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Search of human proteins with 14211935
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14211935 testes development-related NYD-SP18 [Homo sapiens]
(344 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14211935 testes development-related NYD-SP18 [Homo sapiens] 703 0.0
gi|193083150 hypothetical protein LOC346653 isoform b [Homo sapi... 275 3e-74
gi|149192824 hypothetical protein LOC346653 isoform a [Homo sapi... 268 7e-72
gi|23957696 hypothetical protein LOC149647 [Homo sapiens] 85 1e-16
gi|222418633 family with sequence similarity 71, member B [Homo ... 84 1e-16
gi|23503301 hypothetical protein LOC196472 [Homo sapiens] 72 7e-13
gi|76253859 hypothetical protein LOC112703 [Homo sapiens] 65 7e-11
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 64 3e-10
gi|89363024 hypothetical protein LOC161142 [Homo sapiens] 59 5e-09
gi|22027646 angiomotin like 1 [Homo sapiens] 34 0.22
gi|4758462 glypican 3 [Homo sapiens] 33 0.28
gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens] 33 0.49
gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens] 33 0.49
gi|119874215 vacuolar protein sorting 13B isoform 4 [Homo sapiens] 33 0.49
gi|35493725 vacuolar protein sorting 13B isoform 3 [Homo sapiens] 33 0.49
gi|239746988 PREDICTED: hypothetical protein XP_002344243 [Homo ... 30 2.4
gi|58535453 CDK5 regulatory subunit associated protein 2 isoform... 30 3.2
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform... 30 3.2
gi|239757718 PREDICTED: hypothetical protein XP_002345530 [Homo ... 30 3.2
gi|239752205 PREDICTED: hypothetical protein XP_002348148 [Homo ... 30 3.2
gi|239746728 PREDICTED: hypothetical protein XP_002343821 [Homo ... 30 3.2
gi|4758844 nucleoporin 155kDa isoform 2 [Homo sapiens] 29 7.0
gi|24430149 nucleoporin 155kDa isoform 1 [Homo sapiens] 29 7.0
gi|27886520 nuclear factor of activated T-cells 5 isoform a [Hom... 29 7.0
gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo... 29 7.0
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho... 29 7.0
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho... 29 7.0
gi|27886524 nuclear factor of activated T-cells 5 isoform a [Hom... 29 7.0
gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens] 29 7.0
>gi|14211935 testes development-related NYD-SP18 [Homo sapiens]
Length = 344
Score = 703 bits (1814), Expect = 0.0
Identities = 344/344 (100%), Positives = 344/344 (100%)
Query: 1 MLSSFPHRKTWRKSKKTVKVTRSYPTFPSLNAWEEFRGLLPVDGEPNPGAGLGVEEGLLC 60
MLSSFPHRKTWRKSKKTVKVTRSYPTFPSLNAWEEFRGLLPVDGEPNPGAGLGVEEGLLC
Sbjct: 1 MLSSFPHRKTWRKSKKTVKVTRSYPTFPSLNAWEEFRGLLPVDGEPNPGAGLGVEEGLLC 60
Query: 61 RVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTMALGVTSSVPCLPLPNILLMA 120
RVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTMALGVTSSVPCLPLPNILLMA
Sbjct: 61 RVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTMALGVTSSVPCLPLPNILLMA 120
Query: 121 SVKWHQGQNQTWNRPSIAPNIFLKRILPLRFVELQVCDHYQRILQLRTVTEKIYYLKLHP 180
SVKWHQGQNQTWNRPSIAPNIFLKRILPLRFVELQVCDHYQRILQLRTVTEKIYYLKLHP
Sbjct: 121 SVKWHQGQNQTWNRPSIAPNIFLKRILPLRFVELQVCDHYQRILQLRTVTEKIYYLKLHP 180
Query: 181 DHPETVFHFWIRLVQILQKGLSITTKDPRILVTHCLVPKNCSSPSGDSKLVQKKLQASQP 240
DHPETVFHFWIRLVQILQKGLSITTKDPRILVTHCLVPKNCSSPSGDSKLVQKKLQASQP
Sbjct: 181 DHPETVFHFWIRLVQILQKGLSITTKDPRILVTHCLVPKNCSSPSGDSKLVQKKLQASQP 240
Query: 241 SESLIQLMTKGESEALSQIFADLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDL 300
SESLIQLMTKGESEALSQIFADLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDL
Sbjct: 241 SESLIQLMTKGESEALSQIFADLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDL 300
Query: 301 RWRASFTYGEWERENPSGLQPLSLLSTLAASTGPQLAPPIGNSI 344
RWRASFTYGEWERENPSGLQPLSLLSTLAASTGPQLAPPIGNSI
Sbjct: 301 RWRASFTYGEWERENPSGLQPLSLLSTLAASTGPQLAPPIGNSI 344
>gi|193083150 hypothetical protein LOC346653 isoform b [Homo
sapiens]
Length = 300
Score = 275 bits (704), Expect = 3e-74
Identities = 151/281 (53%), Positives = 189/281 (67%), Gaps = 4/281 (1%)
Query: 35 EFRGLLPVDGEPNPGAGLGVEEGLLCRVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVY 94
+ RGL P EP PG LGVE GLLC+++HSPEFNLF +SVVFESNFIQV + NWRDV
Sbjct: 3 KIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVC 62
Query: 95 KASNTMALGVTSSVPCLPLPNILLMASVKWHQGQNQTWNRPSIAPNIFLKRILPLRFVEL 154
+ S T+ LGVTSSVP LPLPN+LLMA+V W QG TW+ P AP I L R+LPL++VEL
Sbjct: 63 EGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINLSRLLPLKYVEL 122
Query: 155 QVCDHYQRILQLRTVTEKIYYLKLHPDHPETVFHFWIRLVQILQKGLSITTKDPRILVTH 214
++ D QRIL++RTVTEKIYYLKLH HPE VF FW+RLV+ILQKGLSITTKDPRI TH
Sbjct: 123 RIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSITTKDPRIKFTH 182
Query: 215 CLVPKNCSSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQQNQLSFRSS 274
CLVPK + S ++ L + QPSE L+ L + S + SQ+ Q +
Sbjct: 183 CLVPK-MPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSG--KPQLTADRNND 239
Query: 275 RKVETNKNSSGKDSSREDSIPCTCDLRWRASFTYGEWEREN 315
+E + SS K S S P ++ RA+ ++ WE+E+
Sbjct: 240 TAIEIDNCSSYKIPSPVAS-PINLNIPMRAALSHSLWEQED 279
>gi|149192824 hypothetical protein LOC346653 isoform a [Homo
sapiens]
Length = 309
Score = 268 bits (684), Expect = 7e-72
Identities = 151/290 (52%), Positives = 189/290 (65%), Gaps = 13/290 (4%)
Query: 35 EFRGLLPVDGEPNPGAGLGVEEGLLCRVVHSPEFNLFLDSVVFESNFIQ---------VK 85
+ RGL P EP PG LGVE GLLC+++HSPEFNLF +SVVFESNFIQ V
Sbjct: 3 KIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQVT 62
Query: 86 RGRNWRDVYKASNTMALGVTSSVPCLPLPNILLMASVKWHQGQNQTWNRPSIAPNIFLKR 145
+ NWRDV + S T+ LGVTSSVP LPLPN+LLMA+V W QG TW+ P AP I L R
Sbjct: 63 KPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINLSR 122
Query: 146 ILPLRFVELQVCDHYQRILQLRTVTEKIYYLKLHPDHPETVFHFWIRLVQILQKGLSITT 205
+LPL++VEL++ D QRIL++RTVTEKIYYLKLH HPE VF FW+RLV+ILQKGLSITT
Sbjct: 123 LLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSITT 182
Query: 206 KDPRILVTHCLVPKNCSSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQ 265
KDPRI THCLVPK + S ++ L + QPSE L+ L + S + SQ+
Sbjct: 183 KDPRIKFTHCLVPK-MPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSG--KP 239
Query: 266 QNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDLRWRASFTYGEWEREN 315
Q + +E + SS K S S P ++ RA+ ++ WE+E+
Sbjct: 240 QLTADRNNDTAIEIDNCSSYKIPSPVAS-PINLNIPMRAALSHSLWEQED 288
>gi|23957696 hypothetical protein LOC149647 [Homo sapiens]
Length = 594
Score = 84.7 bits (208), Expect = 1e-16
Identities = 58/209 (27%), Positives = 104/209 (49%), Gaps = 22/209 (10%)
Query: 57 GLLCRVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTMALGVTSSVPCLPLPNI 116
G L R ++ E+++F + +FES+FIQ+ + DV+ + +G+ + P LPLP++
Sbjct: 26 GKLQRQLYKGEYDIFKYAPIFESDFIQITKRGEVIDVHNRVRMVTMGIARTSPILPLPDV 85
Query: 117 LLMA----SVKWHQGQNQTWNRP--SIAPNIFLKRILPLRFVELQVCDHYQRILQLRTVT 170
+L+A + + G Q R A N+ L R+LPLRFV + V DH ++ L+L+ T
Sbjct: 86 MLLARPATGCEEYAGHGQATKRKKRKAAKNLELTRLLPLRFVRISVQDHEKQQLRLKFAT 145
Query: 171 EKIYYLKLHP--DHPETVFHFWIRLVQILQKGLSITTKDPRILVTHCLVPKNCSSPSGDS 228
+ YL+L P D + +F +W +L+ +L+ + + C P+ D
Sbjct: 146 GRSCYLQLCPALDTRDDLFAYWEKLIYLLRPPMESNS-------------STCGIPAED- 191
Query: 229 KLVQKKLQASQPSESLIQLMTKGESEALS 257
+ Q + S + L KG+ + +S
Sbjct: 192 MMWMPVFQEDRRSLGAVNLQGKGDQDQVS 220
>gi|222418633 family with sequence similarity 71, member B [Homo
sapiens]
Length = 605
Score = 84.3 bits (207), Expect = 1e-16
Identities = 48/155 (30%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 67 EFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTMALGVTSSVPCLPLPNILLMAS----- 121
E+N+F + +FESNFIQ+ + DV+ + +G+ + P LPLP+++++A
Sbjct: 37 EYNIFKYAPMFESNFIQINKKGEVIDVHNRVRMVTVGIVCTSPILPLPDVMVLAQPTKIC 96
Query: 122 ---VKWHQGQNQTWNRPSIAPNIFLKRILPLRFVELQVCDHYQRILQLRTVTEKIYYLKL 178
V+W + RP + L R+LPL+FV++ + DH ++ L+L+ T + +YL+L
Sbjct: 97 EQHVRWGRFAKGRGRRP--VKTLELTRLLPLKFVKISIHDHEKQQLRLKLATGRTFYLQL 154
Query: 179 HP--DHPETVFHFWIRLVQILQKGLSITTKDPRIL 211
P D E +F +W +LV +L+ + P +L
Sbjct: 155 CPSSDTREDLFCYWEKLVYLLRPPVESYCSTPTLL 189
>gi|23503301 hypothetical protein LOC196472 [Homo sapiens]
Length = 241
Score = 72.0 bits (175), Expect = 7e-13
Identities = 50/182 (27%), Positives = 93/182 (51%), Gaps = 12/182 (6%)
Query: 45 EPNPGAGL-GVEEGLLCRVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTMALG 103
+ +P G+ G L R ++ E+ +F + +FES+FIQ+ + DV+ + + +G
Sbjct: 13 QSSPAMGMFNTSMGKLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVIDVHNRARMVTMG 72
Query: 104 VTSSVPCLPLPNILLMA-------SVKWHQGQNQTWNRPSIAPNIFLKRILPLRFVELQV 156
+ + PCL LP+++L+A + + + + P A + L R+LPL FV++ +
Sbjct: 73 IVRTSPCLTLPDVMLLARPAAVCDNARCGPATQKRESPP--AEILELTRLLPLMFVKITI 130
Query: 157 CDHYQRILQLRTVTEKIYYLKLHP--DHPETVFHFWIRLVQILQKGLSITTKDPRILVTH 214
+ ++ L L+ T + +YL+L P D E +F W LV IL+ + + IL +
Sbjct: 131 HNSVKKQLHLKLATGRSFYLQLCPPSDASEDLFVHWENLVYILRPPVEAYSDTRAILAGN 190
Query: 215 CL 216
L
Sbjct: 191 TL 192
>gi|76253859 hypothetical protein LOC112703 [Homo sapiens]
Length = 231
Score = 65.5 bits (158), Expect = 7e-11
Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 23/160 (14%)
Query: 44 GEPNPGAGLGVEEGL---LCRVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTM 100
GE PG G L R + S EF+ F D +FESNF+QV R + + +N +
Sbjct: 78 GEVEPGGMAASPTGRPRRLQRYLQSGEFDQFRDFPIFESNFVQVTR------LGEVANEV 131
Query: 101 ALGVTSSVPCLPLPNILLMASVKWHQGQNQTWNRPSIAPNIFLKRILPLRFVELQVCDHY 160
+GV +S P L LP++LL+A G Q + + PL+FV+L V D
Sbjct: 132 TMGVAASSPALELPDLLLLAGPAKENGHLQLFG------------LFPLKFVQLFVHDKS 179
Query: 161 QRILQLRTVTEKIYYLKLHP--DHPETVFHFWIRLVQILQ 198
+ L+++ T + +YL+L + F W+RL+ L+
Sbjct: 180 RCQLEVKLNTSRTFYLQLRAPLKTRDREFGQWVRLLYRLR 219
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 63.5 bits (153), Expect = 3e-10
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 37 RGLLPVDGEPNPGAGLGVEEGLLCRVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVYKA 96
R L P+ G P LG L + + E+ +FESNF+QV V
Sbjct: 8 RCLEPLQGTPKWVPVLGE----LQKTLQKGEYLPLRPLPMFESNFVQVTHQGGPVFVNHR 63
Query: 97 SNTMALGVTSSVPCLPLPNILLMASVKWHQGQNQTWNRPSIAPNIFLKRILPLRFVELQV 156
+N +A+GV +S+P L LP+ILL+ + + L R++PL V L V
Sbjct: 64 TNRLAMGVAASLPGLVLPDILLIGQPAEDRD----------CSGLVLTRMIPLDLVHLCV 113
Query: 157 CDHYQRILQLRTVTEKIYYLKLHPDHPET--VFHFWIRLVQILQK 199
D L+LR V+ + YYL L E +FH W+RL+ +LQ+
Sbjct: 114 HDLSAWRLKLRLVSGRQYYLALDAPDNEVGFLFHCWVRLINLLQE 158
>gi|89363024 hypothetical protein LOC161142 [Homo sapiens]
Length = 422
Score = 59.3 bits (142), Expect = 5e-09
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Query: 67 EFNLFLDSVVFESNFIQVKRGRNWRDVYKASNTMALGVTSSVPCLPLPNILLMASV-KWH 125
E+ F+ + ESNFIQV R ++ +N + +G+ S +PN++L+A +
Sbjct: 37 EYAPFVSPPMLESNFIQVNRRGESIYLHNRANWVTVGICFSSSTHKIPNVMLLAHLTPGA 96
Query: 126 QGQNQTWNRPSI----APNIFLKRILPLRFVELQVCDHYQRILQLRTVTEKIYYLKLHPD 181
Q +T + + A + L R LPL+FV L V D L+++ V+ + YYL+L
Sbjct: 97 QKDTETLFKSLLTSPPAEKLVLTRFLPLQFVTLSVHDAENMSLKVKLVSGRAYYLQLCTS 156
Query: 182 --HPETVFHFWIRLVQILQK 199
+T+F W+ L+ +L +
Sbjct: 157 AYKQDTLFSQWVALISLLNQ 176
>gi|22027646 angiomotin like 1 [Homo sapiens]
Length = 956
Score = 33.9 bits (76), Expect = 0.22
Identities = 17/67 (25%), Positives = 37/67 (55%)
Query: 202 SITTKDPRILVTHCLVPKNCSSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFA 261
++T +DP+++ D+ +++K+++++QP ++ +L T E++A SQ F
Sbjct: 143 NLTQEDPQMVYQSARQEPQGQEHQVDNTVMEKQVRSTQPQQNNEELPTYEEAKAQSQFFR 202
Query: 262 DLHQQNQ 268
QQ Q
Sbjct: 203 GQQQQQQ 209
>gi|4758462 glypican 3 [Homo sapiens]
Length = 580
Score = 33.5 bits (75), Expect = 0.28
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 179 HPDHPETVFHFWIRLVQILQKGLSITTKDPRILVTHCLVPKNCSSPSGDSKLVQKKLQAS 238
H +H ET+ L+Q L+ +S + P + +H V +N + +LV++ Q +
Sbjct: 377 HVEHEETLSSRRRELIQKLKSFISFYSALPGYICSHSPVAENDTLCWNGQELVERYSQKA 436
Query: 239 -----QPSESLIQLMTKGESEALSQIFADLHQQNQL----SFRSSRKVETNKNSSGKDS 288
+ +L +L KG +SQI L NQL S R ++ N + G +S
Sbjct: 437 ARNGMKNQFNLHELKMKGPEPVVSQIIDKLKHINQLLRTMSMPKGRVLDKNLDEEGFES 495
>gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens]
Length = 4022
Score = 32.7 bits (73), Expect = 0.49
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 262 DLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDLRWRASFTYGEWERENPSGLQP 321
DL + ++F +N+SGK +D + C R R FTY + PS ++
Sbjct: 196 DLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYENLNSKMPSVIKI 255
Query: 322 LSLLSTLAASTGPQLAP 338
+L+ +L S Q P
Sbjct: 256 HTLVESLKLSITDQQLP 272
>gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens]
Length = 3997
Score = 32.7 bits (73), Expect = 0.49
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 262 DLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDLRWRASFTYGEWERENPSGLQP 321
DL + ++F +N+SGK +D + C R R FTY + PS ++
Sbjct: 196 DLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYENLNSKMPSVIKI 255
Query: 322 LSLLSTLAASTGPQLAP 338
+L+ +L S Q P
Sbjct: 256 HTLVESLKLSITDQQLP 272
>gi|119874215 vacuolar protein sorting 13B isoform 4 [Homo sapiens]
Length = 415
Score = 32.7 bits (73), Expect = 0.49
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 262 DLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDLRWRASFTYGEWERENPSGLQP 321
DL + ++F +N+SGK +D + C R R FTY + PS ++
Sbjct: 196 DLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYENLNSKMPSVIKI 255
Query: 322 LSLLSTLAASTGPQLAP 338
+L+ +L S Q P
Sbjct: 256 HTLVESLKLSITDQQLP 272
>gi|35493725 vacuolar protein sorting 13B isoform 3 [Homo sapiens]
Length = 863
Score = 32.7 bits (73), Expect = 0.49
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 262 DLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDLRWRASFTYGEWERENPSGLQP 321
DL + ++F +N+SGK +D + C R R FTY + PS ++
Sbjct: 196 DLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYENLNSKMPSVIKI 255
Query: 322 LSLLSTLAASTGPQLAP 338
+L+ +L S Q P
Sbjct: 256 HTLVESLKLSITDQQLP 272
>gi|239746988 PREDICTED: hypothetical protein XP_002344243 [Homo
sapiens]
Length = 212
Score = 30.4 bits (67), Expect = 2.4
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 233 KKLQASQPSESLIQLMTKGESEALSQIFADLHQQNQLSFRSSRKVETNKNSSGKDSSRED 292
K + + +P+ LIQ++ ++ LS H+ LS S RK + ++++ SR
Sbjct: 127 KHVHSWEPNSKLIQVVL--QTHLLSGSHVPPHRIMGLSCGSHRK-DRGESTANAPPSRSP 183
Query: 293 SIPCTCDLRWRASFTYGEWERENPSGLQP 321
S+P DL + E + +PSGL P
Sbjct: 184 SLPSCMDLLLGNADILCEASQNSPSGLVP 212
>gi|58535453 CDK5 regulatory subunit associated protein 2 isoform b
[Homo sapiens]
Length = 1814
Score = 30.0 bits (66), Expect = 3.2
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 23/106 (21%)
Query: 194 VQILQKGLSITTKDPRILVTHCLVPKNCSS--PSGDSKLVQKKLQASQPSESLIQLMTK- 250
++++Q+ + + L + L+ + CSS P G + K+ + S E LIQ++ K
Sbjct: 501 LEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIFSKEKKQSSDYEELIQVLKKE 560
Query: 251 -----------GESEALSQIFADLH---------QQNQLSFRSSRK 276
ES++++ + A+L+ +Q+ LS+++ RK
Sbjct: 561 QDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLSYQNLRK 606
>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
[Homo sapiens]
Length = 1893
Score = 30.0 bits (66), Expect = 3.2
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 23/106 (21%)
Query: 194 VQILQKGLSITTKDPRILVTHCLVPKNCSS--PSGDSKLVQKKLQASQPSESLIQLMTK- 250
++++Q+ + + L + L+ + CSS P G + K+ + S E LIQ++ K
Sbjct: 501 LEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIFSKEKKQSSDYEELIQVLKKE 560
Query: 251 -----------GESEALSQIFADLH---------QQNQLSFRSSRK 276
ES++++ + A+L+ +Q+ LS+++ RK
Sbjct: 561 QDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLSYQNLRK 606
>gi|239757718 PREDICTED: hypothetical protein XP_002345530 [Homo
sapiens]
Length = 242
Score = 30.0 bits (66), Expect = 3.2
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 105 TSSVPC---LPLPNILLMASVKWHQGQNQTWNRPSIAPN 140
T+++PC +PLP+ L + +G++Q W RP P+
Sbjct: 85 TTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRTGPS 123
>gi|239752205 PREDICTED: hypothetical protein XP_002348148 [Homo
sapiens]
Length = 242
Score = 30.0 bits (66), Expect = 3.2
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 105 TSSVPC---LPLPNILLMASVKWHQGQNQTWNRPSIAPN 140
T+++PC +PLP+ L + +G++Q W RP P+
Sbjct: 85 TTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRTGPS 123
>gi|239746728 PREDICTED: hypothetical protein XP_002343821 [Homo
sapiens]
Length = 242
Score = 30.0 bits (66), Expect = 3.2
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 105 TSSVPC---LPLPNILLMASVKWHQGQNQTWNRPSIAPN 140
T+++PC +PLP+ L + +G++Q W RP P+
Sbjct: 85 TTTIPCTYPVPLPSFLTCTFSEPQRGKDQKWLRPRTGPS 123
>gi|4758844 nucleoporin 155kDa isoform 2 [Homo sapiens]
Length = 1332
Score = 28.9 bits (63), Expect = 7.0
Identities = 40/153 (26%), Positives = 58/153 (37%), Gaps = 19/153 (12%)
Query: 192 RLVQILQKGLSITTKDPRILVTHCLVPKNCSSPSGDSKLVQKKLQASQPSESLIQLMTKG 251
+++ L K T P ++ H L PK S L+ KL+ L+ G
Sbjct: 412 KIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGG 471
Query: 252 ESEALSQIFADLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDLRWRASFTY-GE 310
+ E + + F LHQ++Q S RE S T RA F Y GE
Sbjct: 472 DGEEIERFF-KLHQEDQACATCLILA-----CSTAACDREVSAWAT-----RAFFRYGGE 520
Query: 311 WERENPSGLQPLSLLSTLAASTGPQLAPPIGNS 343
+ P+ L P S + GP L P+ +S
Sbjct: 521 AQMRFPTTLPPPS-------NVGPILGSPVYSS 546
>gi|24430149 nucleoporin 155kDa isoform 1 [Homo sapiens]
Length = 1391
Score = 28.9 bits (63), Expect = 7.0
Identities = 40/153 (26%), Positives = 58/153 (37%), Gaps = 19/153 (12%)
Query: 192 RLVQILQKGLSITTKDPRILVTHCLVPKNCSSPSGDSKLVQKKLQASQPSESLIQLMTKG 251
+++ L K T P ++ H L PK S L+ KL+ L+ G
Sbjct: 471 KIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGG 530
Query: 252 ESEALSQIFADLHQQNQLSFRSSRKVETNKNSSGKDSSREDSIPCTCDLRWRASFTY-GE 310
+ E + + F LHQ++Q S RE S T RA F Y GE
Sbjct: 531 DGEEIERFF-KLHQEDQACATCLILA-----CSTAACDREVSAWAT-----RAFFRYGGE 579
Query: 311 WERENPSGLQPLSLLSTLAASTGPQLAPPIGNS 343
+ P+ L P S + GP L P+ +S
Sbjct: 580 AQMRFPTTLPPPS-------NVGPILGSPVYSS 605
>gi|27886520 nuclear factor of activated T-cells 5 isoform a [Homo
sapiens]
Length = 1455
Score = 28.9 bits (63), Expect = 7.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 222 SSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQQ 266
S SG LVQ+ L+A Q S++ G Q+ AD+ QQ
Sbjct: 713 SGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQLSADIFQQ 757
>gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo
sapiens]
Length = 1531
Score = 28.9 bits (63), Expect = 7.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 222 SSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQQ 266
S SG LVQ+ L+A Q S++ G Q+ AD+ QQ
Sbjct: 789 SGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQLSADIFQQ 833
>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
sapiens]
Length = 1548
Score = 28.9 bits (63), Expect = 7.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 222 SSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQQ 266
S SG LVQ+ L+A Q S++ G Q+ AD+ QQ
Sbjct: 806 SGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQLSADIFQQ 850
>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
sapiens]
Length = 1549
Score = 28.9 bits (63), Expect = 7.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 222 SSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQQ 266
S SG LVQ+ L+A Q S++ G Q+ AD+ QQ
Sbjct: 807 SGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQLSADIFQQ 851
>gi|27886524 nuclear factor of activated T-cells 5 isoform a [Homo
sapiens]
Length = 1455
Score = 28.9 bits (63), Expect = 7.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 222 SSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQQ 266
S SG LVQ+ L+A Q S++ G Q+ AD+ QQ
Sbjct: 713 SGSSGSVDLVQQVLEAQQQLSSVLFSAPDGNENVQEQLSADIFQQ 757
>gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens]
Length = 198
Score = 28.9 bits (63), Expect = 7.0
Identities = 21/88 (23%), Positives = 37/88 (42%)
Query: 216 LVPKNCSSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQQNQLSFRSSR 275
L+ CSS S + ++ LQA L+ +EA+ +F + QN + +
Sbjct: 42 LLDVTCSSLSVTQEEAEELLQALHRLTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKI 101
Query: 276 KVETNKNSSGKDSSREDSIPCTCDLRWR 303
+E + + + S+P DL WR
Sbjct: 102 ILEHVSTWRTEAQANQISLPRLVDLDWR 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,035,389
Number of Sequences: 37866
Number of extensions: 622904
Number of successful extensions: 1609
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1576
Number of HSP's gapped (non-prelim): 31
length of query: 344
length of database: 18,247,518
effective HSP length: 103
effective length of query: 241
effective length of database: 14,347,320
effective search space: 3457704120
effective search space used: 3457704120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.