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Search of human proteins with 8922794
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8922794 U3 snoRNP protein 3 homolog [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8922794 U3 snoRNP protein 3 homolog [Homo sapiens] 367 e-102
gi|14141193 ribosomal protein S9 [Homo sapiens] 59 2e-09
gi|118918405 SAC3 domain containing 1 [Homo sapiens] 35 0.048
gi|156104874 envoplakin [Homo sapiens] 30 0.90
gi|24308223 hypothetical protein LOC57577 [Homo sapiens] 30 0.90
gi|113722133 senataxin [Homo sapiens] 30 1.5
gi|4505047 lumican precursor [Homo sapiens] 30 1.5
gi|126362971 serine/threonine kinase 10 [Homo sapiens] 30 1.5
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 29 2.6
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 29 2.6
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 29 2.6
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 29 2.6
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 29 2.6
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 29 2.6
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 29 2.6
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 29 2.6
gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled... 28 3.4
gi|167466278 solute carrier family 5 (iodide transporter), membe... 28 5.8
gi|191252785 centrobin, centrosomal BRCA2 interacting protein is... 27 7.6
gi|80861396 centrobin, centrosomal BRCA2 interacting protein iso... 27 7.6
>gi|8922794 U3 snoRNP protein 3 homolog [Homo sapiens]
Length = 184
Score = 367 bits (941), Expect = e-102
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120
RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM
Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
Query: 181 DLEA 184
DLEA
Sbjct: 181 DLEA 184
>gi|14141193 ribosomal protein S9 [Homo sapiens]
Length = 194
Score = 59.3 bits (142), Expect = 2e-09
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV 89
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L +G++
Sbjct: 28 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 87
Query: 90 PTRGSLELCDFVTA---SSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDP 146
G ++L D++ F RRL T + KL +A+ + A + Q H+RV VV P
Sbjct: 88 D-EGKMKL-DYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 145
Query: 147 AFLV 150
+F+V
Sbjct: 146 SFIV 149
>gi|118918405 SAC3 domain containing 1 [Homo sapiens]
Length = 358
Score = 34.7 bits (78), Expect = 0.048
Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 25 DHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKL- 83
+H LH L V+ R +D R + RAV+E +R P ++R + LL +
Sbjct: 26 EHRLHRLEVVPGCR----QDPPRADP-QRAVKEYSRPAAGKPRPPPSQLRPPSVLLATVR 80
Query: 84 YALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM--------AQHLQAAVAFVEQGH 135
Y G V + + +SF RL VLL L + A L+AA+A +
Sbjct: 81 YLAGEVAESADIARAE---VASFVADRLRAVLLDLALQGAGDAEAAVVLEAALATLLTVV 137
Query: 136 VRVGPDVV---TDPAFLVTRSMEDF 157
R+GPD DP L + E F
Sbjct: 138 ARLGPDAARGPADPVLLQAQVQEGF 162
>gi|156104874 envoplakin [Homo sapiens]
Length = 2033
Score = 30.4 bits (67), Expect = 0.90
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 3 RKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRL 62
R++ E+ ++K+V + NL ++ + RLQ ED R Q AV +L R+
Sbjct: 1066 REVDVKEKVVVKEV-----VKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARI 1120
Query: 63 RDL 65
DL
Sbjct: 1121 EDL 1123
>gi|24308223 hypothetical protein LOC57577 [Homo sapiens]
Length = 936
Score = 30.4 bits (67), Expect = 0.90
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 8 HEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPE 67
H KL K +W++ +L+VLR +R DYTR+ +L R + L LR+
Sbjct: 340 HRIKLGKAGTLSDWKI------QLKVLRAWR-----DYTRFQKLERETQALENDLREENR 388
Query: 68 RDQ 70
+ Q
Sbjct: 389 KQQ 391
>gi|113722133 senataxin [Homo sapiens]
Length = 2677
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/70 (22%), Positives = 39/70 (55%)
Query: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
M ++L H Q + K+ +FL++++ + + +QR+E +++S+ +ELA
Sbjct: 2069 MKKELPSHVQAMHKRKEFLDYQLDELSRQRALCRGGREIQRQELDENISKVSKERQELAS 2128
Query: 61 RLRDLPERDQ 70
+++++ R Q
Sbjct: 2129 KIKEVQGRPQ 2138
>gi|4505047 lumican precursor [Homo sapiens]
Length = 338
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 9 EQKLLKQVDFLNWEVTDHNLHEL-----RVLRRYRLQRREDYTRYNQLSRAVRELARRLR 63
++K + V L W + DHNL E RV + + Q ++ + +N L+ +V L + L
Sbjct: 82 DEKAFENVTDLQWLILDHNLLENSKIKGRVFSKLK-QLKKLHINHNNLTESVGPLPKSLE 140
Query: 64 DL 65
DL
Sbjct: 141 DL 142
>gi|126362971 serine/threonine kinase 10 [Homo sapiens]
Length = 968
Score = 29.6 bits (65), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 25 DHNLHELRVLRRYRLQRREDYTRY-NQLSRAVRELARRLRDLPERDQ 70
DH + RR RL++ DYTR+ QL +E+ + LP + +
Sbjct: 630 DHAVRRREEARRIRLEQDRDYTRFQEQLKLMKKEVKNEVEKLPRQQR 676
Score = 26.9 bits (58), Expect = 9.9
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 18/75 (24%)
Query: 3 RKLKFHEQKLLKQVDFLNWEVTDHNLHELRVL------RRYRLQR----------REDYT 46
R+ +Q+LL+ + WE+ +H L E L +Y LQR RE
Sbjct: 726 RECLMKKQELLRDREAALWEMEEHQLQERHQLVKQQLKDQYFLQRHELLRKHEKEREQMQ 785
Query: 47 RYNQLSRAVRELARR 61
RYNQ R + +L R
Sbjct: 786 RYNQ--RMIEQLKVR 798
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 53 RAVRELARRLRDLPERDQFRVRASA--ALLDKLYALG 87
RA+ E A+R R L E D R RA A L +KL A+G
Sbjct: 1807 RALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAIG 1843
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 53 RAVRELARRLRDLPERDQFRVRASA--ALLDKLYALG 87
RA+ E A+R R L E D R RA A L +KL A+G
Sbjct: 1811 RALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAIG 1847
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 53 RAVRELARRLRDLPERDQFRVRASA--ALLDKLYALG 87
RA+ E A+R R L E D R RA A L +KL A+G
Sbjct: 1807 RALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAIG 1843
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 53 RAVRELARRLRDLPERDQFRVRASA--ALLDKLYALG 87
RA+ E A+R R L E D R RA A L +KL A+G
Sbjct: 1775 RALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAIG 1811
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 53 RAVRELARRLRDLPERDQFRVRASA--ALLDKLYALG 87
RA+ E A+R R L E D R RA A L +KL A+G
Sbjct: 1944 RALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAIG 1980
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 53 RAVRELARRLRDLPERDQFRVRASA--ALLDKLYALG 87
RA+ E A+R R L E D R RA A L +KL A+G
Sbjct: 1785 RALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAIG 1821
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 53 RAVRELARRLRDLPERDQFRVRASA--ALLDKLYALG 87
RA+ E A+R R L E D R RA A L +KL A+G
Sbjct: 1793 RALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAIG 1829
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 28.9 bits (63), Expect = 2.6
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 53 RAVRELARRLRDLPERDQFRVRASA--ALLDKLYALG 87
RA+ E A+R R L E D R RA A L +KL A+G
Sbjct: 1834 RALAEEAKRQRQLAEEDAARQRAEAERVLAEKLAAIG 1870
>gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 2 [Homo sapiens]
Length = 1990
Score = 28.5 bits (62), Expect = 3.4
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 52 SRAVRELARRLRDLPERDQFRV-RASAALLDKLY---ALGLVPTRGSLELC 98
S E+ L DLPE+D+ V RA D L+ AL RG LE+C
Sbjct: 1000 SMGYTEIVSYLLDLPEKDEEEVERAQINSFDSLWGETALTAAAGRGKLEVC 1050
>gi|167466278 solute carrier family 5 (iodide transporter), member 8
[Homo sapiens]
Length = 610
Score = 27.7 bits (60), Expect = 5.8
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 145 DPAFLVTRSMEDFVTWVDSSKIKRHVLEY 173
DP +++T+ EDF++ D K K+HVL Y
Sbjct: 551 DPRYILTK--EDFLSNFDIFKKKKHVLSY 577
>gi|191252785 centrobin, centrosomal BRCA2 interacting protein
isoform alpha [Homo sapiens]
Length = 903
Score = 27.3 bits (59), Expect = 7.6
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 8 HEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPE 67
H+Q+L Q+ E+ + + +V Y L+ + R +L ++L + +L E
Sbjct: 492 HQQELASQLAQFKVEMAEREERQQQVAEDYELRLAREQARVCELQSGNQQLEEQRVELVE 551
Query: 68 RDQFRVRASAALLDKLYALGLVP 90
R Q ++A ++L + L P
Sbjct: 552 RLQAMLQAHWDEANQLLSTTLPP 574
>gi|80861396 centrobin, centrosomal BRCA2 interacting protein
isoform beta [Homo sapiens]
Length = 925
Score = 27.3 bits (59), Expect = 7.6
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 8 HEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPE 67
H+Q+L Q+ E+ + + +V Y L+ + R +L ++L + +L E
Sbjct: 492 HQQELASQLAQFKVEMAEREERQQQVAEDYELRLAREQARVCELQSGNQQLEEQRVELVE 551
Query: 68 RDQFRVRASAALLDKLYALGLVP 90
R Q ++A ++L + L P
Sbjct: 552 RLQAMLQAHWDEANQLLSTTLPP 574
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,142,775
Number of Sequences: 37866
Number of extensions: 226723
Number of successful extensions: 824
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 25
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.