Search of human proteins with 9506437

Search of human proteins with 9506437

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|9506437 chromosome 21 open reading frame 45 [Homo sapiens]
         (233 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|9506437 chromosome 21 open reading frame 45 [Homo sapiens]         472   e-133
gi|24307929 Opa interacting protein 5 [Homo sapiens]                   41   8e-04
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li...    34   0.094
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li...    34   0.094
gi|206597487 solute carrier family 5 (sodium/glucose cotransport...    33   0.16 
gi|206597483 solute carrier family 5 (sodium/glucose cotransport...    33   0.16 
gi|219879806 TRAF-type zinc finger domain containing 1 [Homo sap...    31   0.79 
gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens]    31   0.79 
gi|38348729 hypothetical protein LOC203238 [Homo sapiens]              31   0.79 
gi|4826776 Janus kinase 2 [Homo sapiens]                               30   1.4  
gi|55770834 centromere protein F [Homo sapiens]                        30   1.4  
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]    30   1.8  
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi...    30   1.8  
gi|54112385 four and a half LIM domains 3 [Homo sapiens]               30   1.8  
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ...    30   2.3  
gi|63025206 hypothetical protein LOC221061 [Homo sapiens]              30   2.3  
gi|10863889 squamous cell carcinoma antigen recognized by T cell...    29   3.0  
gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens]             29   3.9  
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]              29   3.9  
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa...    29   3.9  
gi|27262622 neuron navigator 1 [Homo sapiens]                          29   3.9  
gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]    28   5.2  
gi|4505809 catalytic phosphatidylinositol 4-kinase beta [Homo sa...    28   5.2  
gi|156564372 hypothetical protein LOC113828 [Homo sapiens]             28   5.2  
gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo ...    28   5.2  
gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo ...    28   5.2  
gi|239752551 PREDICTED: hypothetical protein [Homo sapiens]            28   8.8  
gi|93141003 testican 3 isoform 1 [Homo sapiens]                        28   8.8  
gi|93141001 testican 3 isoform 2 [Homo sapiens]                        28   8.8  
gi|7662330 actin binding LIM protein family, member 3 [Homo sapi...    28   8.8  

>gi|9506437 chromosome 21 open reading frame 45 [Homo sapiens]
          Length = 233

 Score =  472 bits (1215), Expect = e-133
 Identities = 233/233 (100%), Positives = 233/233 (100%)

Query: 1   MAGVRSLRCSRGCAGGCECGDKGKCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSEDAS 60
           MAGVRSLRCSRGCAGGCECGDKGKCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSEDAS
Sbjct: 1   MAGVRSLRCSRGCAGGCECGDKGKCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSEDAS 60

Query: 61  VADMERAQLEEEAAAAEERPLVFLCSGCRRPLGDSLSWVASQEDTNCILLRCVSCNVSVD 120
           VADMERAQLEEEAAAAEERPLVFLCSGCRRPLGDSLSWVASQEDTNCILLRCVSCNVSVD
Sbjct: 61  VADMERAQLEEEAAAAEERPLVFLCSGCRRPLGDSLSWVASQEDTNCILLRCVSCNVSVD 120

Query: 121 KEQKLSKREKENGCVLETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSVEAIESYVLGS 180
           KEQKLSKREKENGCVLETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSVEAIESYVLGS
Sbjct: 121 KEQKLSKREKENGCVLETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSVEAIESYVLGS 180

Query: 181 SEKQIVSEDKELFNLESRVEIEKSLTQMEDVLKALQMKLWEAESKLSFATCKS 233
           SEKQIVSEDKELFNLESRVEIEKSLTQMEDVLKALQMKLWEAESKLSFATCKS
Sbjct: 181 SEKQIVSEDKELFNLESRVEIEKSLTQMEDVLKALQMKLWEAESKLSFATCKS 233


>gi|24307929 Opa interacting protein 5 [Homo sapiens]
          Length = 229

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 78  ERPLVFLCSGCRRPLGDS--LSWVASQEDTNCILLRCVSCNVSVDKEQKLSKREKENGCV 135
           ER  VF C+ C   L DS  L+W  S+     ++   V+ NV ++    +       G  
Sbjct: 73  ERCAVFQCAQCHAVLADSVHLAWDLSRS-LGAVVFSRVTNNVVLEAPFLVGIEGSLKGST 131

Query: 136 LETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSVEAIESYVLGSSEKQIVSEDKELFNL 195
              L C  C + +G+    T   L   R  FCLS + +  Y+L  ++  + + + ++ N+
Sbjct: 132 YNLLFCGSCGIPVGFHLYSTHAALAALRGHFCLSSDKMVCYLL-KTKAIVNASEMDIQNV 190

Query: 196 ---ESRVEIEKSLTQMEDVLKALQMKLWE 221
              E   E+++ +    + LK+L   L E
Sbjct: 191 PLSEKIAELKEKIVLTHNRLKSLMKILSE 219


>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
           [Homo sapiens]
          Length = 899

 Score = 34.3 bits (77), Expect = 0.094
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 182 EKQIVSEDKELFNLESRVEIEKSLTQMEDVLKALQMKLWEAESKL 226
           EK++  ++KEL   E  +  +K L + E+ ++  + K+WE E K+
Sbjct: 320 EKRLREQEKELREQEKELREQKELREQEEQMQEQEEKMWEQEEKM 364


>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
           [Homo sapiens]
          Length = 828

 Score = 34.3 bits (77), Expect = 0.094
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 182 EKQIVSEDKELFNLESRVEIEKSLTQMEDVLKALQMKLWEAESKL 226
           EK++  ++KEL   E  +  +K L + E+ ++  + K+WE E K+
Sbjct: 282 EKRLREQEKELREQEKELREQKKLREQEEQMQEQEEKMWEQEEKM 326


>gi|206597487 solute carrier family 5 (sodium/glucose
           cotransporter), member 9 isoform 1 [Homo sapiens]
          Length = 706

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 14  AGGCECGDKGKCSDSSLLGKRLSEDSSRH--QLLQKWASMWSSMSEDASVADMERAQLEE 71
           AG C  G  G  +++S LG+   E  SR   +LL  W    S   E A ++  E+A LE+
Sbjct: 616 AGECPAG--GGAAENSSLGQEQPEAPSRSWGKLLWSWFCGLSGTPEQA-LSPAEKAALEQ 672

Query: 72  EAAAAEERPL 81
           +  + EE PL
Sbjct: 673 KLTSIEEEPL 682


>gi|206597483 solute carrier family 5 (sodium/glucose
           cotransporter), member 9 isoform 2 [Homo sapiens]
          Length = 681

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 14  AGGCECGDKGKCSDSSLLGKRLSEDSSRH--QLLQKWASMWSSMSEDASVADMERAQLEE 71
           AG C  G  G  +++S LG+   E  SR   +LL  W    S   E A ++  E+A LE+
Sbjct: 591 AGECPAG--GGAAENSSLGQEQPEAPSRSWGKLLWSWFCGLSGTPEQA-LSPAEKAALEQ 647

Query: 72  EAAAAEERPL 81
           +  + EE PL
Sbjct: 648 KLTSIEEEPL 657


>gi|219879806 TRAF-type zinc finger domain containing 1 [Homo
           sapiens]
          Length = 582

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 84  LCSGCRRPLGDSLSWVASQEDTNCILLRC-VSCNVSVDKEQKLSKREKENGCVLETLCCA 142
           +C  C+ P      +  S  +T+     C V+C  +   E++L K+ +E  C L    C 
Sbjct: 38  MCPTCKEP------FPKSDMETHMAAEHCQVTCKCNKKLEKRLLKKHEETECPLRLAVCQ 91

Query: 143 GCSLNL 148
            C L L
Sbjct: 92  HCDLEL 97


>gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens]
          Length = 582

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 84  LCSGCRRPLGDSLSWVASQEDTNCILLRC-VSCNVSVDKEQKLSKREKENGCVLETLCCA 142
           +C  C+ P      +  S  +T+     C V+C  +   E++L K+ +E  C L    C 
Sbjct: 38  MCPTCKEP------FPKSDMETHMAAEHCQVTCKCNKKLEKRLLKKHEETECPLRLAVCQ 91

Query: 143 GCSLNL 148
            C L L
Sbjct: 92  HCDLEL 97


>gi|38348729 hypothetical protein LOC203238 [Homo sapiens]
          Length = 1326

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 157  KNLDYKRDLFCLSVEAIESYVLGSSEKQIVSEDKELFNLESRV-EIEKSLTQMEDVLKAL 215
            + L+YK +L   S EA ++  LG + K +     EL   +  + ++ + LTQ+E   + L
Sbjct: 1064 QELNYKLELHS-SEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRL 1122

Query: 216  QMKLWEAESKLSFA 229
            +  + +AES L  A
Sbjct: 1123 EENIHDAESALRMA 1136


>gi|4826776 Janus kinase 2 [Homo sapiens]
          Length = 1132

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 22/182 (12%)

Query: 53  SSMSEDASVADMERAQLEEEAAAAEER-PLVFLCSGCRRPLGDSLSWVASQEDTNCILLR 111
           S+ S   ++   +   LE E ++  E    V L  G  R   D+  ++  +     +L  
Sbjct: 336 SNESRVVTIHKQDGKNLEIELSSLREALSFVSLIDGYYRLTADAHHYLCKEVAPPAVLEN 395

Query: 112 CVS-CNVSVDKEQKLSKREKENGCVLETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSV 170
             S C+  +  +  +SK +K           AG    L YV RC+PK  D+ +     +V
Sbjct: 396 IQSNCHGPISMDFAISKLKK-----------AGNQTGL-YVLRCSPK--DFNKYFLTFAV 441

Query: 171 EAIESYVLGSSEKQIVSEDKELFNLESRVEIEKSLTQMEDVLKALQMKLWEAESKL-SFA 229
           E     V+      I   + E +NL      +K+ + ++D+L   QM+   +++ +  F 
Sbjct: 442 E--RENVIEYKHCLITKNENEEYNLSG---TKKNFSSLKDLLNCYQMETVRSDNIIFQFT 496

Query: 230 TC 231
            C
Sbjct: 497 KC 498


>gi|55770834 centromere protein F [Homo sapiens]
          Length = 3114

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 120  DKEQKLSKREKENGCVLETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSVEAIESYVLG 179
            +KE KL + EKE  C+   L      L    +     + +   +D     ++A E Y+ G
Sbjct: 1219 NKELKLQESEKEKECLQHELQTIRGDLETSNLQDMQSQEISGLKD---CEIDAEEKYISG 1275

Query: 180  SSEKQIVSEDKELFNLESRVEIEKSLTQMEDVLKALQMKLWEAESKLS 227
              E      D        +  + K L ++E + + LQ + +E  ++L+
Sbjct: 1276 PHELSTSQNDNAHLQCSLQTTMNK-LNELEKICEILQAEKYELVTELN 1322


>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
          Length = 1684

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 121 KEQKLSKREKENGCVLETLCCAGCSLNLGYVYRCTPKNLDYK--RDLFCLSVEAIESYVL 178
           K  +L   ++E GCV+E L      LN  + Y     N + +  ++     +  +    L
Sbjct: 386 KINELLLAKEEQGCVIEKLKSELAGLNKQFCYTVEQHNREVQSLKEQHQKEISELNETFL 445

Query: 179 GSSEKQIVSEDKELFNLESRVEIEKSLTQ--------MEDVLKALQMKLWEAESKLS 227
             SEK+ ++   E+  L+ + E  +   Q        + ++++ LQ +L E+  K+S
Sbjct: 446 SDSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKIS 502


>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
           sapiens]
          Length = 455

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 26/121 (21%)

Query: 63  DMERAQLEEEAAAAEERPL--VFLCSGCRRPLGD-SLSWVASQEDTNC------------ 107
           D +  + E  +  A E  L     CS CR+ +G   +S      DT C            
Sbjct: 78  DTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWS 137

Query: 108 -ILLRCVSCNVSVDKEQKLSKREKEN-------GCVL---ETLCCAGCSLNLGYVYRCTP 156
             L +C +C++ ++    LS +EK+N       G  L   E + C+ C  +L     C P
Sbjct: 138 ENLFQCFNCSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLP 197

Query: 157 K 157
           +
Sbjct: 198 Q 198


>gi|54112385 four and a half LIM domains 3 [Homo sapiens]
          Length = 280

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 83  FLCSGCRRPLGDSLSWVASQEDTNCI-------LLRCVSCNVSVDKEQKLSKREKENGCV 135
           FLCSGC +PLG S S+V  +    C+         RC  C+ ++ +        ++    
Sbjct: 127 FLCSGCEQPLG-SRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQG---GVTYRDQPWH 182

Query: 136 LETLCCAGCSLNL 148
            E L C GC   L
Sbjct: 183 RECLVCTGCQTPL 195


>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
            sapiens]
          Length = 1983

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 182  EKQIVSEDKELFNLESRVEIEKSL-TQMEDVLKALQMKLWEAESKL 226
            E+++  +D EL  L  RVE E+ L  QM+  +K LQ +  E E +L
Sbjct: 1126 EEKLKKKDSELSQLSLRVEDEQLLGAQMQKKIKELQARAEELEEEL 1171


>gi|63025206 hypothetical protein LOC221061 [Homo sapiens]
          Length = 890

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 28  SSLLGKRLSEDSSRHQLLQKWASMWSSMSEDASVADMERAQLEEEAAAAEERPLVFLCSG 87
           S  + ++  +D+   +   + ASM  S+S  AS+ D   AQ+  E     E+ L+ L  G
Sbjct: 640 SQAISQQHLQDAGTREWSPQNASMSESLSIPASLNDAALAQMNSEVQLLTEKALMELGGG 699

Query: 88  CRRPLGDSLSWVAS 101
             +PL    +W  S
Sbjct: 700 --KPLPHPRAWFVS 711


>gi|10863889 squamous cell carcinoma antigen recognized by T cells 1
           [Homo sapiens]
          Length = 800

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 65  ERAQLEEEAAAAEERPLVFLCSGCRRPLGDSLSWVASQEDTNCILLRCVSCNVSVDKEQK 124
           +R +L E+ AAA+E+ L+    G  + LG+   W+   +DT   + R        D  +K
Sbjct: 163 QREELREKLAAAKEKRLLNQKLGKIKTLGEDDPWL---DDTAAWIERSRQLQKEKDLAEK 219

Query: 125 LSKREKENGCVLETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSVE-AIESYVLGSSEK 183
            +K  +E           G S  +   +    ++L   RDL  L+VE AI+S+  G +  
Sbjct: 220 RAKLLEEMDQEF------GVSTLVEEEFGQRRQDLYSARDLQGLTVEHAIDSFREGET-M 272

Query: 184 QIVSEDKELFNLESRVEIEKSLTQMEDVLKALQMK 218
            +  +DK +   E  V +  +L   E   K ++++
Sbjct: 273 ILTLKDKGVLQEEEDVLVNVNLVDKERAEKNVELR 307


>gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens]
          Length = 617

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 83  FLCSGCRRPLGDSLSWVASQED------TNCILLRCVSCNVSVDKEQKLSKREKENGCVL 136
           F+C+ C++P G+SL  +   E        N    +C  C+  V+   K     +  G   
Sbjct: 524 FVCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFI---EALGHTW 580

Query: 137 ETLC--CAGCSLNL 148
              C  CA C +NL
Sbjct: 581 HDTCFICAVCHVNL 594


>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
          Length = 727

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 83  FLCSGCRRPLGDSLSWVASQED------TNCILLRCVSCNVSVDKEQKLSKREKENGCVL 136
           F+C+ C++P G+SL  +   E        N    +C  C+  V+   K     +  G   
Sbjct: 634 FVCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFI---EALGHTW 690

Query: 137 ETLC--CAGCSLNL 148
              C  CA C +NL
Sbjct: 691 HDTCFICAVCHVNL 704


>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
            sapiens]
          Length = 1690

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 24   KCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSEDASVADMERAQLE-------EEAAAA 76
            K  + + L K+L+++  R +  +K A+    + ++++    E+  L+         A  +
Sbjct: 1544 KSKELNKLAKKLAKEEERKKKKEKAAAAKVELVKESTEKKREKKVLDIPSKYDWSGAEES 1603

Query: 77   EERPLVFLCSGCRRPLGDSLSWVASQEDTNC 107
            ++   V     C+RP  D + WV  Q D  C
Sbjct: 1604 DDENAVCAAQNCQRPCKDKVDWV--QCDGGC 1632


>gi|27262622 neuron navigator 1 [Homo sapiens]
          Length = 1874

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 23  GKCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSEDASVADMERAQLEEE--------AA 74
           G  SDS L+GK ++ED        + +S+ S +S+ +     E                A
Sbjct: 388 GYMSDSDLMGKTMTEDDDITTGWDESSSISSGLSDASDNLSSEEFNASSSLNSLPSTPTA 447

Query: 75  AAEERPLVFLCSGCRRPLGDS-LSWVASQEDTNCILLRCVSCNVSVDKEQKLSKREKENG 133
           +     +V      +R L +S LSW +  E+     L   S ++ ++      +RE+   
Sbjct: 448 SRRNSTIVLRTDSEKRSLAESGLSWFSESEEKAPKKLEYDSGSLKMEPGTSKWRRERPES 507

Query: 134 C 134
           C
Sbjct: 508 C 508


>gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]
          Length = 372

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 84  LCSGCRRPLGDSLSWVASQEDTNCILLRCVSCNVSVDKEQKLSKRE---KENGCVLETLC 140
           +C GC+RP+ D      ++   +   L+C +C  ++        R+   K++   L    
Sbjct: 32  VCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAK 91

Query: 141 CAGC 144
           C+GC
Sbjct: 92  CSGC 95


>gi|4505809 catalytic phosphatidylinositol 4-kinase beta [Homo
           sapiens]
          Length = 828

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 18/92 (19%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 125 LSKREKENGCVLETLCCAGCSLNLGYVYRCTPKNLDYKRDLFCLSVEAIESYVLGSSEKQ 184
           L  +++ NG +L         ++ G++   +P+NL ++   F L+ E ++  V+G  +  
Sbjct: 679 LQVKDRHNGNILLDAEGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVD--VMGGLDGD 736

Query: 185 IVSEDKELFNLESRVEIEKSLTQMEDVLKALQ 216
           + +  K L  L+  +   K + ++  +++ +Q
Sbjct: 737 MFNYYKMLM-LQGLIAARKHMDKVVQIVEIMQ 767


>gi|156564372 hypothetical protein LOC113828 [Homo sapiens]
          Length = 500

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 80  PLVFLCSGCRRPLGDSLSWVASQE 103
           P   L SGCR P G+ + W A Q+
Sbjct: 325 PKYALVSGCRHPPGEMMRWAARQQ 348


>gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo
           sapiens]
          Length = 833

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 10  SRGCAGGCECGDKGKCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSE---DASVADMER 66
           SRG   G   GD G+   +S  G+RL   S+R + L      + S S    DAS  D   
Sbjct: 746 SRGKREGSASGDSGQNYSASSKGERL---SARLRALPGTNEPYESSSNKEIDASYVDPLG 802

Query: 67  AQLEEEAAAAEER 79
            Q+E    AA++R
Sbjct: 803 PQIERPKTAAKKR 815


>gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo
           sapiens]
          Length = 824

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 10  SRGCAGGCECGDKGKCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSE---DASVADMER 66
           SRG   G   GD G+   +S  G+RL   S+R + L      + S S    DAS  D   
Sbjct: 737 SRGKREGSASGDSGQNYSASSKGERL---SARLRALPGTNEPYESSSNKEIDASYVDPLG 793

Query: 67  AQLEEEAAAAEER 79
            Q+E    AA++R
Sbjct: 794 PQIERPKTAAKKR 806


>gi|239752551 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 238

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 182 EKQIVSEDKELFNLESRVEIEKSLTQMEDVLKALQMKLWEAESKL 226
           EK+   E+K     E   E E+ + + E+ ++  + K+WE E K+
Sbjct: 111 EKKKTQEEKMQEQEEKMQEQEEMMWEQEEKMQEQEEKMWEQEEKM 155


>gi|93141003 testican 3 isoform 1 [Homo sapiens]
          Length = 433

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 13  CAGGCECGDKGKCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSEDASVADMERAQLEEE 72
           C G C C    K + +S   KR   D    ++  +    + ++ E  S     +  L  E
Sbjct: 176 CEGHCPC-PSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPE 234

Query: 73  AAAAEERPLVFLCSGCRRPLGDSLSWVASQEDTNCILLRCVS--CNVSVDKEQKLSK 127
            +  +   L      C+    DSL W+ ++ DTN  LL   S   ++ +DK ++ +K
Sbjct: 235 RSRFDTSILPI----CK----DSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTK 283


>gi|93141001 testican 3 isoform 2 [Homo sapiens]
          Length = 436

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 13  CAGGCECGDKGKCSDSSLLGKRLSEDSSRHQLLQKWASMWSSMSEDASVADMERAQLEEE 72
           C G C C    K + +S   KR   D    ++  +    + ++ E  S     +  L  E
Sbjct: 179 CEGHCPC-PSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPE 237

Query: 73  AAAAEERPLVFLCSGCRRPLGDSLSWVASQEDTNCILLRCVS--CNVSVDKEQKLSK 127
            +  +   L      C+    DSL W+ ++ DTN  LL   S   ++ +DK ++ +K
Sbjct: 238 RSRFDTSILPI----CK----DSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTK 286


>gi|7662330 actin binding LIM protein family, member 3 [Homo
           sapiens]
          Length = 683

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 17/67 (25%)

Query: 80  PLVFLCSGCRR--PLGDSLSWVASQEDTNCILLRCVSCNVSVDKEQKLSKREKENGCVLE 137
           P  F+CS CR+  P+GD +++   +    C+   C +C+ S+   + +  R   +     
Sbjct: 103 PKCFVCSLCRKPFPIGDKVTFSGKE----CV---CQTCSQSMASSKPIKIRGPSH----- 150

Query: 138 TLCCAGC 144
              CAGC
Sbjct: 151 ---CAGC 154


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.129    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,936,431
Number of Sequences: 37866
Number of extensions: 381914
Number of successful extensions: 1575
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1542
Number of HSP's gapped (non-prelim): 62
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.