Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC641765 Sequence: fasta or formatted (265aa) NCBI GI: 239749152
Description:

PREDICTED: similar to hCG1983816

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt mRNA [265aa] PREDICTED: similar to hCG1983816
alt prot [298aa] PREDICTED: similar to hCG1983816
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         12           1
 C cysteine            1.1          3           1
 D aspartate           4.2         11           2
 E glutamate           8.7         23           2
 F phenylalanine       4.9         13           1
 G glycine             7.2         19           1
 H histidine           1.9          5           2
 I isoleucine          7.2         19           2
 K lysine              6.0         16           1
 L leucine            10.6         28           2
 M methionine          1.1          3           1
 N asparagine          4.2         11           1
 P proline             7.9         21           2
 Q glutamine           6.0         16           4
 R arginine            6.0         16           2
 S serine              5.7         15           2
 T threonine           4.2         11           1
 V valine              4.9         13           2
 W tryptophan          1.5          4           1
 Y tyrosine            2.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1983816 
LOC641765             1.000   PREDICTED: similar to hCG1983816 
LOC641765             0.923   PREDICTED: similar to hCG1983816 
GTF2IRD1              0.704   GTF2I repeat domain containing 1 isoform 1 
GTF2IRD1              0.629   GTF2I repeat domain containing 1 isoform 2 
GTF2I                 0.205   general transcription factor II, i isoform 3 
GTF2I                 0.205   general transcription factor II, i isoform 2 
GTF2I                 0.205   general transcription factor II, i isoform 1 
GTF2I                 0.205   general transcription factor II, i isoform 4 
GTF2IRD2              0.122   GTF2I repeat domain containing 2 
GTF2IRD2B             0.122   GTF2I repeat domain containing 2B 
LOC100290207          0.025   PREDICTED: hypothetical protein XP_002348308, parti...
LOC100288291          0.025   PREDICTED: hypothetical protein XP_002344174 
LOC100291900          0.021   PREDICTED: similar to hCG2006635, partial 
KIF18B                0.012   kinesin family member 18B 
ATAD2                 0.010   ATPase family, AAA domain containing 2 
DOPEY1                0.008   dopey family member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press