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Search of human proteins with 148806867
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148806867 metaxin 3 [Homo sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148806867 metaxin 3 [Homo sapiens] 630 0.0
gi|38569475 metaxin 1 isoform 1 [Homo sapiens] 286 1e-77
gi|38569477 metaxin 1 isoform 2 [Homo sapiens] 221 8e-58
gi|5729937 metaxin 2 [Homo sapiens] 96 4e-20
gi|24308336 hypothetical protein LOC84553 [Homo sapiens] 46 4e-05
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens] 32 0.95
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens] 32 0.95
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens] 32 0.95
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens] 32 0.95
gi|153791492 eukaryotic translation initiation factor 3, subunit... 31 1.6
gi|68160947 secretogranin II precursor [Homo sapiens] 31 1.6
gi|83700233 eukaryotic translation initiation factor 3, subunit ... 31 1.6
gi|4503525 eukaryotic translation initiation factor 3, subunit C... 31 1.6
gi|223633941 hypothetical protein LOC389730 [Homo sapiens] 30 2.8
gi|91206406 hypothetical protein LOC642265 [Homo sapiens] 30 2.8
gi|169174618 PREDICTED: family with sequence similarity 75, memb... 30 2.8
gi|239743732 PREDICTED: family with sequence similarity 75, memb... 30 2.8
gi|153791826 hypothetical protein LOC26165 [Homo sapiens] 30 2.8
gi|133892686 hypothetical protein LOC727830 [Homo sapiens] 30 2.8
gi|146231958 hypothetical protein LOC647060 [Homo sapiens] 30 2.8
gi|165377334 hypothetical protein LOC727905 [Homo sapiens] 30 2.8
gi|65301141 PH domain and leucine rich repeat protein phosphatas... 30 3.6
gi|9945318 MAX binding protein [Homo sapiens] 30 3.6
gi|148612875 RUN and TBC1 domain containing 2 isoform 4 [Homo sa... 29 4.7
gi|148612840 RUN and TBC1 domain containing 2 isoform 3 [Homo sa... 29 4.7
gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo sap... 29 4.7
gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo sap... 29 4.7
>gi|148806867 metaxin 3 [Homo sapiens]
Length = 312
Score = 630 bits (1625), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MAAPLELSCWGGGWGLPSVHSESLVVMAYAKFSGAPLKVNVIDNTWRGSRGDVPILTTED 60
MAAPLELSCWGGGWGLPSVHSESLVVMAYAKFSGAPLKVNVIDNTWRGSRGDVPILTTED
Sbjct: 1 MAAPLELSCWGGGWGLPSVHSESLVVMAYAKFSGAPLKVNVIDNTWRGSRGDVPILTTED 60
Query: 61 DMVSQPAKILNFLRKQKYNADYELSAKQGADTLAYIALLEEKLLPAVLHTFWVESDNYFT 120
DMVSQPAKILNFLRKQKYNADYELSAKQGADTLAYIALLEEKLLPAVLHTFWVESDNYFT
Sbjct: 61 DMVSQPAKILNFLRKQKYNADYELSAKQGADTLAYIALLEEKLLPAVLHTFWVESDNYFT 120
Query: 121 VTKPWFASQIPFPLSLILPGRMSKGALNRILLTRGQPPLYHLREVEAQIYRDAKECLNLL 180
VTKPWFASQIPFPLSLILPGRMSKGALNRILLTRGQPPLYHLREVEAQIYRDAKECLNLL
Sbjct: 121 VTKPWFASQIPFPLSLILPGRMSKGALNRILLTRGQPPLYHLREVEAQIYRDAKECLNLL 180
Query: 181 SNRLGTSQFFFGDTPSTLDAYVFGFLAPLYKVRFPKVQLQEHLKQLSNLCRFCDDILSSY 240
SNRLGTSQFFFGDTPSTLDAYVFGFLAPLYKVRFPKVQLQEHLKQLSNLCRFCDDILSSY
Sbjct: 181 SNRLGTSQFFFGDTPSTLDAYVFGFLAPLYKVRFPKVQLQEHLKQLSNLCRFCDDILSSY 240
Query: 241 FRLSLGGISPAGQETVDANLQKLTQLVNKESNLIEKMDDNLRQSPQLPPRKLPTLKLTPA 300
FRLSLGGISPAGQETVDANLQKLTQLVNKESNLIEKMDDNLRQSPQLPPRKLPTLKLTPA
Sbjct: 241 FRLSLGGISPAGQETVDANLQKLTQLVNKESNLIEKMDDNLRQSPQLPPRKLPTLKLTPA 300
Query: 301 EEENNSFQRLSP 312
EEENNSFQRLSP
Sbjct: 301 EEENNSFQRLSP 312
>gi|38569475 metaxin 1 isoform 1 [Homo sapiens]
Length = 466
Score = 286 bits (733), Expect = 1e-77
Identities = 137/274 (50%), Positives = 193/274 (70%), Gaps = 6/274 (2%)
Query: 1 MAAPLELSCWGGGWGLPSVHSESLVVMAYAKFSGAPLKVNVIDNTWRGSRGDVPIL-TTE 59
MAAP+EL CW GGWGLPSV +SL V+ YA+F+GAPLKV+ I N W+ G +P L T+
Sbjct: 150 MAAPMELFCWSGGWGLPSVDLDSLAVLTYARFTGAPLKVHKISNPWQSPSGTLPALRTSH 209
Query: 60 DDMVSQPAKILNFLRKQKYNADYELSAKQGADTLAYIALLEEKLLPAVLHTFWVESDNYF 119
+++S P KI+ LRK+KYNADY+LSA+QGADTLA+++LLEEKLLP ++HTFW+++ NY
Sbjct: 210 GEVISVPHKIITHLRKEKYNADYDLSARQGADTLAFMSLLEEKLLPVLVHTFWIDTKNYV 269
Query: 120 TVTKPWFASQIPFPLSLILPGRMSKGALNRILLTRGQPPLYHLREVEAQIYRDAKECLNL 179
VT+ W+A +PFPL+ LPGRM + + R+ L G+ E+E ++YR+A+ECL L
Sbjct: 270 EVTRKWYAEAMPFPLNFFLPGRMQRQYMERLQLLTGEHRPEDEEELEKELYREARECLTL 329
Query: 180 LSNRLGTSQFFFGDTPSTLDAYVFGFLAPLYKVRFPKVQLQEHLKQLSNLCRFCDDILSS 239
LS RLG+ +FFFGD P++LDA+VF +LA L + + P +LQ HL+ L NLC +C ILS
Sbjct: 330 LSQRLGSQKFFFGDAPASLDAFVFSYLALLLQAKLPSGKLQVHLRGLHNLCAYCTHILSL 389
Query: 240 YFRLSLGGI-----SPAGQETVDANLQKLTQLVN 268
YF + +PAG ET + ++ Q+++
Sbjct: 390 YFPWDGAEVPPQRQTPAGPETEEEPYRRRNQILS 423
>gi|38569477 metaxin 1 isoform 2 [Homo sapiens]
Length = 435
Score = 221 bits (562), Expect = 8e-58
Identities = 113/274 (41%), Positives = 163/274 (59%), Gaps = 37/274 (13%)
Query: 1 MAAPLELSCWGGGWGLPSVHSESLVVMAYAKFSGAPLKVNVIDNTWRGSRGDVPIL-TTE 59
MAAP+EL CW GGWGLPSV +SL V+ YA+F+GAPLKV+ I N W+ G +P L T+
Sbjct: 150 MAAPMELFCWSGGWGLPSVDLDSLAVLTYARFTGAPLKVHKISNPWQSPSGTLPALRTSH 209
Query: 60 DDMVSQPAKILNFLRKQKYNADYELSAKQGADTLAYIALLEEKLLPAVLHTFWVESDNYF 119
+++S P KI+ LRK+ +HTFW+++ NY
Sbjct: 210 GEVISVPHKIITHLRKE-------------------------------VHTFWIDTKNYV 238
Query: 120 TVTKPWFASQIPFPLSLILPGRMSKGALNRILLTRGQPPLYHLREVEAQIYRDAKECLNL 179
VT+ W+A +PFPL+ LPGRM + + R+ L G+ E+E ++YR+A+ECL L
Sbjct: 239 EVTRKWYAEAMPFPLNFFLPGRMQRQYMERLQLLTGEHRPEDEEELEKELYREARECLTL 298
Query: 180 LSNRLGTSQFFFGDTPSTLDAYVFGFLAPLYKVRFPKVQLQEHLKQLSNLCRFCDDILSS 239
LS RLG+ +FFFGD P++LDA+VF +LA L + + P +LQ HL+ L NLC +C ILS
Sbjct: 299 LSQRLGSQKFFFGDAPASLDAFVFSYLALLLQAKLPSGKLQVHLRGLHNLCAYCTHILSL 358
Query: 240 YFRLSLGGI-----SPAGQETVDANLQKLTQLVN 268
YF + +PAG ET + ++ Q+++
Sbjct: 359 YFPWDGAEVPPQRQTPAGPETEEEPYRRRNQILS 392
>gi|5729937 metaxin 2 [Homo sapiens]
Length = 263
Score = 95.9 bits (237), Expect = 4e-20
Identities = 67/227 (29%), Positives = 105/227 (46%), Gaps = 7/227 (3%)
Query: 16 LPSVHSESLVVMAYAKFSGAPLKVNVIDNT-WRGSRGDVPILTTEDDMVSQPAKILNFLR 74
L S ++ SL V A+ + P+KV N + G VP + + +VS+ I+ F++
Sbjct: 34 LLSDNAASLAVQAFLQMCNLPIKVVCRANAEYMSPSGKVPFIHVGNQVVSELGPIVQFVK 93
Query: 75 KQKYNADYELSAKQGADTLAYIALLEEKLLPAVLHTFWVESDNYFTVTKPWFASQIPFPL 134
+ ++ L Q A+ AY+ L+ LL A L+ W + +T + S P+PL
Sbjct: 94 AKGHSLSDGLEEVQKAEMKAYMELVNNMLLTAELYLQWCDEATVGEITHARYGSPYPWPL 153
Query: 135 SLILPGRMSKGALNRILLTRGQPPLYHLREVEAQIYRDAKECLNLLSNRLGTSQFFFGDT 194
+ IL + + R + G ++ Q+ D +C LS RLGT +FF
Sbjct: 154 NHIL-AYQKQWEVKRKMKAIGWG-----KKTLDQVLEDVDQCCQALSQRLGTQPYFFNKQ 207
Query: 195 PSTLDAYVFGFLAPLYKVRFPKVQLQEHLKQLSNLCRFCDDILSSYF 241
P+ LDA VFG L + + +L E +K SNL FC I YF
Sbjct: 208 PTELDALVFGHLYTILTTQLTNDELSEKVKNYSNLLAFCRRIEQHYF 254
>gi|24308336 hypothetical protein LOC84553 [Homo sapiens]
Length = 409
Score = 46.2 bits (108), Expect = 4e-05
Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 22/235 (9%)
Query: 15 GLPSVHSESLVVMAYAKFSGAPLKVNVIDNTWRG---SRGDVPILTTEDDMVSQPAKILN 71
G+PS+ L + Y + + P + N + G ++G +P + + VS I++
Sbjct: 111 GVPSLSPFCLKMETYLRMADLPYQ-----NYFGGKLSAQGKMPWIEYNHEKVSGTEFIID 165
Query: 72 FLR-KQKYNADYELSAKQGADTLAYIALLEEKLLPAVLHTFWVESDNYFTVTKPWFASQI 130
FL K N + L + A + A ++EE + + WV++ N T+ +
Sbjct: 166 FLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYWTLAYCQWVDNLNE---TRKMLSLSG 222
Query: 131 PFPLSLILPG---RMSKGALNRILLTRGQPPLYHLREVEAQIYRDAKECLNLLSNRLGTS 187
P S +L ++KG + R + G R E +IY ++ + L+ LG
Sbjct: 223 GGPFSNLLRWVVCHITKGIVKREMHGHGIG-----RFSEEEIYMLMEKDMRSLAGLLGDK 277
Query: 188 QFFFGDTPSTLDAYVFGFLAPLYKVRFPKVQLQEHLK-QLSNLCRFCDDILSSYF 241
++ G STLDA VFG LA P + + +K +L NL +C+ I ++
Sbjct: 278 KYIMGPKLSTLDATVFGHLAQAMWT-LPGTRPERLIKGELINLAMYCERIRRKFW 331
>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
Length = 1031
Score = 31.6 bits (70), Expect = 0.95
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 14 WGLPSVHSESLVVMAYAKFSGAPLKVNVIDNTW 46
WGLPS+HSESL + + +PLK +V + +
Sbjct: 149 WGLPSLHSESLEAIFLSSGGPSPLKWSVCSSVF 181
>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
Length = 1006
Score = 31.6 bits (70), Expect = 0.95
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 14 WGLPSVHSESLVVMAYAKFSGAPLKVNVIDNTW 46
WGLPS+HSESL + + +PLK +V + +
Sbjct: 124 WGLPSLHSESLEAIFLSSGGPSPLKWSVCSSVF 156
>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
Length = 1044
Score = 31.6 bits (70), Expect = 0.95
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 14 WGLPSVHSESLVVMAYAKFSGAPLKVNVIDNTW 46
WGLPS+HSESL + + +PLK +V + +
Sbjct: 162 WGLPSLHSESLEAIFLSSGGPSPLKWSVCSSVF 194
>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
Length = 1079
Score = 31.6 bits (70), Expect = 0.95
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 14 WGLPSVHSESLVVMAYAKFSGAPLKVNVIDNTW 46
WGLPS+HSESL + + +PLK +V + +
Sbjct: 197 WGLPSLHSESLEAIFLSSGGPSPLKWSVCSSVF 229
>gi|153791492 eukaryotic translation initiation factor 3, subunit
C-like [Homo sapiens]
Length = 914
Score = 30.8 bits (68), Expect = 1.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 46 WRGSRGDVPILTTEDDMVSQPAKILNFLRKQKYNADYELSAKQGADTLAYIALLE 100
W RG VP++ + M ++ +I + + +K N + K+G D A I LL+
Sbjct: 302 WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQ 356
>gi|68160947 secretogranin II precursor [Homo sapiens]
Length = 617
Score = 30.8 bits (68), Expect = 1.6
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 240 YFRLSLGGISPAGQETVDANLQKLTQLVNKESNLIEKMDDNLRQSPQLPPRKLPTLKLTP 299
+ R+ L + A E A + +N E N M D+ ++ Q P RKL ++ P
Sbjct: 110 WMRIILEALRQAENEPQSAPKENKPYALNSEKNFPMDMSDDY-ETQQWPERKLKHMQFPP 168
Query: 300 AEEEN---NSFQR 309
EEN N F+R
Sbjct: 169 MYEENSRDNPFKR 181
>gi|83700233 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 30.8 bits (68), Expect = 1.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 46 WRGSRGDVPILTTEDDMVSQPAKILNFLRKQKYNADYELSAKQGADTLAYIALLE 100
W RG VP++ + M ++ +I + + +K N + K+G D A I LL+
Sbjct: 301 WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQ 355
>gi|4503525 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 30.8 bits (68), Expect = 1.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 46 WRGSRGDVPILTTEDDMVSQPAKILNFLRKQKYNADYELSAKQGADTLAYIALLE 100
W RG VP++ + M ++ +I + + +K N + K+G D A I LL+
Sbjct: 301 WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQ 355
>gi|223633941 hypothetical protein LOC389730 [Homo sapiens]
Length = 1343
Score = 30.0 bits (66), Expect = 2.8
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 14 WGLPSVHSESLVVMAY 29
WGLPS+HSESLV A+
Sbjct: 417 WGLPSLHSESLVANAW 432
>gi|91206406 hypothetical protein LOC642265 [Homo sapiens]
Length = 1347
Score = 30.0 bits (66), Expect = 2.8
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 14 WGLPSVHSESLVVMAY 29
WGLPS+HSESLV A+
Sbjct: 417 WGLPSLHSESLVANAW 432
>gi|169174618 PREDICTED: family with sequence similarity 75, member
A4 isoform 2 [Homo sapiens]
Length = 1272
Score = 30.0 bits (66), Expect = 2.8
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 14 WGLPSVHSESLVVMAY 29
WGLPS+HSESLV A+
Sbjct: 342 WGLPSLHSESLVANAW 357
>gi|239743732 PREDICTED: family with sequence similarity 75, member
A4 isoform 1 [Homo sapiens]
Length = 1361
Score = 30.0 bits (66), Expect = 2.8
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 14 WGLPSVHSESLVVMAY 29
WGLPS+HSESLV A+
Sbjct: 431 WGLPSLHSESLVANAW 446
>gi|153791826 hypothetical protein LOC26165 [Homo sapiens]
Length = 1347
Score = 30.0 bits (66), Expect = 2.8
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 14 WGLPSVHSESLVVMAY 29
WGLPS+HSESLV A+
Sbjct: 417 WGLPSLHSESLVANAW 432
>gi|133892686 hypothetical protein LOC727830 [Homo sapiens]
Length = 1347
Score = 30.0 bits (66), Expect = 2.8
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 14 WGLPSVHSESLVVMAY 29
WGLPS+HSESLV A+
Sbjct: 417 WGLPSLHSESLVANAW 432
>gi|146231958 hypothetical protein LOC647060 [Homo sapiens]
Length = 1347
Score = 30.0 bits (66), Expect = 2.8
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 14 WGLPSVHSESLVVMAY 29
WGLPS+HSESLV A+
Sbjct: 417 WGLPSLHSESLVANAW 432
>gi|165377334 hypothetical protein LOC727905 [Homo sapiens]
Length = 1347
Score = 30.0 bits (66), Expect = 2.8
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 14 WGLPSVHSESLVVMAY 29
WGLPS+HSESLV A+
Sbjct: 417 WGLPSLHSESLVANAW 432
>gi|65301141 PH domain and leucine rich repeat protein
phosphatase-like [Homo sapiens]
Length = 1323
Score = 29.6 bits (65), Expect = 3.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 184 LGTSQFFFGDTPSTLDAYVFGFLAPLYKVRFPKVQLQEHLKQLSNLCRFC 233
LG F+G+ P +D L+ +Y VR K QL + ++L LC C
Sbjct: 131 LGCMIRFYGEKPCHMDRLDRILLSGIYNVRKGKTQLHKWAERLVVLCGTC 180
>gi|9945318 MAX binding protein [Homo sapiens]
Length = 582
Score = 29.6 bits (65), Expect = 3.6
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 286 QLPPRKLPTLKLTPAEEENNSFQRLSP 312
Q PP L TLKL PAEE +S Q+ P
Sbjct: 190 QPPPPTLGTLKLAPAEEVKSSEQKKRP 216
>gi|148612875 RUN and TBC1 domain containing 2 isoform 4 [Homo
sapiens]
Length = 1032
Score = 29.3 bits (64), Expect = 4.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 254 ETVDANLQKLTQLVNKESNLIEKMDDNLRQSPQLP 288
E + +Q L QL+ N I+ + +N+R+ P+LP
Sbjct: 85 EDLSRKVQDLEQLIESARNQIQGLQENVRKLPKLP 119
>gi|148612840 RUN and TBC1 domain containing 2 isoform 3 [Homo
sapiens]
Length = 1093
Score = 29.3 bits (64), Expect = 4.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 254 ETVDANLQKLTQLVNKESNLIEKMDDNLRQSPQLP 288
E + +Q L QL+ N I+ + +N+R+ P+LP
Sbjct: 85 EDLSRKVQDLEQLIESARNQIQGLQENVRKLPKLP 119
>gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo
sapiens]
Length = 1087
Score = 29.3 bits (64), Expect = 4.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 254 ETVDANLQKLTQLVNKESNLIEKMDDNLRQSPQLP 288
E + +Q L QL+ N I+ + +N+R+ P+LP
Sbjct: 85 EDLSRKVQDLEQLIESARNQIQGLQENVRKLPKLP 119
>gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo
sapiens]
Length = 1148
Score = 29.3 bits (64), Expect = 4.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 254 ETVDANLQKLTQLVNKESNLIEKMDDNLRQSPQLP 288
E + +Q L QL+ N I+ + +N+R+ P+LP
Sbjct: 85 EDLSRKVQDLEQLIESARNQIQGLQENVRKLPKLP 119
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,142,884
Number of Sequences: 37866
Number of extensions: 543545
Number of successful extensions: 1342
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1312
Number of HSP's gapped (non-prelim): 28
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.