Guide to the Human Genome
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Name: CT47A4 Sequence: fasta or formatted (288aa) NCBI GI: 121949771
Description:

cancer/testis antigen family 47, member A4

Referenced in:

Melanoma Antigen Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.7         48           3
 C cysteine            0.0          0           0
 D aspartate           5.2         15           1
 E glutamate          17.7         51           7
 F phenylalanine       0.7          2           1
 G glycine             9.7         28           2
 H histidine           2.4          7           1
 I isoleucine          1.7          5           1
 K lysine              3.1          9           1
 L leucine             7.3         21           3
 M methionine          1.4          4           1
 N asparagine          3.1          9           1
 P proline             7.3         21           2
 Q glutamine           4.5         13           1
 R arginine            3.8         11           2
 S serine              5.2         15           2
 T threonine           3.1          9           1
 V valine              5.9         17           2
 W tryptophan          0.7          2           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cancer/testis antigen family 47, member A4 
CT47A1                1.000   cancer/testis antigen family 47, member A1 
CT47A2                1.000   cancer/testis antigen family 47, member A2 
CT47A3                1.000   cancer/testis antigen family 47, member A3 
CT47A5                1.000   cancer/testis antigen family 47, member A5 
CT47A6                1.000   cancer/testis antigen family 47, member A6 
CT47A7                1.000   cancer/testis antigen family 47, member A7 
CT47A8                1.000   cancer/testis antigen family 47, member A8 
CT47A9                1.000   cancer/testis antigen family 47, member A9 
CT47A10               1.000   cancer/testis antigen family 47, member A10 
CT47A11               1.000   cancer/testis antigen family 47, member A11 
CT47B1                0.834   cancer/testis antigen family 147, member B1 
LOC727838             0.595   PREDICTED: similar to cancer/testis antigen family ...
LOC727838             0.582   PREDICTED: similar to cancer/testis antigen family ...
LOC727838             0.576   PREDICTED: similar to cancer/testis antigen family ...
RP1L1                 0.063   retinitis pigmentosa 1-like 1 
MYST3                 0.041   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.041   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.041   MYST histone acetyltransferase (monocytic leukemia)...
MYT1                  0.041   myelin transcription factor 1 
NEFL                  0.041   neurofilament, light polypeptide 68kDa 
PELP1                 0.039   proline, glutamic acid and leucine rich protein 1 [...
NEFM                  0.039   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.039   neurofilament, medium polypeptide 150kDa isoform 2 ...
LRRFIP1               0.037   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.037   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.037   leucine rich repeat (in FLII) interacting protein 1...
DGKK                  0.037   diacylglycerol kinase kappa 
TRIM44                0.035   DIPB protein 
VGF                   0.035   VGF nerve growth factor inducible precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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