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Search of human proteins with 14249632
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14249632 LSM10, U7 small nuclear RNA associated [Homo
sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14249632 LSM10, U7 small nuclear RNA associated [Homo sapiens] 252 6e-68
gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... 50 3e-07
gi|169160654 PREDICTED: similar to small nuclear ribonucleoprote... 47 5e-06
gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo ... 45 1e-05
gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens] 42 1e-04
gi|4759160 small nuclear ribonucleoprotein polypeptide D3 [Homo ... 40 4e-04
gi|169881275 phosphorylase kinase, alpha 1 (muscle) isoform 2 [H... 28 1.8
gi|169881273 phosphorylase kinase, alpha 1 (muscle) isoform 1 [H... 28 1.8
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 28 2.3
gi|223468597 integrin alpha-V isoform 3 precursor [Homo sapiens] 28 2.3
gi|223468595 integrin alpha-V isoform 2 [Homo sapiens] 28 2.3
gi|4504763 integrin alpha-V isoform 1 precursor [Homo sapiens] 28 2.3
gi|4507131 small nuclear ribonucleoprotein polypeptide F [Homo s... 27 5.1
gi|55953087 G protein-binding protein CRFG [Homo sapiens] 27 5.1
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 26 8.7
>gi|14249632 LSM10, U7 small nuclear RNA associated [Homo sapiens]
Length = 123
Score = 252 bits (643), Expect = 6e-68
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MAVSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYT 60
MAVSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYT
Sbjct: 1 MAVSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYT 60
Query: 61 DRWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGRWEFPPK 120
DRWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGRWEFPPK
Sbjct: 61 DRWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGRWEFPPK 120
Query: 121 NCK 123
NCK
Sbjct: 121 NCK 123
>gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa
[Homo sapiens]
Length = 119
Score = 50.4 bits (119), Expect = 3e-07
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76
L+ L L T++L++ + HG I VD MN L V T + V+L+ L + G
Sbjct: 3 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRG 62
Query: 77 RNVRYVHIPDDVNI-TSTIEQQLQIIHRVRN-FGGKGQGR 114
N+RY +PD + + T ++ + ++ + R G+G+GR
Sbjct: 63 NNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>gi|169160654 PREDICTED: similar to small nuclear ribonucleoprotein
D1 polypeptide 16kDa [Homo sapiens]
Length = 119
Score = 46.6 bits (109), Expect = 5e-06
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76
L+ L L T+ L++ + HG + VD MN L V T + V+L+ L + G
Sbjct: 3 LVRFLMKLSHETVTIALKNRTQVHGTVTGVDVSMNTHLKAVKMTPKNREPVQLETLSIRG 62
Query: 77 RNVRYVHIPDDVNI-TSTIEQQLQIIHRVRN-FGGKGQGR 114
N+RY + D + + T ++ + ++ + R G+G+GR
Sbjct: 63 NNIRYFILLDSLPLDTLLVDVEPKVKSKKREAVAGRGRGR 102
>gi|10863977 LSM2 homolog, U6 small nuclear RNA associated [Homo
sapiens]
Length = 95
Score = 45.4 bits (106), Expect = 1e-05
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 22 QGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTD--RWGHQVKLDDLFVTGRNV 79
+ L G+ V+L+++ G + +VD ++NI+L ++ TD ++ H + + + F+ G V
Sbjct: 8 KSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVV 67
Query: 80 RYVHIPDD 87
RYV +P D
Sbjct: 68 RYVQLPAD 75
>gi|6912486 U6 snRNA-associated Sm-like protein 4 [Homo sapiens]
Length = 139
Score = 42.0 bits (97), Expect = 1e-04
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 20 LLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQV-KLDDLFVTGRN 78
LL+ Q V+L++ +G + + D +MNI L +V T R G + ++ + ++ G
Sbjct: 6 LLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
Query: 79 VRYVHIPDDVNITSTIEQ-----------QLQIIHRVRNFGGKGQG 113
++Y+ IPD++ I E+ Q Q + R GG G+G
Sbjct: 66 IKYLRIPDEI-IDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRG 110
>gi|4759160 small nuclear ribonucleoprotein polypeptide D3 [Homo
sapiens]
Length = 126
Score = 40.0 bits (92), Expect = 4e-04
Identities = 17/69 (24%), Positives = 37/69 (53%)
Query: 18 IILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGR 77
I +L +G + T + V G++ + MN +++ +T T R G +L+ +++ G
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 78 NVRYVHIPD 86
+R++ +PD
Sbjct: 67 KIRFLILPD 75
>gi|169881275 phosphorylase kinase, alpha 1 (muscle) isoform 2 [Homo
sapiens]
Length = 1210
Score = 28.1 bits (61), Expect = 1.8
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 14 ENSLIILLQGLQGRVTTVDLRDESVAHGRI--DNVDAFMNIRL-AKVTYTDRWGHQVKLD 70
E S++ L++GL + + ES + + D++ A N + A V D+WGH ++LD
Sbjct: 78 EQSVVKLMRGLLHCMIRQVDKVESFKYSQSTKDSLHAKYNTKTCATVVGDDQWGH-LQLD 136
Query: 71 DLFV--------TGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFG 108
V T + +H D+VN + ++ ++ +FG
Sbjct: 137 ATSVYLLFLAQMTASGLHIIHSLDEVNFIQNLVFYIEAAYKTADFG 182
>gi|169881273 phosphorylase kinase, alpha 1 (muscle) isoform 1 [Homo
sapiens]
Length = 1223
Score = 28.1 bits (61), Expect = 1.8
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 14 ENSLIILLQGLQGRVTTVDLRDESVAHGRI--DNVDAFMNIRL-AKVTYTDRWGHQVKLD 70
E S++ L++GL + + ES + + D++ A N + A V D+WGH ++LD
Sbjct: 78 EQSVVKLMRGLLHCMIRQVDKVESFKYSQSTKDSLHAKYNTKTCATVVGDDQWGH-LQLD 136
Query: 71 DLFV--------TGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFG 108
V T + +H D+VN + ++ ++ +FG
Sbjct: 137 ATSVYLLFLAQMTASGLHIIHSLDEVNFIQNLVFYIEAAYKTADFG 182
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 27.7 bits (60), Expect = 2.3
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 19 ILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIR----LAKVTYTDRWGHQVKLDDLFV 74
++++ L R + DL+D G + DA + + V+Y+D KLD V
Sbjct: 106 LIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEV 165
Query: 75 TGRNVRYV 82
GR +R V
Sbjct: 166 NGRKIRLV 173
>gi|223468597 integrin alpha-V isoform 3 precursor [Homo sapiens]
Length = 1012
Score = 27.7 bits (60), Expect = 2.3
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 4 SHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRW 63
SHS K TIS L +Q LRDES ++ + FM RL T D
Sbjct: 514 SHS-KNMTISRGGL------MQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTT 566
Query: 64 GHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQI 100
G Q L+ F R HI D + + +L++
Sbjct: 567 GLQPILNQ-FTPANISRQAHILLDCGEDNVCKPKLEV 602
>gi|223468595 integrin alpha-V isoform 2 [Homo sapiens]
Length = 1002
Score = 27.7 bits (60), Expect = 2.3
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 4 SHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRW 63
SHS K TIS L +Q LRDES ++ + FM RL T D
Sbjct: 504 SHS-KNMTISRGGL------MQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTT 556
Query: 64 GHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQI 100
G Q L+ F R HI D + + +L++
Sbjct: 557 GLQPILNQ-FTPANISRQAHILLDCGEDNVCKPKLEV 592
>gi|4504763 integrin alpha-V isoform 1 precursor [Homo sapiens]
Length = 1048
Score = 27.7 bits (60), Expect = 2.3
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 4 SHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRW 63
SHS K TIS L +Q LRDES ++ + FM RL T D
Sbjct: 550 SHS-KNMTISRGGL------MQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTT 602
Query: 64 GHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQI 100
G Q L+ F R HI D + + +L++
Sbjct: 603 GLQPILNQ-FTPANISRQAHILLDCGEDNVCKPKLEV 638
>gi|4507131 small nuclear ribonucleoprotein polypeptide F [Homo
sapiens]
Length = 86
Score = 26.6 bits (57), Expect = 5.1
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 21 LQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGRNVR 80
L GL G+ V L+ G + +VD +MN++LA L ++ + NV
Sbjct: 11 LNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVL 70
Query: 81 YV 82
Y+
Sbjct: 71 YI 72
>gi|55953087 G protein-binding protein CRFG [Homo sapiens]
Length = 634
Score = 26.6 bits (57), Expect = 5.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 3 VSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIR 53
+ H +++R E I L L+ V V E HG + ++ F NIR
Sbjct: 226 LDHPLEDRNTIEMQAITALAHLRAAVLYVMDLSEQCGHGLREQLELFQNIR 276
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 25.8 bits (55), Expect = 8.7
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 19 ILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKV----TYTDRWGHQVKLDDLFV 74
++++ L R + DL+D G + DA V +Y+D KLD +
Sbjct: 112 LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEI 171
Query: 75 TGRNVRYV 82
GRN+R +
Sbjct: 172 NGRNIRLI 179
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,254,023
Number of Sequences: 37866
Number of extensions: 151099
Number of successful extensions: 294
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 15
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.