Search of human proteins with 14277679

Search of human proteins with 14277679

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14277679 protocadherin gamma subfamily C, 3 isoform 3 [Homo
sapiens]
         (134 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14277679 protocadherin gamma subfamily C, 3 isoform 3 [Homo s...   280   3e-76
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs...   260   3e-70
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs...   260   3e-70
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs...   260   3e-70
gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precur...   260   3e-70
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur...   259   5e-70
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs...   259   6e-70
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs...   258   8e-70
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs...   258   8e-70
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs...   258   8e-70
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs...   258   8e-70
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur...   258   8e-70
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs...   258   8e-70
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs...   258   8e-70
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs...   258   8e-70
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs...   258   8e-70
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs...   258   8e-70
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs...   258   8e-70
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs...   258   8e-70
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs...   258   8e-70
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs...   258   8e-70
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs...   258   8e-70
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs...   258   8e-70
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs...   258   8e-70
gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens]    42   1e-04
gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo sapi...    41   3e-04
gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo sapi...    41   3e-04
gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens]    41   3e-04
gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]    40   4e-04
gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo sapi...    40   4e-04

>gi|14277679 protocadherin gamma subfamily C, 3 isoform 3 [Homo
           sapiens]
          Length = 134

 Score =  280 bits (715), Expect = 3e-76
 Identities = 134/134 (100%), Positives = 134/134 (100%)

Query: 1   MVPEAWRSGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASE 60
           MVPEAWRSGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASE
Sbjct: 1   MVPEAWRSGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASE 60

Query: 61  AADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAG 120
           AADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAG
Sbjct: 61  AADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAG 120

Query: 121 GNGNKKKSGKKEKK 134
           GNGNKKKSGKKEKK
Sbjct: 121 GNGNKKKSGKKEKK 134


>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
           [Homo sapiens]
          Length = 934

 Score =  260 bits (664), Expect = 3e-70
 Identities = 125/126 (99%), Positives = 125/126 (99%)

Query: 9   GLQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTL 68
           G QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTL
Sbjct: 809 GQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTL 868

Query: 69  GGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKS 128
           GGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKS
Sbjct: 869 GGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKS 928

Query: 129 GKKEKK 134
           GKKEKK
Sbjct: 929 GKKEKK 934


>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  260 bits (664), Expect = 3e-70
 Identities = 125/126 (99%), Positives = 125/126 (99%)

Query: 9   GLQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTL 68
           G QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTL
Sbjct: 807 GQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTL 866

Query: 69  GGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKS 128
           GGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKS
Sbjct: 867 GGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKS 926

Query: 129 GKKEKK 134
           GKKEKK
Sbjct: 927 GKKEKK 932


>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 923

 Score =  260 bits (664), Expect = 3e-70
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 10  LQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLG 69
           LQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLG
Sbjct: 799 LQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLG 858

Query: 70  GGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSG 129
           GGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSG
Sbjct: 859 GGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSG 918

Query: 130 KKEKK 134
           KKEKK
Sbjct: 919 KKEKK 923


>gi|14196455 protocadherin gamma subfamily A, 11 isoform 3 precursor
           [Homo sapiens]
          Length = 750

 Score =  260 bits (664), Expect = 3e-70
 Identities = 125/127 (98%), Positives = 126/127 (99%)

Query: 8   SGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 67
           +G QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST
Sbjct: 624 TGEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 683

Query: 68  LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 127
           LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK
Sbjct: 684 LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 743

Query: 128 SGKKEKK 134
           SGKKEKK
Sbjct: 744 SGKKEKK 750


>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
           [Homo sapiens]
          Length = 935

 Score =  259 bits (662), Expect = 5e-70
 Identities = 125/127 (98%), Positives = 125/127 (98%)

Query: 8   SGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 67
           S  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST
Sbjct: 809 SNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 868

Query: 68  LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 127
           LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK
Sbjct: 869 LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 928

Query: 128 SGKKEKK 134
           SGKKEKK
Sbjct: 929 SGKKEKK 935


>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 927

 Score =  259 bits (661), Expect = 6e-70
 Identities = 125/127 (98%), Positives = 125/127 (98%)

Query: 8   SGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 67
           S  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST
Sbjct: 801 SSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSST 860

Query: 68  LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 127
           LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK
Sbjct: 861 LGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKK 920

Query: 128 SGKKEKK 134
           SGKKEKK
Sbjct: 921 SGKKEKK 927


>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 809 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 868

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 869 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 928

Query: 131 KEKK 134
           KEKK
Sbjct: 929 KEKK 932


>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
           [Homo sapiens]
          Length = 938

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 815 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 874

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 875 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 934

Query: 131 KEKK 134
           KEKK
Sbjct: 935 KEKK 938


>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 944

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 821 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 880

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 881 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 940

Query: 131 KEKK 134
           KEKK
Sbjct: 941 KEKK 944


>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 809 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 868

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 869 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 928

Query: 131 KEKK 134
           KEKK
Sbjct: 929 KEKK 932


>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
           [Homo sapiens]
          Length = 936

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 813 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 872

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 873 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 932

Query: 131 KEKK 134
           KEKK
Sbjct: 933 KEKK 936


>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 808 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 867

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 868 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 927

Query: 131 KEKK 134
           KEKK
Sbjct: 928 KEKK 931


>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 808 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 867

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 868 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 927

Query: 131 KEKK 134
           KEKK
Sbjct: 928 KEKK 931


>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
           [Homo sapiens]
          Length = 930

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 807 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 866

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 867 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 926

Query: 131 KEKK 134
           KEKK
Sbjct: 927 KEKK 930


>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
           [Homo sapiens]
          Length = 923

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 800 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 859

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 860 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 919

Query: 131 KEKK 134
           KEKK
Sbjct: 920 KEKK 923


>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 808 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 867

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 868 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 927

Query: 131 KEKK 134
           KEKK
Sbjct: 928 KEKK 931


>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 809 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 868

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 869 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 928

Query: 131 KEKK 134
           KEKK
Sbjct: 929 KEKK 932


>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
           [Homo sapiens]
          Length = 929

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 806 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 865

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 866 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 925

Query: 131 KEKK 134
           KEKK
Sbjct: 926 KEKK 929


>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
           [Homo sapiens]
          Length = 929

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 806 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 865

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 866 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 925

Query: 131 KEKK 134
           KEKK
Sbjct: 926 KEKK 929


>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 809 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 868

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 869 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 928

Query: 131 KEKK 134
           KEKK
Sbjct: 929 KEKK 932


>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 931

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 808 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 867

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 868 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 927

Query: 131 KEKK 134
           KEKK
Sbjct: 928 KEKK 931


>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 809 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 868

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 869 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 928

Query: 131 KEKK 134
           KEKK
Sbjct: 929 KEKK 932


>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
           [Homo sapiens]
          Length = 932

 Score =  258 bits (660), Expect = 8e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 11  QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 70
           QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG
Sbjct: 809 QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGG 868

Query: 71  GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 130
           GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK
Sbjct: 869 GAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGK 928

Query: 131 KEKK 134
           KEKK
Sbjct: 929 KEKK 932


>gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 20/140 (14%)

Query: 8   SGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGT------WPNNQFDTEMLQAMILASAS-- 59
           SG    PN DWR+S + R G   S + ++ G        P+ Q+ T       ++SA+  
Sbjct: 796 SGNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT-------VSSATPE 848

Query: 60  -EAADGSSTLGGGAGTMGLSARYGPQFTLQHVP-DYRQNVYIPGSNATLT---NAAGKRD 114
            EA + S  +G G  +   + +YGP    Q  P +      IPGS A ++        + 
Sbjct: 849 PEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQI 908

Query: 115 GKAPAGGNGNKKKSGKKEKK 134
            K+     G K+++ KK+KK
Sbjct: 909 DKSDFITFGKKEETKKKKKK 928


>gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo
           sapiens]
          Length = 950

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 20/140 (14%)

Query: 8   SGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGT------WPNNQFDTEMLQAMILASAS-- 59
           +G    PN DWR+S + R G   S + ++ G        P+ Q+ T       ++SA+  
Sbjct: 796 TGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT-------VSSATPE 848

Query: 60  -EAADGSSTLGGGAGTMGLSARYGPQFTLQHVP-DYRQNVYIPGSNATLT---NAAGKRD 114
            EA + S  +G G  +   + +YGP    Q  P +      IPGS A ++        + 
Sbjct: 849 PEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQI 908

Query: 115 GKAPAGGNGNKKKSGKKEKK 134
            K+     G K+++ KK+KK
Sbjct: 909 DKSDFITFGKKEETKKKKKK 928


>gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo
           sapiens]
          Length = 949

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 20/145 (13%)

Query: 3   PEAWRSGLQAPPNTDWRFSQAQRPGTSGSQNGDDTGT------WPNNQFDTEMLQAMILA 56
           P +   G    PN DWR+S + R G   S + ++ G        P+ Q+ T       ++
Sbjct: 790 PGSNHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT-------VS 842

Query: 57  SAS---EAADGSSTLGGGAGTMGLSARYGPQFTLQHVP-DYRQNVYIPGSNATLT---NA 109
           SA+   EA + S  +G G  +   + +YGP    Q  P +      IPGS A ++     
Sbjct: 843 SATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEP 902

Query: 110 AGKRDGKAPAGGNGNKKKSGKKEKK 134
              +  K+     G K+++ KK+KK
Sbjct: 903 TNSQIDKSDFITFGKKEETKKKKKK 927


>gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens]
          Length = 948

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 20/139 (14%)

Query: 9   GLQAPPNTDWRFSQAQRPGTSGSQNGDDTGT------WPNNQFDTEMLQAMILASAS--- 59
           G    PN DWR+S + R G   S + ++ G        P+ Q+ T       ++SA+   
Sbjct: 795 GKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT-------VSSATPEP 847

Query: 60  EAADGSSTLGGGAGTMGLSARYGPQFTLQHVP-DYRQNVYIPGSNATLT---NAAGKRDG 115
           EA + S  +G G  +   + +YGP    Q  P +      IPGS A ++        +  
Sbjct: 848 EAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQID 907

Query: 116 KAPAGGNGNKKKSGKKEKK 134
           K+     G K+++ KK+KK
Sbjct: 908 KSDFITFGKKEETKKKKKK 926


>gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 20/134 (14%)

Query: 14  PNTDWRFSQAQRPGTSGSQNGDDTGT------WPNNQFDTEMLQAMILASAS---EAADG 64
           PN DWR+S + R G   S + ++ G        P+ Q+ T       ++SA+   EA + 
Sbjct: 802 PNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT-------VSSATPEPEAGEV 854

Query: 65  SSTLGGGAGTMGLSARYGPQFTLQHVP-DYRQNVYIPGSNATLT---NAAGKRDGKAPAG 120
           S  +G G  +   + +YGP    Q  P +      IPGS A ++        +  K+   
Sbjct: 855 SPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFI 914

Query: 121 GNGNKKKSGKKEKK 134
             G K+++ KK+KK
Sbjct: 915 TFGKKEETKKKKKK 928


>gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo
           sapiens]
          Length = 686

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 20/134 (14%)

Query: 14  PNTDWRFSQAQRPGTSGSQNGDDTGT------WPNNQFDTEMLQAMILASAS---EAADG 64
           PN DWR+S + R G   S + ++ G        P+ Q+ T       ++SA+   EA + 
Sbjct: 538 PNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT-------VSSATPEPEAGEV 590

Query: 65  SSTLGGGAGTMGLSARYGPQFTLQHVP-DYRQNVYIPGSNATLT---NAAGKRDGKAPAG 120
           S  +G G  +   + +YGP    Q  P +      IPGS A ++        +  K+   
Sbjct: 591 SPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFI 650

Query: 121 GNGNKKKSGKKEKK 134
             G K+++ KK+KK
Sbjct: 651 TFGKKEETKKKKKK 664


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.126    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,019,822
Number of Sequences: 37866
Number of extensions: 256033
Number of successful extensions: 821
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 115
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.