Guide to the Human Genome
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Name: C6orf168 Sequence: fasta or formatted (409aa) NCBI GI: 24308336
Description:

hypothetical protein LOC84553

Referenced in:

Mitochondria

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         22           4
 C cysteine            1.5          6           1
 D aspartate           6.1         25           3
 E glutamate           7.8         32           3
 F phenylalanine       5.4         22           2
 G glycine             8.3         34           3
 H histidine           3.7         15           2
 I isoleucine          5.1         21           2
 K lysine              5.4         22           2
 L leucine            10.0         41           2
 M methionine          3.7         15           1
 N asparagine          3.4         14           2
 P proline             4.2         17           1
 Q glutamine           2.4         10           2
 R arginine            4.4         18           2
 S serine              7.3         30           2
 T threonine           5.1         21           1
 V valine              3.7         15           2
 W tryptophan          3.2         13           2
 Y tyrosine            3.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84553 
MTX2                  0.050   metaxin 2 
MTX1                  0.030   metaxin 1 isoform 1 
MTX3                  0.025   metaxin 3 
MTX1                  0.017   metaxin 1 isoform 2 
CHD6                  0.013   chromodomain helicase DNA binding protein 6 
FIP1L1                0.006   FIP1 like 1 isoform 3 
FIP1L1                0.006   FIP1 like 1 isoform 2 
SLC29A2               0.006   solute carrier family 29 (nucleoside transporters), ...
FOXO3                 0.005   forkhead box O3A 
FOXO3                 0.005   forkhead box O3A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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