Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ESR2 Sequence: fasta or formatted (530aa) NCBI GI: 10835013
Description:

estrogen receptor beta isoform 1

Referenced in:

Organs and Hormones
Nuclear Receptors

Other entries for this name:
alt prot [495aa] estrogen receptor beta isoform 2
alt prot [495aa] estrogen receptor beta isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         34           1
 C cysteine            4.0         21           1
 D aspartate           3.8         20           1
 E glutamate           5.7         30           1
 F phenylalanine       1.9         10           2
 G glycine             5.3         28           2
 H histidine           4.0         21           2
 I isoleucine          3.6         19           1
 K lysine              5.7         30           2
 L leucine            11.5         61           3
 M methionine          3.8         20           3
 N asparagine          3.8         20           1
 P proline             5.8         31           2
 Q glutamine           3.6         19           3
 R arginine            6.0         32           2
 S serine             11.1         59           2
 T threonine           3.6         19           2
 V valine              6.2         33           2
 W tryptophan          1.3          7           1
 Y tyrosine            3.0         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   estrogen receptor beta isoform 1 
ESR2                  0.883   estrogen receptor beta isoform 2 
ESR2                  0.883   estrogen receptor beta isoform 2 
ESR1                  0.413   estrogen receptor alpha isoform 4 
ESR1                  0.413   estrogen receptor alpha isoform 3 
ESR1                  0.413   estrogen receptor alpha isoform 2 
ESR1                  0.413   estrogen receptor alpha isoform 1 
ESRRG                 0.205   estrogen-related receptor gamma isoform 2 
ESRRG                 0.205   estrogen-related receptor gamma isoform 2 
ESRRG                 0.205   estrogen-related receptor gamma isoform 1 
ESRRG                 0.205   estrogen-related receptor gamma isoform 2 
ESRRB                 0.201   estrogen-related receptor beta 
ESRRA                 0.189   estrogen-related receptor alpha 
PGR                   0.136   progesterone receptor 
RXRB                  0.133   retinoid X receptor, beta 
RXRG                  0.131   retinoid X receptor, gamma isoform a 
NR3C2                 0.129   nuclear receptor subfamily 3, group C, member 2 [Ho...
NR3C1                 0.127   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.127   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.127   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.127   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.127   nuclear receptor subfamily 3, group C, member 1 isofo...
NR3C1                 0.127   nuclear receptor subfamily 3, group C, member 1 isof...
RXRA                  0.127   retinoid X receptor, alpha 
AR                    0.125   androgen receptor isoform 2 
AR                    0.125   androgen receptor isoform 1 
NR3C1                 0.123   nuclear receptor subfamily 3, group C, member 1 isof...
NR4A1                 0.120   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.120   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR2E1                 0.117   nuclear receptor subfamily 2, group E, member 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press