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Search of human proteins with 8923415
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo
sapiens]
(278 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens] 572 e-163
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 48 8e-06
gi|50539414 cellular modulator of immune recognition isoform 7 [... 45 5e-05
gi|50539412 cellular modulator of immune recognition isoform 6 [... 45 5e-05
gi|50539410 cellular modulator of immune recognition isoform 8 [... 45 5e-05
gi|8923613 membrane-associated RING-CH protein I [Homo sapiens] 44 2e-04
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 44 2e-04
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 43 3e-04
gi|12383066 axotrophin [Homo sapiens] 40 0.003
gi|154937342 ring finger protein 190 [Homo sapiens] 35 0.055
gi|154937340 ring finger protein 190 [Homo sapiens] 35 0.055
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi... 35 0.094
gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2 ... 33 0.27
gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 33 0.27
gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 33 0.27
gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo sapi... 32 0.47
gi|27477134 nucleoporin 210 [Homo sapiens] 32 0.47
gi|89363020 nuclear transcription factor, X-box binding-like 1 [... 30 3.0
gi|238550100 transmembrane channel-like 7 isoform b [Homo sapiens] 28 8.8
gi|238550098 transmembrane channel-like 7 isoform a [Homo sapiens] 28 8.8
>gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens]
Length = 278
Score = 572 bits (1473), Expect = e-163
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MPDQALQQMLDRSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNST 60
MPDQALQQMLDRSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNST
Sbjct: 1 MPDQALQQMLDRSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNST 60
Query: 61 ARVACPQCNAEYLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVT 120
ARVACPQCNAEYLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVT
Sbjct: 61 ARVACPQCNAEYLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVT 120
Query: 121 VMQVVGHKEGLDVMERADPLFLLIGLPTIPVMLILGKMIRWEDYVLRLWRKYSNKLQILN 180
VMQVVGHKEGLDVMERADPLFLLIGLPTIPVMLILGKMIRWEDYVLRLWRKYSNKLQILN
Sbjct: 121 VMQVVGHKEGLDVMERADPLFLLIGLPTIPVMLILGKMIRWEDYVLRLWRKYSNKLQILN 180
Query: 181 SIFPGIGCPVPRIPAEANPLADHVSATRILCGALVFPTIATIVGKLMFSSVNSNLQRTIL 240
SIFPGIGCPVPRIPAEANPLADHVSATRILCGALVFPTIATIVGKLMFSSVNSNLQRTIL
Sbjct: 181 SIFPGIGCPVPRIPAEANPLADHVSATRILCGALVFPTIATIVGKLMFSSVNSNLQRTIL 240
Query: 241 GGIAFVAIKGAFKVYFKQQQYLRQAHRKILNYPEQEEA 278
GGIAFVAIKGAFKVYFKQQQYLRQAHRKILNYPEQEEA
Sbjct: 241 GGIAFVAIKGAFKVYFKQQQYLRQAHRKILNYPEQEEA 278
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 48.1 bits (113), Expect = 8e-06
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73
C +CF E E + PCRC GS ++ HQ CL +W+ E RG+ T C C Y
Sbjct: 170 CKICFQGAEQ---GELLNPCRCDGSVRYTHQLCLLKWISE--RGSWT----CELCCYRYH 220
Query: 74 IVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTA 113
++ K+ ++ L+ K A +++GS++ A
Sbjct: 221 VIAIKMKQPCQWQSISITLVEKVQMIA---VILGSLFLIA 257
>gi|50539414 cellular modulator of immune recognition isoform 7
[Homo sapiens]
Length = 291
Score = 45.4 bits (106), Expect = 5e-05
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73
C +C +D+ + + PC C GS +VHQACLQ+W+ S+ C C E+
Sbjct: 80 CRICHCEGDDE--SPLITPCHCTGSLHFVHQACLQQWI------KSSDTRCCELCKYEF- 130
Query: 74 IVFPKLGPV 82
I+ KL P+
Sbjct: 131 IMETKLKPL 139
>gi|50539412 cellular modulator of immune recognition isoform 6
[Homo sapiens]
Length = 291
Score = 45.4 bits (106), Expect = 5e-05
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73
C +C +D+ + + PC C GS +VHQACLQ+W+ S+ C C E+
Sbjct: 80 CRICHCEGDDE--SPLITPCHCTGSLHFVHQACLQQWI------KSSDTRCCELCKYEF- 130
Query: 74 IVFPKLGPV 82
I+ KL P+
Sbjct: 131 IMETKLKPL 139
>gi|50539410 cellular modulator of immune recognition isoform 8
[Homo sapiens]
Length = 291
Score = 45.4 bits (106), Expect = 5e-05
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73
C +C +D+ + + PC C GS +VHQACLQ+W+ S+ C C E+
Sbjct: 80 CRICHCEGDDE--SPLITPCHCTGSLHFVHQACLQQWI------KSSDTRCCELCKYEF- 130
Query: 74 IVFPKLGPV 82
I+ KL P+
Sbjct: 131 IMETKLKPL 139
>gi|8923613 membrane-associated RING-CH protein I [Homo sapiens]
Length = 272
Score = 43.5 bits (101), Expect = 2e-04
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73
C +C E D + + PCRC G+ ++VHQ+CL +W+ S+ C C ++
Sbjct: 63 CRICHC--EGDEESPLITPCRCTGTLRFVHQSCLHQWI------KSSDTRCCELCKYDF- 113
Query: 74 IVFPKLGPV 82
I+ KL P+
Sbjct: 114 IMETKLKPL 122
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 43.5 bits (101), Expect = 2e-04
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73
C +CF E E + PCRC GS + HQ CL RW+ E+ +C C +Y
Sbjct: 110 CRICFQGPEQ---GELLSPCRCDGSVRCTHQPCLIRWISER------GSWSCELCYFKYQ 160
Query: 74 IV 75
++
Sbjct: 161 VL 162
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 43.1 bits (100), Expect = 3e-04
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEK 54
C +CF E E + PCRC GS K HQ CL +W+ E+
Sbjct: 163 CRICFQGPEQ---GELLSPCRCDGSVKCTHQPCLIKWISER 200
>gi|12383066 axotrophin [Homo sapiens]
Length = 704
Score = 39.7 bits (91), Expect = 0.003
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 30 VRPCRCRGSTKWVHQACLQRWVDEKQRGNST--ARVACPQC 68
+ PC+C GS ++VHQ C+++W+ K S+ A C C
Sbjct: 567 IEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELC 607
>gi|154937342 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 35.4 bits (80), Expect = 0.055
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 30 VRPCRCRGSTKWVHQACLQRWVDEKQRGNST--ARVACPQCNAEYLI 74
+ PC C GS ++VHQ CL++W+ K + A C C L+
Sbjct: 674 LEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQGLLV 720
>gi|154937340 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 35.4 bits (80), Expect = 0.055
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 30 VRPCRCRGSTKWVHQACLQRWVDEKQRGNST--ARVACPQCNAEYLI 74
+ PC C GS ++VHQ CL++W+ K + A C C L+
Sbjct: 674 LEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQGLLV 720
>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
Length = 910
Score = 34.7 bits (78), Expect = 0.094
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQR 56
C VC + ++ PC C GS K++HQ CL +W+ ++
Sbjct: 9 CRVCRSEGTPEKPL--YHPCVCTGSIKFIHQECLVQWLKHSRK 49
>gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2
[Homo sapiens]
Length = 176
Score = 33.1 bits (74), Expect = 0.27
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 32 PCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYLI 74
PC C G+ VH++CL++W+ +S+ C C+ E+ +
Sbjct: 79 PCGCTGTLGAVHKSCLEKWL------SSSNTSYCELCHTEFAV 115
>gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 33.1 bits (74), Expect = 0.27
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 32 PCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYLI 74
PC C G+ VH++CL++W+ +S+ C C+ E+ +
Sbjct: 79 PCGCTGTLGAVHKSCLEKWL------SSSNTSYCELCHTEFAV 115
>gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 33.1 bits (74), Expect = 0.27
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 32 PCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYLI 74
PC C G+ VH++CL++W+ +S+ C C+ E+ +
Sbjct: 79 PCGCTGTLGAVHKSCLEKWL------SSSNTSYCELCHTEFAV 115
>gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo
sapiens]
Length = 253
Score = 32.3 bits (72), Expect = 0.47
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 16 VCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYLI 74
+C E + + PC C G+ +H++CL+ W+ +S+ C C+ + +
Sbjct: 70 MCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWL------SSSNTSYCELCHFRFAV 122
>gi|27477134 nucleoporin 210 [Homo sapiens]
Length = 1887
Score = 32.3 bits (72), Expect = 0.47
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 176 LQILNSIFPGIG--CPVPRIPAEANPLADHVSATRILCGALVFPTIATIVGKLMFSSVNS 233
L++ ++ PG+ P+P + A + L+ + +LC A V ++ + G SS NS
Sbjct: 1456 LRVWDAEHPGLSDFMPLPVLQAISPELSGAMVVGDVLCLATVLTSLEGLSGTWS-SSANS 1514
Query: 234 NLQRTILGGIAFVAIKGAFKVYFKQQQYLRQAHRKILNYPEQ 275
L G+A G+ VY++ +LR +++ P++
Sbjct: 1515 ILHIDPKTGVAVARAVGSVTVYYEVAGHLRTYKEVVVSVPQR 1556
>gi|89363020 nuclear transcription factor, X-box binding-like 1
[Homo sapiens]
Length = 911
Score = 29.6 bits (65), Expect = 3.0
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 15/70 (21%)
Query: 13 SCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQ----------RGNSTAR 62
+C +C A+ + ++ A W C G H C+Q+W + Q G
Sbjct: 159 TCLICIASVKRNQ-AVW----SCSGCFCIFHMPCIQKWAKDSQFLVSSVTDDDFGKKDCP 213
Query: 63 VACPQCNAEY 72
CP+C EY
Sbjct: 214 WPCPKCRFEY 223
>gi|238550100 transmembrane channel-like 7 isoform b [Homo sapiens]
Length = 613
Score = 28.1 bits (61), Expect = 8.8
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 21/147 (14%)
Query: 91 RLISKACPFAAAGIMVGSIYWTAVTYGAVTVMQVVGHKEGLDVMERADPLFLLIGLPTIP 150
RL A G +IY TV K+ +D M + LF+L LP+I
Sbjct: 252 RLFLNCIVLAVLGACFYAIY-------VATVFSQEHMKKEIDKMVFGENLFILY-LPSIV 303
Query: 151 VML-------ILGKMIRWEDYVLRLWRKYSNKLQILNSIFPGIGCPVPRIPAEANPLADH 203
+ L I K+IR+EDY + +L IL +F + + + +
Sbjct: 304 ITLANFITPMIFAKIIRYEDYS----PGFEIRLTILRCVFMRLATICVLVFTLGSKITSC 359
Query: 204 VSATRILCG--ALVFPTIATIVGKLMF 228
T LCG ++P T VG+ M+
Sbjct: 360 DDDTCDLCGYNQKLYPCWETQVGQEMY 386
>gi|238550098 transmembrane channel-like 7 isoform a [Homo sapiens]
Length = 723
Score = 28.1 bits (61), Expect = 8.8
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 21/147 (14%)
Query: 91 RLISKACPFAAAGIMVGSIYWTAVTYGAVTVMQVVGHKEGLDVMERADPLFLLIGLPTIP 150
RL A G +IY TV K+ +D M + LF+L LP+I
Sbjct: 362 RLFLNCIVLAVLGACFYAIY-------VATVFSQEHMKKEIDKMVFGENLFILY-LPSIV 413
Query: 151 VML-------ILGKMIRWEDYVLRLWRKYSNKLQILNSIFPGIGCPVPRIPAEANPLADH 203
+ L I K+IR+EDY + +L IL +F + + + +
Sbjct: 414 ITLANFITPMIFAKIIRYEDYS----PGFEIRLTILRCVFMRLATICVLVFTLGSKITSC 469
Query: 204 VSATRILCG--ALVFPTIATIVGKLMF 228
T LCG ++P T VG+ M+
Sbjct: 470 DDDTCDLCGYNQKLYPCWETQVGQEMY 496
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,326,046
Number of Sequences: 37866
Number of extensions: 415840
Number of successful extensions: 1327
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1311
Number of HSP's gapped (non-prelim): 20
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.