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Search of human proteins with 94538357
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94538357 18 kDa antrum mucosa protein [Homo sapiens]
(199 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94538357 18 kDa antrum mucosa protein [Homo sapiens] 417 e-117
gi|59858535 trefoil factor interactions(z) 1 [Homo sapiens] 74 6e-14
gi|169164045 PREDICTED: similar to hCG1782458 [Homo sapiens] 69 2e-12
gi|169163256 PREDICTED: similar to hCG1782458 [Homo sapiens] 69 2e-12
gi|45505155 F-box protein 38 isoform a [Homo sapiens] 30 1.0
gi|45545409 F-box protein 38 isoform b [Homo sapiens] 30 1.0
gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precur... 30 1.4
gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precurs... 30 1.4
gi|94538328 estrogen receptor beta isoform 2 [Homo sapiens] 28 3.9
gi|94538325 estrogen receptor beta isoform 2 [Homo sapiens] 28 3.9
gi|10835013 estrogen receptor beta isoform 1 [Homo sapiens] 28 3.9
gi|67191027 integrin alpha 4 precursor [Homo sapiens] 28 3.9
gi|224451032 KIAA1683 isoform a [Homo sapiens] 28 5.1
gi|224451036 KIAA1683 isoform c [Homo sapiens] 28 5.1
gi|54606862 KIAA1683 isoform b [Homo sapiens] 28 5.1
gi|161019170 mucin 5AC [Homo sapiens] 28 6.7
gi|170932518 paxillin isoform 3 [Homo sapiens] 28 6.7
gi|170932516 paxillin isoform 2 [Homo sapiens] 28 6.7
gi|47716519 claudin 20 [Homo sapiens] 28 6.7
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 27 8.8
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 27 8.8
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 27 8.8
gi|153791662 coiled-coil domain containing 71 [Homo sapiens] 27 8.8
>gi|94538357 18 kDa antrum mucosa protein [Homo sapiens]
Length = 199
Score = 417 bits (1071), Expect = e-117
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MLAYSSVHCFREDKMKFTIVFAGLLGVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEH 60
MLAYSSVHCFREDKMKFTIVFAGLLGVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEH
Sbjct: 1 MLAYSSVHCFREDKMKFTIVFAGLLGVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEH 60
Query: 61 NVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKL 120
NVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKL
Sbjct: 61 NVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKL 120
Query: 121 QGKGPGGPPPKGLMYSVNPNKVDDLSKFGKNIANMCRGIPTYMAEEMQEASLFFYSGTCY 180
QGKGPGGPPPKGLMYSVNPNKVDDLSKFGKNIANMCRGIPTYMAEEMQEASLFFYSGTCY
Sbjct: 121 QGKGPGGPPPKGLMYSVNPNKVDDLSKFGKNIANMCRGIPTYMAEEMQEASLFFYSGTCY 180
Query: 181 TTSVLWIVDISFCGDTVEN 199
TTSVLWIVDISFCGDTVEN
Sbjct: 181 TTSVLWIVDISFCGDTVEN 199
>gi|59858535 trefoil factor interactions(z) 1 [Homo sapiens]
Length = 184
Score = 74.3 bits (181), Expect = 6e-14
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 4/183 (2%)
Query: 15 MKFTIVFAGLLGVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEHNVANVDNNNGWDSW 74
MK + F +L +F + N+ +NN G+ Q++V+++NE N A ++ + G S
Sbjct: 1 MKILVAFLVVLTIFGIQSHGYEVFNIISPSNNGGNVQETVTIDNEKNTAIINIHAGSCSS 60
Query: 75 NSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKLQGKGPGGPPPKGLM 134
+I+DY +G+ A+R+ ++ C + KM+ + +P + +L + EK+ +
Sbjct: 61 TTIFDYKHGYIASRVLSRRACFILKMDHQNIPPLNNLQWYIYEKQAL-DNMFSSKYTWVK 119
Query: 135 YSVNPNKVDDLSKF--GKNIANMCRGIPTYMAEEMQEASLFFYSGTCYTTSVLWIVDISF 192
Y+ + + D+ F G I +C+ IP Y E+ E + +G C +L I+ IS
Sbjct: 120 YNPLESLIKDVDWFLLGSPIEKLCKHIPLYKG-EVVENTHNVGAGGCAKAGLLGILGISI 178
Query: 193 CGD 195
C D
Sbjct: 179 CAD 181
>gi|169164045 PREDICTED: similar to hCG1782458 [Homo sapiens]
Length = 399
Score = 69.3 bits (168), Expect = 2e-12
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 19 IVFAGLLGVF-LAPALANYNINVNDDNNNAGSGQQSVSVNNEHNVANVDNNNGWDSWNSI 77
IV + +LGVF L P+LA NI N + G Q + + +A
Sbjct: 116 IVASSILGVFVLTPSLAMMNIRFNHPLYGS-FGTQIIHIGAFQGMA-------------- 160
Query: 78 WDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKLQGKGPGGPPPKGLMYSV 137
++F K C++ +M+K V PS+ + + ++ + P +GL Y+V
Sbjct: 161 ------LLVAKVFNKMACVLARMDKAVFPSLDDISKALDKQAFKYY----PSTRGLTYTV 210
Query: 138 NPNKVDDLSKFGKNIANMCRGIPTYMAEEMQE-ASLFFYSGTCYTTSVLWIVDISFC 193
P+ V +L+++GK I NMCR PTY A++ +E +L S +C+ +L + + C
Sbjct: 211 LPSWVKNLAQYGKPIKNMCRDDPTYFAQQQKEGTALAIDSNSCFEIQLLSFMGLFIC 267
>gi|169163256 PREDICTED: similar to hCG1782458 [Homo sapiens]
Length = 399
Score = 69.3 bits (168), Expect = 2e-12
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 19 IVFAGLLGVF-LAPALANYNINVNDDNNNAGSGQQSVSVNNEHNVANVDNNNGWDSWNSI 77
IV + +LGVF L P+LA NI N + G Q + + +A
Sbjct: 116 IVASSILGVFVLTPSLAMMNIRFNHPLYGS-FGTQIIHIGAFQGMA-------------- 160
Query: 78 WDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKLQGKGPGGPPPKGLMYSV 137
++F K C++ +M+K V PS+ + + ++ + P +GL Y+V
Sbjct: 161 ------LLVAKVFNKMACVLARMDKAVFPSLDDISKALDKQAFKYY----PSTRGLTYTV 210
Query: 138 NPNKVDDLSKFGKNIANMCRGIPTYMAEEMQE-ASLFFYSGTCYTTSVLWIVDISFC 193
P+ V +L+++GK I NMCR PTY A++ +E +L S +C+ +L + + C
Sbjct: 211 LPSWVKNLAQYGKPIKNMCRDDPTYFAQQQKEGTALAIDSNSCFEIQLLSFMGLFIC 267
>gi|45505155 F-box protein 38 isoform a [Homo sapiens]
Length = 1113
Score = 30.4 bits (67), Expect = 1.0
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 26 GVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEHNVANVDNNN 69
G+ ++ AL + N N N+D+NNA + ++ NN H+ + D N
Sbjct: 481 GIGVSSALVS-NQNSNNDDNNAQNNNANIHDNNHHHPDDSDEEN 523
>gi|45545409 F-box protein 38 isoform b [Homo sapiens]
Length = 1188
Score = 30.4 bits (67), Expect = 1.0
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 26 GVFLAPALANYNINVNDDNNNAGSGQQSVSVNNEHNVANVDNNN 69
G+ ++ AL + N N N+D+NNA + ++ NN H+ + D N
Sbjct: 481 GIGVSSALVS-NQNSNNDDNNAQNNNANIHDNNHHHPDDSDEEN 523
>gi|59806343 leukocyte cell derived chemotaxin 1 isoform 2 precursor
[Homo sapiens]
Length = 333
Score = 30.0 bits (66), Expect = 1.4
Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 53 SVSVNNEHNVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLD 112
S+ ++ +N+ +G + ++ D+ NG R + C + K +P + ++
Sbjct: 89 SMEIDAGNNLETFKMGSGAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVT 148
Query: 113 ALVKEKKLQGK-GPGGPPPKGLMYSVNPNKVDDLSKFGKNIANMCRGIPTY 162
KL+GK P L++ V D S + +C +P +
Sbjct: 149 KQSISSKLEGKIMPVKYEENSLIWVAVDQPVKDNSFLSSKVLELCGDLPIF 199
>gi|5901932 leukocyte cell derived chemotaxin 1 isoform 1 precursor
[Homo sapiens]
Length = 334
Score = 30.0 bits (66), Expect = 1.4
Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 53 SVSVNNEHNVANVDNNNGWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLD 112
S+ ++ +N+ +G + ++ D+ NG R + C + K +P + ++
Sbjct: 89 SMEIDAGNNLETFKMGSGAEEAIAVNDFQNGITGIRFAGGEKCYIKAQVKARIPEVGAVT 148
Query: 113 ALVKEKKLQGK-GPGGPPPKGLMYSVNPNKVDDLSKFGKNIANMCRGIPTY 162
KL+GK P L++ V D S + +C +P +
Sbjct: 149 KQSISSKLEGKIMPVKYEENSLIWVAVDQPVKDNSFLSSKVLELCGDLPIF 199
>gi|94538328 estrogen receptor beta isoform 2 [Homo sapiens]
Length = 495
Score = 28.5 bits (62), Expect = 3.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 28 FLAPALANYNINVNDDNNNAGSGQQSVSVN 57
F +PA+ NY+I N N G G+Q+ S N
Sbjct: 48 FYSPAVMNYSIPSNVTNLEGGPGRQTTSPN 77
>gi|94538325 estrogen receptor beta isoform 2 [Homo sapiens]
Length = 495
Score = 28.5 bits (62), Expect = 3.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 28 FLAPALANYNINVNDDNNNAGSGQQSVSVN 57
F +PA+ NY+I N N G G+Q+ S N
Sbjct: 48 FYSPAVMNYSIPSNVTNLEGGPGRQTTSPN 77
>gi|10835013 estrogen receptor beta isoform 1 [Homo sapiens]
Length = 530
Score = 28.5 bits (62), Expect = 3.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 28 FLAPALANYNINVNDDNNNAGSGQQSVSVN 57
F +PA+ NY+I N N G G+Q+ S N
Sbjct: 48 FYSPAVMNYSIPSNVTNLEGGPGRQTTSPN 77
>gi|67191027 integrin alpha 4 precursor [Homo sapiens]
Length = 1032
Score = 28.5 bits (62), Expect = 3.9
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 117 EKKLQGKGPGGPPPK---GLMYSVNPNKVDDLSKFGKNIANMCRGIPTYMAEEMQEASLF 173
E KL G G PP L + P D + KFG+N A+ GI ++ +++ +
Sbjct: 157 ENKLPTGGCYGVPPDLRTELSKRIAPCYQDYVKKFGENFASCQAGISSFYTKDL---IVM 213
Query: 174 FYSGTCYTTSVLWIVDIS 191
G+ Y T L++ +I+
Sbjct: 214 GAPGSSYWTGSLFVYNIT 231
>gi|224451032 KIAA1683 isoform a [Homo sapiens]
Length = 1367
Score = 28.1 bits (61), Expect = 5.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 70 GWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDAL 114
G SWN W+ G A+ ++ K + + + E M S+Q+ + +
Sbjct: 1068 GGQSWNRAWEPARGAASWDTWRNKAVVPPRRSGEPMVSMQAAEEI 1112
>gi|224451036 KIAA1683 isoform c [Homo sapiens]
Length = 1134
Score = 28.1 bits (61), Expect = 5.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 70 GWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDAL 114
G SWN W+ G A+ ++ K + + + E M S+Q+ + +
Sbjct: 835 GGQSWNRAWEPARGAASWDTWRNKAVVPPRRSGEPMVSMQAAEEI 879
>gi|54606862 KIAA1683 isoform b [Homo sapiens]
Length = 1180
Score = 28.1 bits (61), Expect = 5.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 70 GWDSWNSIWDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDAL 114
G SWN W+ G A+ ++ K + + + E M S+Q+ + +
Sbjct: 881 GGQSWNRAWEPARGAASWDTWRNKAVVPPRRSGEPMVSMQAAEEI 925
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 27.7 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 102 KEVMPSIQSLDALVKEK--KLQGKGPGGPPPKGLMY 135
++ +P +QS + +++E K +GPGG PP + Y
Sbjct: 1646 RQRLPPLQSYELILQEGTFKAVARGPGGDPPYKIRY 1681
>gi|170932518 paxillin isoform 3 [Homo sapiens]
Length = 424
Score = 27.7 bits (60), Expect = 6.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 103 EVMPSIQSLDALVKEKKLQGKGPGGPP-PKGLMYSVNPNKVDDLSKFGKNIANMCRGI 159
E+M S+ + + K PGGPP P + S+ + DL+K G +A + +G+
Sbjct: 135 ELMASLSDFKFMAQGKTGSSSPPGGPPKPGSQLDSMLGSLQSDLNKLG--VATVAKGV 190
>gi|170932516 paxillin isoform 2 [Homo sapiens]
Length = 557
Score = 27.7 bits (60), Expect = 6.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 103 EVMPSIQSLDALVKEKKLQGKGPGGPP-PKGLMYSVNPNKVDDLSKFGKNIANMCRGI 159
E+M S+ + + K PGGPP P + S+ + DL+K G +A + +G+
Sbjct: 268 ELMASLSDFKFMAQGKTGSSSPPGGPPKPGSQLDSMLGSLQSDLNKLG--VATVAKGV 323
>gi|47716519 claudin 20 [Homo sapiens]
Length = 219
Score = 27.7 bits (60), Expect = 6.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 15 MKFTIVFAGLLGVFLAPALANYNINVNDDNN 45
+ F + +G+ GV A L N+ +NV+ D+N
Sbjct: 9 LAFILALSGVSGVLTATLLPNWKVNVDVDSN 39
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 27.3 bits (59), Expect = 8.8
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 14/107 (13%)
Query: 45 NNAGSGQQSVSVNNEHNVANVDNNNGWD-------SWNSIWDYGNGFAATRLFQKKTCIV 97
N GS +V E ++V ++NG + SW+S+W + R IV
Sbjct: 4104 NRRGSMSYLAAVEEEVEESSVKSDNGDEKAEPSPQSWSSLWKHDKDMEEDRASSSSGTIV 4163
Query: 98 HKMNKEVMPSIQSLDALVKEKKLQGKGPGGPPPKGLMYSVNPNKVDD 144
+ ++ S S+ ++ L + +G S+ PN+ ++
Sbjct: 4164 QEAYGKISTSDNSMAQILTPDSLNTE-------QGPECSLRPNQTEE 4203
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 27.3 bits (59), Expect = 8.8
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 14/107 (13%)
Query: 45 NNAGSGQQSVSVNNEHNVANVDNNNGWD-------SWNSIWDYGNGFAATRLFQKKTCIV 97
N GS +V E ++V ++NG + SW+S+W + R IV
Sbjct: 4104 NRRGSMSYLAAVEEEVEESSVKSDNGDEKAEPSPQSWSSLWKHDKDMEEDRASSSSGTIV 4163
Query: 98 HKMNKEVMPSIQSLDALVKEKKLQGKGPGGPPPKGLMYSVNPNKVDD 144
+ ++ S S+ ++ L + +G S+ PN+ ++
Sbjct: 4164 QEAYGKISTSDNSMAQILTPDSLNTE-------QGPECSLRPNQTEE 4203
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 27.3 bits (59), Expect = 8.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 102 KEVMPSIQSLDALVKEKKLQGKGPGGPPPKGLMYSVNPNKVDDLSK 147
+E++P Q A V + + P P + YSV P+ VD+ K
Sbjct: 1207 EEIVPDSQEATAHVSQDQKMEPQPPNVPESEMKYSVLPDMVDEPKK 1252
>gi|153791662 coiled-coil domain containing 71 [Homo sapiens]
Length = 467
Score = 27.3 bits (59), Expect = 8.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 112 DALVKEKKLQGKGPGGPPPK 131
D+ +K +K GKGPG P PK
Sbjct: 207 DSPLKLRKSSGKGPGNPRPK 226
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,237,938
Number of Sequences: 37866
Number of extensions: 362182
Number of successful extensions: 978
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 27
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.