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Search of human proteins with 93588657
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|93588657 claudin domain containing 1 protein isoform d [Homo
sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|93588657 claudin domain containing 1 protein isoform d [Homo ... 330 3e-91
gi|93588650 claudin domain containing 1 protein isoform a [Homo ... 326 6e-90
gi|93588620 claudin domain containing 1 protein isoform b [Homo ... 326 6e-90
gi|93588614 claudin domain containing 1 protein isoform a [Homo ... 326 6e-90
gi|93588624 claudin domain containing 1 protein isoform a [Homo ... 326 6e-90
gi|11096340 claudin domain containing 1 protein isoform a [Homo ... 326 6e-90
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 51 4e-07
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 51 4e-07
gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens] 51 4e-07
gi|226437592 transmembrane protein 114 [Homo sapiens] 51 4e-07
gi|4502875 claudin 3 [Homo sapiens] 39 0.002
gi|169171558 PREDICTED: hypothetical protein [Homo sapiens] 36 0.012
gi|169171977 PREDICTED: hypothetical protein [Homo sapiens] 36 0.012
gi|169171016 PREDICTED: hypothetical protein [Homo sapiens] 36 0.012
gi|239509059 PREDICTED: hypothetical protein [Homo sapiens] 36 0.012
gi|52218860 olfactory receptor, family 11, subfamily H, member 6... 36 0.012
gi|22027551 voltage-dependent calcium channel gamma-5 subunit is... 36 0.016
gi|4505907 peripheral myelin protein 22 [Homo sapiens] 35 0.020
gi|24430165 peripheral myelin protein 22 [Homo sapiens] 35 0.020
gi|24430163 peripheral myelin protein 22 [Homo sapiens] 35 0.020
gi|183979973 claudin 19 isoform a [Homo sapiens] 34 0.045
gi|183979975 claudin 19 isoform b [Homo sapiens] 34 0.045
gi|4503561 epithelial membrane protein 2 [Homo sapiens] 33 0.10
gi|7656950 voltage-dependent calcium channel gamma-5 subunit iso... 32 0.17
gi|9966781 claudin 2 [Homo sapiens] 31 0.50
gi|52546691 olfactory receptor, family 11, subfamily H, member 1... 31 0.50
gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Ho... 31 0.50
gi|61656203 olfactory receptor, family 11, subfamily H, member 1... 30 0.66
gi|7656981 claudin 15 [Homo sapiens] 30 1.1
gi|154426280 V-set and immunoglobulin domain containing 4 isofor... 28 2.5
>gi|93588657 claudin domain containing 1 protein isoform d [Homo
sapiens]
Length = 158
Score = 330 bits (846), Expect = 3e-91
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MGESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGA 60
MGESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGA
Sbjct: 1 MGESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGA 60
Query: 61 LIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWS 120
LIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWS
Sbjct: 61 LIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWS 120
Query: 121 FCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 158
FCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA
Sbjct: 121 FCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 158
>gi|93588650 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 326 bits (835), Expect = 6e-90
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 3 ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 62
ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI
Sbjct: 98 ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 157
Query: 63 GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 122
GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC
Sbjct: 158 GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 217
Query: 123 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 158
LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA
Sbjct: 218 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 253
>gi|93588620 claudin domain containing 1 protein isoform b [Homo
sapiens]
Length = 276
Score = 326 bits (835), Expect = 6e-90
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 3 ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 62
ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI
Sbjct: 121 ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 180
Query: 63 GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 122
GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC
Sbjct: 181 GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 240
Query: 123 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 158
LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA
Sbjct: 241 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 276
>gi|93588614 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 326 bits (835), Expect = 6e-90
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 3 ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 62
ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI
Sbjct: 98 ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 157
Query: 63 GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 122
GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC
Sbjct: 158 GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 217
Query: 123 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 158
LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA
Sbjct: 218 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 253
>gi|93588624 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 326 bits (835), Expect = 6e-90
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 3 ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 62
ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI
Sbjct: 98 ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 157
Query: 63 GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 122
GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC
Sbjct: 158 GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 217
Query: 123 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 158
LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA
Sbjct: 218 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 253
>gi|11096340 claudin domain containing 1 protein isoform a [Homo
sapiens]
Length = 253
Score = 326 bits (835), Expect = 6e-90
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 3 ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 62
ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI
Sbjct: 98 ESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALI 157
Query: 63 GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 122
GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC
Sbjct: 158 GLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFC 217
Query: 123 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 158
LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA
Sbjct: 218 LACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA 253
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 51.2 bits (121), Expect = 4e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 47 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 98
LLP +SL LM FG + G + + ++ + TGIL L + TL +S Y+A
Sbjct: 109 LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 167
Query: 99 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 142
+ LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 168 ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 210
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 51.2 bits (121), Expect = 4e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 47 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 98
LLP +SL LM FG + G + + ++ + TGIL L + TL +S Y+A
Sbjct: 103 LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 161
Query: 99 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 142
+ LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 162 ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 204
>gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 122
Score = 51.2 bits (121), Expect = 4e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 47 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 98
LLP +SL LM FG + G + + ++ + TGIL L + TL +S Y+A
Sbjct: 8 LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 66
Query: 99 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 142
+ LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 67 ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 109
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 51.2 bits (121), Expect = 4e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 47 LLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVA-------- 98
LLP +SL LM FG + G + + ++ + TGIL L + TL +S Y+A
Sbjct: 109 LLP-LSLILMVFGGMTGFLSFLLQAYLLLLLTGILFLFGAMVTLAGISVYIAYSAAAFRE 167
Query: 99 GIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 142
+ LL +K L D V FGWS L +S + + A F+ AA
Sbjct: 168 ALCLLEEK-ALLDQVDISFGWSLALGWISFIAELLTGAAFLAAA 210
>gi|4502875 claudin 3 [Homo sapiens]
Length = 220
Score = 38.5 bits (88), Expect = 0.002
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 51 VSLGLMCFGALIGLCACICRSLYP--------TIATGILHLLAGLCTLGSVSCYVAGIEL 102
V++ L FG L+ L C + TI G+L LLA L TL VS I
Sbjct: 85 VAILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAGVLFLLAALLTLVPVSWSANTIIR 144
Query: 103 LHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMK 153
+P+ E G + +A LQ + AL + K+YT K
Sbjct: 145 DFYNPVVPEAQKREMGAGLYVGWAAAALQLLGGALLCCSCPPREKKYTATK 195
>gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 36.2 bits (82), Expect = 0.012
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 51 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 108
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 186 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 245
Query: 109 ---LPDNVSGEFGWS-FC 122
LPD++S +GWS FC
Sbjct: 246 LYGLPDDISHGYGWSMFC 263
>gi|169171977 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 36.2 bits (82), Expect = 0.012
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 51 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 108
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137
Query: 109 ---LPDNVSGEFGWS-FC 122
LPD++S +GWS FC
Sbjct: 138 LYGLPDDISHGYGWSMFC 155
>gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 36.2 bits (82), Expect = 0.012
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 51 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 108
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137
Query: 109 ---LPDNVSGEFGWS-FC 122
LPD++S +GWS FC
Sbjct: 138 LYGLPDDISHGYGWSMFC 155
>gi|239509059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 36.2 bits (82), Expect = 0.012
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 51 VSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLE-- 108
+++ ++ FG +IG+ C G+L L+ G + S+ VAGI +
Sbjct: 78 MAVAIILFGWIIGVLGCCWDRGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYPRY 137
Query: 109 ---LPDNVSGEFGWS-FC 122
LPD++S +GWS FC
Sbjct: 138 LYGLPDDISHGYGWSMFC 155
>gi|52218860 olfactory receptor, family 11, subfamily H, member 6
[Homo sapiens]
Length = 330
Score = 36.2 bits (82), Expect = 0.012
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 68 ICRSL-YPTIATG-ILHLLAGLCTLGSVSCYVAGIELLHQKL----ELPDNVSGEFGWSF 121
ICR L YP+I TG +L +C +G CY I L+ Q + D++ + G F
Sbjct: 144 ICRPLHYPSIMTGKFCIILVCVCWVGGFLCYPVPIVLISQLPFCGPNIIDHLVCDPGPLF 203
Query: 122 CLACVSAP 129
LAC+SAP
Sbjct: 204 ALACISAP 211
>gi|22027551 voltage-dependent calcium channel gamma-5 subunit
isoform a [Homo sapiens]
Length = 275
Score = 35.8 bits (81), Expect = 0.016
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 49 PFVSLGLMCFGALIGLCACIC--RSLYPTIATGILHLLAGLCTLGSVSCYVAGI--ELLH 104
P VSL M G ++ I R++ ++ GI +L+GL + + Y++ I E+L+
Sbjct: 104 PLVSLFFMFIGFILNNIGHIRPHRTILAFVS-GIFFILSGLSLVVGLVLYISSINDEMLN 162
Query: 105 QKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYR 156
+ + + ++GWSF A +S L A + ++ K YT YR
Sbjct: 163 RTKDAETYFNYKYGWSFAFAAISFLLTESAGVMSVYLF---MKRYTAEDMYR 211
>gi|4505907 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 35.4 bits (80), Expect = 0.020
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 78 TGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASAL 137
TGI +LAGLC + + + Y + H + L + S +G+++ LA V+ PL ++ +
Sbjct: 99 TGIFQILAGLCVMSAAAIYT----VRHPEWHLNSDYS--YGFAYILAWVAFPLALLSGVI 152
Query: 138 FI 139
++
Sbjct: 153 YV 154
>gi|24430165 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 35.4 bits (80), Expect = 0.020
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 78 TGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASAL 137
TGI +LAGLC + + + Y + H + L + S +G+++ LA V+ PL ++ +
Sbjct: 99 TGIFQILAGLCVMSAAAIYT----VRHPEWHLNSDYS--YGFAYILAWVAFPLALLSGVI 152
Query: 138 FI 139
++
Sbjct: 153 YV 154
>gi|24430163 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 35.4 bits (80), Expect = 0.020
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 78 TGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASAL 137
TGI +LAGLC + + + Y + H + L + S +G+++ LA V+ PL ++ +
Sbjct: 99 TGIFQILAGLCVMSAAAIYT----VRHPEWHLNSDYS--YGFAYILAWVAFPLALLSGVI 152
Query: 138 FI 139
++
Sbjct: 153 YV 154
>gi|183979973 claudin 19 isoform a [Homo sapiens]
Length = 224
Score = 34.3 bits (77), Expect = 0.045
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 76 IATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMAS 135
IA G L +LAGLCTL +VS Y + P N EFG + + SA L +
Sbjct: 120 IAGGALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGG 179
Query: 136 A 136
+
Sbjct: 180 S 180
>gi|183979975 claudin 19 isoform b [Homo sapiens]
Length = 211
Score = 34.3 bits (77), Expect = 0.045
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 76 IATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMAS 135
IA G L +LAGLCTL +VS Y + P N EFG + + SA L +
Sbjct: 120 IAGGALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGG 179
Query: 136 A 136
+
Sbjct: 180 S 180
>gi|4503561 epithelial membrane protein 2 [Homo sapiens]
Length = 167
Score = 33.1 bits (74), Expect = 0.10
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 76 IATGILHLLAGLCTLGSVSCYVAGIELLHQKLE--LPDNVSGEFGWSFCLACVSAPLQFM 133
+ T I+ L++ LC + + S Y E +H K P G +G+S+ LA V+ F+
Sbjct: 96 VLTSIIQLMSCLCVMIAASIYTDRREDIHDKNAKFYPVTREGSYGYSYILAWVAFACTFI 155
Query: 134 ASALFI 139
+ +++
Sbjct: 156 SGMMYL 161
>gi|7656950 voltage-dependent calcium channel gamma-5 subunit
isoform b [Homo sapiens]
Length = 296
Score = 32.3 bits (72), Expect = 0.17
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 49 PFVSLGLMCFGALIGLCACIC--RSLYPTIATGILHLLAGLCTLGSVSCYVAGI--ELLH 104
P VSL M G ++ I R++ ++ GI +L+GL + + Y++ I E+L+
Sbjct: 104 PLVSLFFMFIGFILNNIGHIRPHRTILAFVS-GIFFILSGLSLVVGLVLYISSINDEMLN 162
Query: 105 QKLELPDNVSGEFGWSFCLACVS 127
+ + + ++GWSF A +S
Sbjct: 163 RTKDAETYFNYKYGWSFAFAAIS 185
>gi|9966781 claudin 2 [Homo sapiens]
Length = 230
Score = 30.8 bits (68), Expect = 0.50
Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 55 LMCFGALIGL-CACICRSLYP----TIATGILHLLAGLCTLGSVSCYVAGIELLHQKLEL 109
L C +++G+ C C+ +A G+ +L GL V+ + GI +
Sbjct: 93 LACIISVVGMRCTVFCQESRAKDRVAVAGGVFFILGGLLGFIPVAWNLHGILRDFYSPLV 152
Query: 110 PDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYR 156
PD++ E G + L +S+ +A + ++ + R AY+
Sbjct: 153 PDSMKFEIGEALYLGIISSLFSLIAGIILCFSCSSQRNRSNYYDAYQ 199
>gi|52546691 olfactory receptor, family 11, subfamily H, member 1
[Homo sapiens]
Length = 326
Score = 30.8 bits (68), Expect = 0.50
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 53 LGLMCFGALIGLCACICRSLYPTIATGILHL-LAGLCTLGSVSCYVAGIELLHQKL---- 107
L +M F + +C + LYP I TG L+ L LC + ++ I L+ Q
Sbjct: 130 LTVMAFDQYLAICRPL---LYPNIMTGHLYAKLVILCWVCGFLWFLIPIVLISQMPFCGP 186
Query: 108 ELPDNVSGEFGWSFCLACVSAP 129
+ D+V + G F L CVSAP
Sbjct: 187 NIIDHVVCDPGPRFALDCVSAP 208
>gi|4502539 voltage-dependent calcium channel gamma-1 subunit [Homo
sapiens]
Length = 222
Score = 30.8 bits (68), Expect = 0.50
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 52 SLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPD 111
SLG + G+L L + + Y + + AGLC L SV ++ + ++ D
Sbjct: 114 SLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCILVSVEVMRQSVK---RMIDSED 170
Query: 112 NVSGE--FGWSFCLACVSAPLQFM 133
V E + WSF AC + L F+
Sbjct: 171 TVWIEYYYSWSFACACAAFILLFL 194
>gi|61656203 olfactory receptor, family 11, subfamily H, member 12
[Homo sapiens]
Length = 326
Score = 30.4 bits (67), Expect = 0.66
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 20/88 (22%)
Query: 53 LGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAG-------IELLHQ 105
L +M F + +C + LYP I TG HL A L L C+V G I L+ Q
Sbjct: 130 LTVMAFDQYLAICRPL---LYPNIMTG--HLCAKLVIL----CWVCGFLWFLIPIVLISQ 180
Query: 106 KL----ELPDNVSGEFGWSFCLACVSAP 129
+ D+V + G F L CVSAP
Sbjct: 181 MPFCGPNIIDHVVCDPGPRFALDCVSAP 208
>gi|7656981 claudin 15 [Homo sapiens]
Length = 228
Score = 29.6 bits (65), Expect = 1.1
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 37 LRTYLWRCQFLLPFVSLGLMCFGALIGLCACIC---------RSLYPTIATGILHLLAGL 87
L Y+ C+ L+ ++ L G L+G+ C R G LH+LAG+
Sbjct: 71 LSGYIQACRALM-ITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALHILAGI 129
Query: 88 CTLGSVSCYVAGI 100
C + ++S Y I
Sbjct: 130 CGMVAISWYAFNI 142
>gi|154426280 V-set and immunoglobulin domain containing 4 isoform 2
[Homo sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 2.5
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 83 LLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAA 142
+L GL LG ++ G +L E+P++V+G + L C PLQ L W
Sbjct: 3 ILLGLLLLGHLTVDTYGRPIL----EVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLV 58
Query: 143 HTNRKEYTL 151
T+
Sbjct: 59 QRGSDPVTI 67
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.141 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,088,700
Number of Sequences: 37866
Number of extensions: 253089
Number of successful extensions: 566
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 50
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.