDVN---------- 540
Query: 212 SEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF--APLKPVRITM 269
S+ H+ +PF D++ F P+ + +
Sbjct: 541 ------------------------SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHV 576
Query: 270 EYSSSGKATGEADVHFETHEDA 291
++G+ G+A V F+ +DA
Sbjct: 577 LVDNNGQGLGQALVQFKNEDDA 598
Score = 82.8 bits (203), Expect = 4e-16
Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 28/234 (11%)
Query: 79 VKSSPVVNDGV-VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEE 137
VK P+ D + V + G+P+S E D+ DFF GL + + + D+ G R G V+F
Sbjct: 294 VKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVG-RNNGNGLVKFLS 352
Query: 138 PEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEE 197
P+ +AL ++R + RY+E+ P+ + G + K P+ + T P
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQ-WVAAGGHITFKQNMGPSGQ--THP------ 403
Query: 198 HEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIIN 257
P K K + P A F V+++GLPF+A + +I+
Sbjct: 404 --------PPQTLPRSKSPSGQKRSRSRSPHEAGF-------CVYLKGLPFEAENKHVID 448
Query: 258 FFAPLKPVR--ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIEL 309
FF L V I + Y +GKATGE V F D AA+ + + ++ +R+I++
Sbjct: 449 FFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502
Score = 65.1 bits (157), Expect = 8e-11
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 4 VLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 63
V++FF I E+ I+ +GK G+ +E +E D + AL +H+ YMG R+++V+
Sbjct: 446 VIDFFKKLDIV--EDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 503
Query: 64 EINN----EDVDALMKSLQ----------VKSSPVVNDGVV--RLRGLPYSCNEKDIVDF 107
I E +D + K LQ + VN V + +P+S + D++ F
Sbjct: 504 PITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCAHITNIPFSITKMDVLQF 563
Query: 108 FAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNR 155
G+ + + + ++D G + G+A VQF+ + A ++ HR+++ R
Sbjct: 564 LEGIPVDENAVHVLVDNNG-QGLGQALVQFKNEDDARKSERLHRKKLNGR 612
Score = 42.7 bits (99), Expect = 4e-04
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 62
DVL F + EN +H L++ +G+ G AL++ ++E D +K+ HR + R V
Sbjct: 559 DVLQFLEGIPV--DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 616
Query: 63 YEINNEDVDALMKS 76
+ + ED+ + K+
Sbjct: 617 HVVTLEDMREIEKN 630
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAM--L 296
+ ++ +PF + +I++FF + P + ++Y+ G TGEA V FE+ ++A AA+ L
Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
Query: 297 KDRSHVHHRYIELFL 311
DR + R ++L L
Sbjct: 918 NDRP-IGSRKVKLVL 931
Score = 38.9 bits (89), Expect = 0.006
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGR-RKTGEAYVQFEEPEMANQALLK 147
V++++ +P++ + +I+DFF G ++ + + Y + TGEA V FE + A A++
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 148 HREE-IGNRYIEI 159
+ IG+R +++
Sbjct: 917 LNDRPIGSRKVKL 929
Score = 33.9 bits (76), Expect = 0.20
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALL 146
V+RL+GLP DI FF+GL I D + V + GEA++ F E A ++
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV-----GGELGEAFIVFATDEDARLGMM 58
Query: 147 KHREEIGNRYIEIFPSRRNEVRTHV 171
+ I + + S + E++ +
Sbjct: 59 RTGGTIKGSKVTLLLSSKTEMQNMI 83
Score = 32.0 bits (71), Expect = 0.75
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK----PVRITMEYSSSGKATGEADVHFETHEDAVAAML 296
+ ++GLP A DI +FF+ L V I G GEA + F T EDA M+
Sbjct: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV------GGELGEAFIVFATDEDARLGMM 58
Query: 297 KDRSHVHHRYIELFLNS 313
+ + + L L+S
Sbjct: 59 RTGGTIKGSKVTLLLSS 75
>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
Length = 1001
Score = 82.8 bits (203), Expect = 4e-16
Identities = 77/328 (23%), Positives = 130/328 (39%), Gaps = 74/328 (22%)
Query: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
+DV FFS + +G+ FL + DG+ GDA+++ S D L+ HR +MG R++E
Sbjct: 169 DDVRVFFSGLCV----DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIE 224
Query: 62 VYEINNE-----------DVDALMKSLQVKSSPVVNDG---------------------- 88
V + + + + D L +S + +ND
Sbjct: 225 VMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGF 284
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 148
V L+ L S +E+D+ +FF G ++ D Y+ +T A+V F+ + N AL H
Sbjct: 285 YVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLH 344
Query: 149 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 208
+ + R + I P R ++ + Y+ K+ S
Sbjct: 345 KTVLQYRPVHIDPISRKQMLKFIARYEKKRSGSL-------------------------- 378
Query: 209 AFESEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAP--LKPVR 266
E + P V +K + G + +++R PF ++ FFA L
Sbjct: 379 ------ERDRPGHVSQKYSQE---GNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLAEDD 429
Query: 267 ITMEYSSSGKATGEADVHFETHEDAVAA 294
I + Y G GEA V F++ E A+ A
Sbjct: 430 IYLLYDDKGVGLGEALVKFKSEEQAMKA 457
Score = 57.0 bits (136), Expect = 2e-08
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 25/220 (11%)
Query: 92 LRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREE 151
LRGLPY NE D+ FF+GL + + F+ + G R G+A V+F A+ L HR
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDG-RNNGDAIVKFASCVDASGGLKCHRSF 217
Query: 152 IGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFE 211
+G+R+IE+ + G K+ ++ + P + + H F
Sbjct: 218 MGSRFIEVMQGSEQQ-WIEFGGNAVKEGDVLRRSEEHSPPRGINDRH-----------FR 265
Query: 212 SEKEIELPKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFF--APLKPVRITM 269
+ P+ + P +VH++ L + +D+ NFF L +I
Sbjct: 266 KRSHSKSPRRTRSRSPLG---------FYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRF 316
Query: 270 EYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIEL 309
Y + T A V F+T +D A+ ++ + +R + +
Sbjct: 317 LYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHI 355
Score = 53.1 bits (126), Expect = 3e-07
Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 31/241 (12%)
Query: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 148
V+RL GLP+ DI FF GL I D V G + GEA++ F E A +A+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPD-GGVHIIGG--EIGEAFIIFATDEDARRAISRS 60
Query: 149 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 208
I + +E+F S + E++ + + ++ + + +
Sbjct: 61 GGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSL------------SN 108
Query: 209 AFESEKEIELPKEVPEKLPEAADFGTTSSLH----------------FVHMRGLPFQANA 252
ES KE + + A F T + H ++ +RGLP+ N
Sbjct: 109 FIESVKEEASNSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNE 168
Query: 253 QDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLN 312
D+ FF+ L + G+ G+A V F + DA + RS + R+IE+
Sbjct: 169 DDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQG 228
Query: 313 S 313
S
Sbjct: 229 S 229
Score = 40.0 bits (92), Expect = 0.003
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 241 VHMRGLPFQANAQDIINFFAPLK--PVRITMEYSSSGKATGEADVHFETHEDAVAAM--L 296
+ + LPF+AN +I++FF + P ++++Y+ G TGEA V + +A+AA+ L
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 297 KDR 299
DR
Sbjct: 987 NDR 989
Score = 30.8 bits (68), Expect = 1.7
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 90 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGR-RKTGEAYV 133
+++ LP+ N +I+DFF G I+ + + Y + TGEA V
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIV 971
Score = 28.5 bits (62), Expect = 8.2
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 3 DVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHR 52
+V FF+D + E+ I+ L + G G+AL++ +SE+ KA +R
Sbjct: 415 EVQKFFADFLL--AEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNR 462
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 61.6 bits (148), Expect = 9e-10
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 90 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 149
V+LRG P++ EK++++F A L V I V + G KTG +V F E QAL +R
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHG-NKTGYIFVDFSNEEEVKQALKCNR 354
Query: 150 EEIGNRYIEIF-----PSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEH----EV 200
E +G RYIE+F P+ + + S++G+ + + + E +F +
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTST 414
Query: 201 NEDIQPM-TAFESEKEIELPKEVPEKLPEAADFGT 234
ED++ + + + E+ P + K P+ F T
Sbjct: 415 EEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 219 PKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT 278
P E + + A+ ++ H V +RG PF ++++ F APLKPV I + ++ G T
Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKT 333
Query: 279 GEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
G V F E+ A+ +R ++ RYIE+F
Sbjct: 334 GYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 55.8 bits (133), Expect = 5e-08
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 20 IHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQV 79
I + N G + G ++ +E++V++AL+ +R YMG RY+EV+ N
Sbjct: 322 IRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTT 381
Query: 80 KS------------SPVVNDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRR 126
KS + G + +R LPY+ E+D+ F+ + ++ + +D ++
Sbjct: 382 KSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKK 441
Query: 127 KTGEAYVQFEEPEMANQALLKHREEI-GNRYIEIFPS----RRNEVRTHVG--SYKGKKI 179
G A++ F PE A +A + ++ R + + PS +E + +G SYK KK
Sbjct: 442 PKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKE 501
Query: 180 A 180
A
Sbjct: 502 A 502
Score = 35.0 bits (79), Expect = 0.088
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 220 KEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDI---INFFAPLKPVRITMEYSSSGK 276
K+VP K TTS + +R +PFQA++++I + F LK VR+ + + +G
Sbjct: 823 KQVPRKQ-------TTSK---ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGT 872
Query: 277 ATGEADVHFETHEDAVAAM--LKDRSHVHHRYIEL 309
G V F T +DA A L +H++ R + L
Sbjct: 873 HRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 907
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 61.6 bits (148), Expect = 9e-10
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 90 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 149
V+LRG P++ EK++++F A L V I V + G KTG +V F E QAL +R
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHG-NKTGYIFVDFSNEEEVKQALKCNR 354
Query: 150 EEIGNRYIEIF-----PSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEH----EV 200
E +G RYIE+F P+ + + S++G+ + + + E +F +
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTST 414
Query: 201 NEDIQPM-TAFESEKEIELPKEVPEKLPEAADFGT 234
ED++ + + + E+ P + K P+ F T
Sbjct: 415 EEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 219 PKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT 278
P E + + A+ ++ H V +RG PF ++++ F APLKPV I + ++ G T
Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKT 333
Query: 279 GEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
G V F E+ A+ +R ++ RYIE+F
Sbjct: 334 GYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 55.8 bits (133), Expect = 5e-08
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 20 IHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQV 79
I + N G + G ++ +E++V++AL+ +R YMG RY+EV+ N
Sbjct: 322 IRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTT 381
Query: 80 KS------------SPVVNDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRR 126
KS + G + +R LPY+ E+D+ F+ + ++ + +D ++
Sbjct: 382 KSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKK 441
Query: 127 KTGEAYVQFEEPEMANQALLKHREEI-GNRYIEIFPS----RRNEVRTHVG--SYKGKKI 179
G A++ F PE A +A + ++ R + + PS +E + +G SYK KK
Sbjct: 442 PKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKE 501
Query: 180 A 180
A
Sbjct: 502 A 502
Score = 35.0 bits (79), Expect = 0.088
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 220 KEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDI---INFFAPLKPVRITMEYSSSGK 276
K+VP K TTS + +R +PFQA++++I + F LK VR+ + + +G
Sbjct: 823 KQVPRKQ-------TTSK---ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGT 872
Query: 277 ATGEADVHFETHEDAVAAM--LKDRSHVHHRYIEL 309
G V F T +DA A L +H++ R + L
Sbjct: 873 HRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 907
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 61.6 bits (148), Expect = 9e-10
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 90 VRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHR 149
V+LRG P++ EK++++F A L V I V + G KTG +V F E QAL +R
Sbjct: 296 VKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHG-NKTGYIFVDFSNEEEVKQALKCNR 354
Query: 150 EEIGNRYIEIF-----PSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEH----EV 200
E +G RYIE+F P+ + + S++G+ + + + E +F +
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTST 414
Query: 201 NEDIQPM-TAFESEKEIELPKEVPEKLPEAADFGT 234
ED++ + + + E+ P + K P+ F T
Sbjct: 415 EEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 219 PKEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKAT 278
P E + + A+ ++ H V +RG PF ++++ F APLKPV I + ++ G T
Sbjct: 274 PPEARAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKT 333
Query: 279 GEADVHFETHEDAVAAMLKDRSHVHHRYIELF 310
G V F E+ A+ +R ++ RYIE+F
Sbjct: 334 GYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365
Score = 55.8 bits (133), Expect = 5e-08
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 20 IHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQV 79
I + N G + G ++ +E++V++AL+ +R YMG RY+EV+ N
Sbjct: 322 IRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTT 381
Query: 80 KS------------SPVVNDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRR 126
KS + G + +R LPY+ E+D+ F+ + ++ + +D ++
Sbjct: 382 KSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKK 441
Query: 127 KTGEAYVQFEEPEMANQALLKHREEI-GNRYIEIFPS----RRNEVRTHVG--SYKGKKI 179
G A++ F PE A +A + ++ R + + PS +E + +G SYK KK
Sbjct: 442 PKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKE 501
Query: 180 A 180
A
Sbjct: 502 A 502
Score = 35.0 bits (79), Expect = 0.088
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 220 KEVPEKLPEAADFGTTSSLHFVHMRGLPFQANAQDI---INFFAPLKPVRITMEYSSSGK 276
K+VP K TTS + +R +PFQA++++I + F LK VR+ + + +G
Sbjct: 823 KQVPRKQ-------TTSK---ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGT 872
Query: 277 ATGEADVHFETHEDAVAAM--LKDRSHVHHRYIEL 309
G V F T +DA A L +H++ R + L
Sbjct: 873 HRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVL 907
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 42.0 bits (97), Expect = 7e-04
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 23 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSS 82
+ + G RG +E + E+ +ALE R + R + V ++ + K + +S
Sbjct: 738 IFSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTS 797
Query: 83 PVVNDGVVRLRGLPYSCNEKDIVDFF-AGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMA 141
+ + + GLP+SC ++++ + A + D+ V + G+ K G AYV++E A
Sbjct: 798 --LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPK-GLAYVEYENESQA 854
Query: 142 NQALLK 147
+QA++K
Sbjct: 855 SQAVMK 860
Score = 30.0 bits (66), Expect = 2.8
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 90 VRLRGLPYSCNEKDIVD---FFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALL 146
V + LPYS E D F A +V I + RG + G YV+F+E + A QAL
Sbjct: 706 VFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFR-GYCYVEFKEEKSALQALE 764
Query: 147 KHREEIGNRYIEIFP 161
R+ + R + + P
Sbjct: 765 MDRKSVEGRPMFVSP 779
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 42.0 bits (97), Expect = 7e-04
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 94 GLPYSCNEKDIVDFFAGLNIV-DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 152
G+P++C E ++ ++F +V ++ + D +R G ++ FE+ + +QA+ H +I
Sbjct: 119 GIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDI 178
Query: 153 GNRYIEIFPSRRNEVRTHVGSYKGKKIAS 181
+ +E+ +R E R G+ AS
Sbjct: 179 MGKKVEV---KRAEPRDSKSQAPGQPGAS 204
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 42.0 bits (97), Expect = 7e-04
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 94 GLPYSCNEKDIVDFFAGLNIV-DITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEI 152
G+P++C E ++ ++F +V ++ + D +R G ++ FE+ + +QA+ H +I
Sbjct: 119 GIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDI 178
Query: 153 GNRYIEIFPSRRNEVRTHVGSYKGKKIAS 181
+ +E+ +R E R G+ AS
Sbjct: 179 MGKKVEV---KRAEPRDSKSQAPGQPGAS 204
>gi|50053795 eukaryotic translation initiation factor 4B [Homo
sapiens]
Length = 611
Score = 41.6 bits (96), Expect = 0.001
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 92 LRGLPYSCNEKDIVDFFAGLNIVDITFVMD-YRGRRKTGEAYVQFEEPEMANQALLKHRE 150
L LPY E+ I +FF GLNI + + R G Y +FE+ + AL + E
Sbjct: 100 LGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEE 159
Query: 151 EIGNRYIEI 159
+GNR I +
Sbjct: 160 SLGNRRIRV 168
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 37.0 bits (84), Expect = 0.023
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 86 NDGVVRLRGLPYSCNEKDIVDFFAGLN-IVDITFVMDYRGRRKTGEAYVQFEEPEMANQA 144
++G + + GL + +KD+ D+F+ +VD T +D R G +V F+E E ++
Sbjct: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
Query: 145 LLKHREEIGNRYIEIFPSRRNEVRT 169
+ + ++ + I+ P R ++T
Sbjct: 136 MDQKEHKLNGKVID--PKRAKAMKT 158
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,730,009
Number of Sequences: 37866
Number of extensions: 521080
Number of successful extensions: 1906
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1546
Number of HSP's gapped (non-prelim): 248
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.