Guide to the Human Genome
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Name: C8orf76 Sequence: fasta or formatted (380aa) NCBI GI: 14249568
Description:

hypothetical protein LOC84933

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         28           2
 C cysteine            3.2         12           1
 D aspartate           3.9         15           2
 E glutamate          10.5         40           2
 F phenylalanine       6.1         23           2
 G glycine             3.4         13           2
 H histidine           2.4          9           1
 I isoleucine          4.2         16           1
 K lysine              7.4         28           2
 L leucine            11.3         43           3
 M methionine          1.6          6           1
 N asparagine          3.9         15           1
 P proline             3.7         14           2
 Q glutamine           5.8         22           2
 R arginine            3.7         14           2
 S serine              8.9         34           2
 T threonine           5.8         22           2
 V valine              3.7         14           1
 W tryptophan          1.3          5           1
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84933 
KIF3A                 0.008   kinesin family member 3A 
TRIM75                0.008   tripartite motif-containing 75 
HOMER3                0.007   Homer, neuronal immediate early gene, 3 isoform 3 [...
HOMER3                0.007   Homer, neuronal immediate early gene, 3 isoform 1 [...
HOMER3                0.007   Homer, neuronal immediate early gene, 3 isoform 1 [...
RANBP2                0.007   RAN binding protein 2 
MYH10                 0.007   myosin, heavy polypeptide 10, non-muscle 
TTC35                 0.007   tetratricopeptide repeat domain 35 
SMYD4                 0.007   SET and MYND domain containing 4 
C1QTNF1               0.007   C1q and tumor necrosis factor related protein 1 isof...
C1QTNF1               0.007   C1q and tumor necrosis factor related protein 1 isof...
MYH7B                 0.007   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
MYH13                 0.007   myosin, heavy polypeptide 13, skeletal muscle [Homo...
SF4                   0.005   splicing factor 4 
LARP4                 0.005   c-Mpl binding protein isoform a 
LARP4                 0.005   c-Mpl binding protein isoform c 
LARP4                 0.005   c-Mpl binding protein isoform b 
ENOSF1                0.005   rTS beta protein isoform rTS gamma 
FAM126A               0.005   family with sequence similarity 126, member A 
CDKL5                 0.005   cyclin-dependent kinase-like 5 
CDKL5                 0.005   cyclin-dependent kinase-like 5 
LRSAM1                0.005   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.005   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.005   leucine rich repeat and sterile alpha motif containi...
TMCC3                 0.005   transmembrane and coiled-coil domain family 3 [Homo...
ANKRD26               0.005   ankyrin repeat domain 26 
ASGR1                 0.005   asialoglycoprotein receptor 1 
CCDC39                0.005   coiled-coil domain containing 39 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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