Guide to the Human Genome
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Name: ESRP1 Sequence: fasta or formatted (608aa) NCBI GI: 170763527
Description:

RNA binding motif protein 35A isoform 4

Referenced in:

hnRNP
RNA-binding Proteins

Other entries for this name:
alt prot [677aa] RNA binding motif protein 35A isoform 2
alt prot [659aa] RNA binding motif protein 35A isoform 3
alt prot [604aa] RNA binding motif protein 35A isoform 5
alt prot [681aa] RNA binding motif protein 35A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         50           2
 C cysteine            2.5         15           2
 D aspartate           4.9         30           2
 E glutamate           6.4         39           2
 F phenylalanine       5.4         33           2
 G glycine             6.4         39           2
 H histidine           2.3         14           2
 I isoleucine          4.8         29           2
 K lysine              5.3         32           2
 L leucine             9.5         58           2
 M methionine          2.3         14           1
 N asparagine          4.1         25           1
 P proline             6.2         38           3
 Q glutamine           4.6         28           2
 R arginine            5.3         32           2
 S serine              6.2         38           3
 T threonine           5.1         31           1
 V valine              6.7         41           2
 W tryptophan          0.3          2           1
 Y tyrosine            3.3         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 35A isoform 4 
ESRP1                 0.999   RNA binding motif protein 35A isoform 1 
ESRP1                 0.988   RNA binding motif protein 35A isoform 5 
ESRP1                 0.986   RNA binding motif protein 35A isoform 3 
ESRP1                 0.986   RNA binding motif protein 35A isoform 2 
ESRP2                 0.606   RNA binding motif protein 35B 
GRSF1                 0.092   G-rich RNA sequence binding factor 1 isoform 1 [Hom...
HNRNPH2               0.087   heterogeneous nuclear ribonucleoprotein H2 
HNRNPH2               0.087   heterogeneous nuclear ribonucleoprotein H2 
HNRNPH1               0.087   heterogeneous nuclear ribonucleoprotein H1 
HNRNPF                0.084   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.084   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.084   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.084   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.084   heterogeneous nuclear ribonucleoprotein F 
HNRNPF                0.084   heterogeneous nuclear ribonucleoprotein F 
GRSF1                 0.076   G-rich RNA sequence binding factor 1 isoform 2 [Hom...
RBM12                 0.064   RNA binding motif protein 12 
RBM12                 0.064   RNA binding motif protein 12 
HNRNPH3               0.042   heterogeneous nuclear ribonucleoprotein H3 isoform a...
HNRNPH3               0.042   heterogeneous nuclear ribonucleoprotein H3 isoform b...
RBM12B                0.036   RNA binding motif protein 12B 
RBM19                 0.028   RNA binding motif protein 19 
RBM19                 0.028   RNA binding motif protein 19 
RBM19                 0.028   RNA binding motif protein 19 
SMG7                  0.007   SMG-7 homolog isoform 1 
SMG7                  0.007   SMG-7 homolog isoform 4 
SMG7                  0.007   SMG-7 homolog isoform 2 
RHOBTB2               0.007   Rho-related BTB domain containing 2 isoform 3 [Homo...
RHOBTB2               0.007   Rho-related BTB domain containing 2 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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