Guide to the Human Genome
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Name: MDH1B Sequence: fasta or formatted (518aa) NCBI GI: 89886456
Description:

malate dehydrogenase 1B, NAD (soluble)

Referenced in:

TCA Cycle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         34           2
 C cysteine            1.4          7           1
 D aspartate           4.2         22           2
 E glutamate           8.5         44           3
 F phenylalanine       3.7         19           1
 G glycine             5.8         30           2
 H histidine           2.7         14           1
 I isoleucine          7.5         39           2
 K lysine              6.6         34           1
 L leucine            10.2         53           3
 M methionine          1.9         10           2
 N asparagine          4.1         21           2
 P proline             4.2         22           2
 Q glutamine           3.5         18           1
 R arginine            4.2         22           1
 S serine              6.0         31           2
 T threonine           5.8         30           3
 V valine              7.7         40           2
 W tryptophan          1.9         10           1
 Y tyrosine            3.5         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   malate dehydrogenase 1B, NAD (soluble) 
MDH1                  0.109   cytosolic malate dehydrogenase 
ZNF239                0.007   zinc finger protein 239 
ZNF239                0.007   zinc finger protein 239 
ZNF239                0.007   zinc finger protein 239 
ZNF239                0.007   zinc finger protein 239 
DMGDH                 0.006   dimethylglycine dehydrogenase precursor 
HELB                  0.005   helicase (DNA) B 
SPG11                 0.005   spatacsin isoform 2 
SPG11                 0.005   spatacsin isoform 1 
PRC1                  0.004   protein regulator of cytokinesis 1 isoform 3 
PRC1                  0.004   protein regulator of cytokinesis 1 isoform 2 
PRC1                  0.004   protein regulator of cytokinesis 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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