Guide to the Human Genome
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Name: C2orf60 Sequence: fasta or formatted (315aa) NCBI GI: 89242134
Description:

hypothetical protein LOC129450

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         20           2
 C cysteine            1.0          3           1
 D aspartate           6.7         21           1
 E glutamate           7.3         23           2
 F phenylalanine       6.3         20           2
 G glycine             4.8         15           2
 H histidine           2.5          8           1
 I isoleucine          4.1         13           1
 K lysine              8.3         26           2
 L leucine            10.2         32           2
 M methionine          1.6          5           1
 N asparagine          2.5          8           1
 P proline             5.4         17           1
 Q glutamine           4.8         15           1
 R arginine            5.7         18           2
 S serine              6.0         19           2
 T threonine           3.2         10           1
 V valine              7.3         23           2
 W tryptophan          1.3          4           1
 Y tyrosine            4.8         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC129450 
JMJD5                 0.123   jumonji domain containing 5 isoform 1 
JMJD5                 0.123   jumonji domain containing 5 isoform 2 
HSPBAP1               0.083   Hspb associated protein 1 
HIF1AN                0.079   hypoxia-inducible factor 1, alpha subunit inhibitor...
JMJD7                 0.062   jumonji domain containing 7 
JMJD8                 0.019   jumonji domain containing 8 
JHDM1D                0.016   jumonji C domain containing histone demethylase 1 ho...
JMJD4                 0.011   jumonji domain containing 4 isoform 2 
JMJD4                 0.011   jumonji domain containing 4 isoform 1 
PHF8                  0.010   PHD finger protein 8 
WBSCR22               0.008   Williams Beuren syndrome chromosome region 22 protei...
C14orf169             0.008   chromosome 14 open reading frame 169 
IGSF2                 0.006   immunoglobulin superfamily, member 2 
ADK                   0.006   adenosine kinase isoform b 
ADK                   0.006   adenosine kinase isoform a 
PHF2                  0.006   PHD finger protein 2 
ADAMTSL1              0.006   ADAMTS-like 1 isoform 4 precursor 
MINA                  0.005   MYC induced nuclear antigen isoform b 
MINA                  0.005   MYC induced nuclear antigen isoform a 
MINA                  0.005   MYC induced nuclear antigen isoform a 
MYO1E                 0.005   myosin IE 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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