Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 89886456
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89886456 malate dehydrogenase 1B, NAD (soluble) [Homo
sapiens]
(518 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89886456 malate dehydrogenase 1B, NAD (soluble) [Homo sapiens] 1042 0.0
gi|5174539 cytosolic malate dehydrogenase [Homo sapiens] 136 5e-32
gi|149999362 zinc finger protein 239 [Homo sapiens] 32 1.8
gi|149999360 zinc finger protein 239 [Homo sapiens] 32 1.8
gi|149999358 zinc finger protein 239 [Homo sapiens] 32 1.8
gi|149999356 zinc finger protein 239 [Homo sapiens] 32 1.8
gi|24797151 dimethylglycine dehydrogenase precursor [Homo sapiens] 31 3.1
gi|32455236 helicase (DNA) B [Homo sapiens] 30 5.3
gi|237681069 spatacsin isoform 2 [Homo sapiens] 30 6.9
gi|93204888 spatacsin isoform 1 [Homo sapiens] 30 6.9
gi|40807445 protein regulator of cytokinesis 1 isoform 3 [Homo s... 29 9.1
gi|40807443 protein regulator of cytokinesis 1 isoform 2 [Homo s... 29 9.1
gi|4506039 protein regulator of cytokinesis 1 isoform 1 [Homo sa... 29 9.1
>gi|89886456 malate dehydrogenase 1B, NAD (soluble) [Homo sapiens]
Length = 518
Score = 1042 bits (2695), Expect = 0.0
Identities = 518/518 (100%), Positives = 518/518 (100%)
Query: 1 MAKFVIAGRADCPYYAKTELVADYLQKNLPDFRIHKITQRPEVWEDWLKDVCEKNKWSHK 60
MAKFVIAGRADCPYYAKTELVADYLQKNLPDFRIHKITQRPEVWEDWLKDVCEKNKWSHK
Sbjct: 1 MAKFVIAGRADCPYYAKTELVADYLQKNLPDFRIHKITQRPEVWEDWLKDVCEKNKWSHK 60
Query: 61 NSPIIWRELLDRGGKGLLLGGYNEFLEHAQLYYDVTSSMTTELMMVIAQENLGAHIEKEQ 120
NSPIIWRELLDRGGKGLLLGGYNEFLEHAQLYYDVTSSMTTELMMVIAQENLGAHIEKEQ
Sbjct: 61 NSPIIWRELLDRGGKGLLLGGYNEFLEHAQLYYDVTSSMTTELMMVIAQENLGAHIEKEQ 120
Query: 121 EEEALKTCINPLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAEEHLKSL 180
EEEALKTCINPLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAEEHLKSL
Sbjct: 121 EEEALKTCINPLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAEEHLKSL 180
Query: 181 VVETQDLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLRSRVPLCRLYG 240
VVETQDLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLRSRVPLCRLYG
Sbjct: 181 VVETQDLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLRSRVPLCRLYG 240
Query: 241 YLIEKNAHESVRVIVGGRTFVNLKTVLLMRYAPRIAHNIIAVALGVEGEAKAILARKLKT 300
YLIEKNAHESVRVIVGGRTFVNLKTVLLMRYAPRIAHNIIAVALGVEGEAKAILARKLKT
Sbjct: 241 YLIEKNAHESVRVIVGGRTFVNLKTVLLMRYAPRIAHNIIAVALGVEGEAKAILARKLKT 300
Query: 301 APSYIKDVIIWGNISGNNYVDLRKTRVYRYESAIWGPLHYSRPVLNLIFDSEWVKREFVA 360
APSYIKDVIIWGNISGNNYVDLRKTRVYRYESAIWGPLHYSRPVLNLIFDSEWVKREFVA
Sbjct: 301 APSYIKDVIIWGNISGNNYVDLRKTRVYRYESAIWGPLHYSRPVLNLIFDSEWVKREFVA 360
Query: 361 ILKNLTTTGRQFGGILAAHSIATTLKYWYHGSPPGEIVSLGILSEGQFGIPKGIVFSMPV 420
ILKNLTTTGRQFGGILAAHSIATTLKYWYHGSPPGEIVSLGILSEGQFGIPKGIVFSMPV
Sbjct: 361 ILKNLTTTGRQFGGILAAHSIATTLKYWYHGSPPGEIVSLGILSEGQFGIPKGIVFSMPV 420
Query: 421 KFENGTWVVLTDLKDVEISEQIMTRMTSDLIQEKLVALGDKIHFQPYQSGHKDLVPDEEK 480
KFENGTWVVLTDLKDVEISEQIMTRMTSDLIQEKLVALGDKIHFQPYQSGHKDLVPDEEK
Sbjct: 421 KFENGTWVVLTDLKDVEISEQIMTRMTSDLIQEKLVALGDKIHFQPYQSGHKDLVPDEEK 480
Query: 481 NLAMSDAAEFPNQIPQTTFEKPQSLEFLNEFEGKTVES 518
NLAMSDAAEFPNQIPQTTFEKPQSLEFLNEFEGKTVES
Sbjct: 481 NLAMSDAAEFPNQIPQTTFEKPQSLEFLNEFEGKTVES 518
>gi|5174539 cytosolic malate dehydrogenase [Homo sapiens]
Length = 334
Score = 136 bits (342), Expect = 5e-32
Identities = 93/330 (28%), Positives = 159/330 (48%), Gaps = 15/330 (4%)
Query: 131 PLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAEEHLKSLVVETQDLASP 190
P++V +T A+ Y+L+ + +G VFG I + L D L +++E QD A P
Sbjct: 4 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP 63
Query: 191 VLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLRSRVPLCRLYGYLIEKNAHES 250
+L+ V K + AF+ V +++ +E +D L++ V + + G ++K A +S
Sbjct: 64 LLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKS 123
Query: 251 VRVIVGGRTFVNLKTVLLMRYAPRI-AHNIIAVALGVEGEAKAILARKLKTAPSYIKDVI 309
V+VIV G N + + AP I N + AKA +A KL + +K+VI
Sbjct: 124 VKVIVVGNP-ANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVI 182
Query: 310 IWGNISGNNYVDLRKTRVYRYESAIWGPLHYSRPVLNLIFDSEWVKREFVAILKN----L 365
IWGN S Y D+ +V + V + D W+K EFV ++ +
Sbjct: 183 IWGNHSSTQYPDVNHAKVKLQGKEV--------GVYEALKDDSWLKGEFVTTVQQRGAAV 234
Query: 366 TTTGRQFGGILAAHSIATTLKYWYHGSPPGEIVSLGILSEG-QFGIPKGIVFSMPVKFEN 424
+ + AA +I ++ + G+P GE VS+G++S+G +G+P +++S PV +N
Sbjct: 235 IKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKN 294
Query: 425 GTWVVLTDLKDVEISEQIMTRMTSDLIQEK 454
TW + L + S + M +L +EK
Sbjct: 295 KTWKFVEGLPINDFSREKMDLTAKELTEEK 324
>gi|149999362 zinc finger protein 239 [Homo sapiens]
Length = 458
Score = 31.6 bits (70), Expect = 1.8
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 129 INPLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAEEHLKSLV---VETQ 185
I+P Q W AS+P N ++T + F+N ++E +L V ++TQ
Sbjct: 27 ISPCQQW-GEASSPISRNRDSVMT----------LQSGCFENIESETYLPLKVSSQIDTQ 75
Query: 186 DLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDC 228
D SV C + +++ + V+++ST ++V E C
Sbjct: 76 D------SSVKFCKNEPQDHQESRRLFVMEESTERKVIKGESC 112
>gi|149999360 zinc finger protein 239 [Homo sapiens]
Length = 458
Score = 31.6 bits (70), Expect = 1.8
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 129 INPLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAEEHLKSLV---VETQ 185
I+P Q W AS+P N ++T + F+N ++E +L V ++TQ
Sbjct: 27 ISPCQQW-GEASSPISRNRDSVMT----------LQSGCFENIESETYLPLKVSSQIDTQ 75
Query: 186 DLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDC 228
D SV C + +++ + V+++ST ++V E C
Sbjct: 76 D------SSVKFCKNEPQDHQESRRLFVMEESTERKVIKGESC 112
>gi|149999358 zinc finger protein 239 [Homo sapiens]
Length = 458
Score = 31.6 bits (70), Expect = 1.8
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 129 INPLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAEEHLKSLV---VETQ 185
I+P Q W AS+P N ++T + F+N ++E +L V ++TQ
Sbjct: 27 ISPCQQW-GEASSPISRNRDSVMT----------LQSGCFENIESETYLPLKVSSQIDTQ 75
Query: 186 DLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDC 228
D SV C + +++ + V+++ST ++V E C
Sbjct: 76 D------SSVKFCKNEPQDHQESRRLFVMEESTERKVIKGESC 112
>gi|149999356 zinc finger protein 239 [Homo sapiens]
Length = 458
Score = 31.6 bits (70), Expect = 1.8
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 129 INPLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAEEHLKSLV---VETQ 185
I+P Q W AS+P N ++T + F+N ++E +L V ++TQ
Sbjct: 27 ISPCQQW-GEASSPISRNRDSVMT----------LQSGCFENIESETYLPLKVSSQIDTQ 75
Query: 186 DLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDC 228
D SV C + +++ + V+++ST ++V E C
Sbjct: 76 D------SSVKFCKNEPQDHQESRRLFVMEESTERKVIKGESC 112
>gi|24797151 dimethylglycine dehydrogenase precursor [Homo sapiens]
Length = 866
Score = 30.8 bits (68), Expect = 3.1
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 336 GPLHYSRPVLNLIFDSEWVKREFVAILKNLTTTGRQFG-GILAAHSIATTLKYW-YHGSP 393
GP+ YS +L ++ + V+ +VAI FG GI+ A + L W HG P
Sbjct: 370 GPITYSPDILPMVGPHQGVRNYWVAI---------GFGYGIIHAGGVGKYLSDWILHGEP 420
Query: 394 PGEIVSL 400
P +++ L
Sbjct: 421 PFDLIEL 427
>gi|32455236 helicase (DNA) B [Homo sapiens]
Length = 1087
Score = 30.0 bits (66), Expect = 5.3
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 459 GDKIHFQPYQSGHKDLVPDEEKNLAMSDAAEFPNQIPQTTFEKPQSLEFL 508
G K QP Q+G ++L D E +L + + F N + T + P+ +EFL
Sbjct: 174 GRKDQKQPTQNGQEELFLDNEMSLPLENTIPFRNVM--TALQFPKIMEFL 221
>gi|237681069 spatacsin isoform 2 [Homo sapiens]
Length = 2330
Score = 29.6 bits (65), Expect = 6.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 48 LKDVCEKNKWSHKNSPIIWRELLDRGGKGLLLGGYNEFLEHAQL 91
++D E + W+ ++ +IWR LL R L+ G+ F + + L
Sbjct: 1506 IQDSTEDHTWNLEDLSVIWRTLLTRQKSKTLIRGFQLFFKDSPL 1549
>gi|93204888 spatacsin isoform 1 [Homo sapiens]
Length = 2443
Score = 29.6 bits (65), Expect = 6.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 48 LKDVCEKNKWSHKNSPIIWRELLDRGGKGLLLGGYNEFLEHAQL 91
++D E + W+ ++ +IWR LL R L+ G+ F + + L
Sbjct: 1506 IQDSTEDHTWNLEDLSVIWRTLLTRQKSKTLIRGFQLFFKDSPL 1549
>gi|40807445 protein regulator of cytokinesis 1 isoform 3 [Homo
sapiens]
Length = 566
Score = 29.3 bits (64), Expect = 9.1
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 171 KQAEEHLKSLVVETQDLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLR 230
K +E L ++ E + L +++S+S+C K + + + LE LR
Sbjct: 45 KHIKELLDMMIAEEESLKERLIKSISVCQKELNTLCSELHVEPFQEEGETTILQLEKDLR 104
Query: 231 SRVPLCR 237
++V L R
Sbjct: 105 TQVELMR 111
>gi|40807443 protein regulator of cytokinesis 1 isoform 2 [Homo
sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 9.1
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 171 KQAEEHLKSLVVETQDLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLR 230
K +E L ++ E + L +++S+S+C K + + + LE LR
Sbjct: 45 KHIKELLDMMIAEEESLKERLIKSISVCQKELNTLCSELHVEPFQEEGETTILQLEKDLR 104
Query: 231 SRVPLCR 237
++V L R
Sbjct: 105 TQVELMR 111
>gi|4506039 protein regulator of cytokinesis 1 isoform 1 [Homo
sapiens]
Length = 620
Score = 29.3 bits (64), Expect = 9.1
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 171 KQAEEHLKSLVVETQDLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLR 230
K +E L ++ E + L +++S+S+C K + + + LE LR
Sbjct: 45 KHIKELLDMMIAEEESLKERLIKSISVCQKELNTLCSELHVEPFQEEGETTILQLEKDLR 104
Query: 231 SRVPLCR 237
++V L R
Sbjct: 105 TQVELMR 111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,253,500
Number of Sequences: 37866
Number of extensions: 841784
Number of successful extensions: 1865
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1851
Number of HSP's gapped (non-prelim): 20
length of query: 518
length of database: 18,247,518
effective HSP length: 107
effective length of query: 411
effective length of database: 14,195,856
effective search space: 5834496816
effective search space used: 5834496816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.