Guide to the Human Genome
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Name: IMP3 Sequence: fasta or formatted (184aa) NCBI GI: 8922794
Description:

U3 snoRNP protein 3 homolog

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         13           2
 C cysteine            1.1          2           1
 D aspartate           7.6         14           2
 E glutamate           7.1         13           2
 F phenylalanine       4.9          9           1
 G glycine             2.2          4           1
 H histidine           3.3          6           1
 I isoleucine          0.5          1           1
 K lysine              4.3          8           1
 L leucine            14.7         27           2
 M methionine          1.6          3           1
 N asparagine          2.2          4           1
 P proline             2.7          5           1
 Q glutamine           4.3          8           1
 R arginine           13.6         25           3
 S serine              4.3          8           2
 T threonine           4.3          8           1
 V valine             10.3         19           2
 W tryptophan          1.1          2           1
 Y tyrosine            2.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   U3 snoRNP protein 3 homolog 
RPS9                  0.099   ribosomal protein S9 
SAC3D1                0.029   SAC3 domain containing 1 
EVPL                  0.015   envoplakin 
KIAA1407              0.015   hypothetical protein LOC57577 
SETX                  0.015   senataxin 
LUM                   0.015   lumican precursor 
STK10                 0.015   serine/threonine kinase 10 
PLEC1                 0.012   plectin 1 isoform 11 
PLEC1                 0.012   plectin 1 isoform 10 
PLEC1                 0.012   plectin 1 isoform 8 
PLEC1                 0.012   plectin 1 isoform 7 
PLEC1                 0.012   plectin 1 isoform 6 
PLEC1                 0.012   plectin 1 isoform 3 
PLEC1                 0.012   plectin 1 isoform 2 
PLEC1                 0.012   plectin 1 isoform 1 
TANC2                 0.009   tetratricopeptide repeat, ankyrin repeat and coiled...
SLC5A8                0.009   solute carrier family 5 (iodide transporter), membe...
CNTROB                0.006   centrobin, centrosomal BRCA2 interacting protein is...
CNTROB                0.006   centrobin, centrosomal BRCA2 interacting protein iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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