Guide to the Human Genome
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Name: JMJD7 Sequence: fasta or formatted (316aa) NCBI GI: 167860114
Description:

jumonji domain containing 7

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         32           3
 C cysteine            2.2          7           1
 D aspartate           5.4         17           1
 E glutamate           7.0         22           2
 F phenylalanine       4.1         13           1
 G glycine             3.8         12           1
 H histidine           3.2         10           2
 I isoleucine          1.6          5           2
 K lysine              3.2         10           1
 L leucine            12.0         38           2
 M methionine          2.2          7           2
 N asparagine          1.9          6           1
 P proline             9.5         30           2
 Q glutamine           4.1         13           2
 R arginine            5.1         16           2
 S serine              5.7         18           1
 T threonine           3.5         11           1
 V valine              7.6         24           2
 W tryptophan          2.5          8           1
 Y tyrosine            5.4         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   jumonji domain containing 7 
JMJD7-PLA2G4B         0.729   JMJD7-PLA2G4B protein 
JMJD5                 0.108   jumonji domain containing 5 isoform 1 
JMJD5                 0.108   jumonji domain containing 5 isoform 2 
HSPBAP1               0.064   Hspb associated protein 1 
C2orf60               0.060   hypothetical protein LOC129450 
HIF1AN                0.055   hypoxia-inducible factor 1, alpha subunit inhibitor...
JMJD4                 0.028   jumonji domain containing 4 isoform 2 
JMJD4                 0.028   jumonji domain containing 4 isoform 1 
JHDM1D                0.022   jumonji C domain containing histone demethylase 1 ho...
JMJD8                 0.017   jumonji domain containing 8 
PHF8                  0.014   PHD finger protein 8 
JMJD6                 0.013   jumonji domain containing 6 isoform 1 
JMJD6                 0.013   jumonji domain containing 6 isoform 2 
SMAD4                 0.009   mothers against decapentaplegic homolog 4 
ADAR                  0.005   adenosine deaminase, RNA-specific isoform c 
ADAR                  0.005   adenosine deaminase, RNA-specific isoform b 
ADAR                  0.005   adenosine deaminase, RNA-specific isoform a 
RTKN2                 0.005   rhotekin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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