Guide to the Human Genome
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Name: ARMC1 Sequence: fasta or formatted (282aa) NCBI GI: 8922479
Description:

armadillo repeat-containing protein

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         24           2
 C cysteine            1.4          4           1
 D aspartate           5.7         16           2
 E glutamate           7.4         21           2
 F phenylalanine       3.2          9           2
 G glycine             4.6         13           2
 H histidine           1.4          4           1
 I isoleucine          3.5         10           1
 K lysine              5.3         15           1
 L leucine            10.6         30           2
 M methionine          3.9         11           2
 N asparagine          4.6         13           1
 P proline             4.6         13           2
 Q glutamine           5.0         14           2
 R arginine            6.0         17           3
 S serine              9.2         26           2
 T threonine           5.7         16           3
 V valine              7.1         20           2
 W tryptophan          0.7          2           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   armadillo repeat-containing protein 
API5                  0.011   apoptosis inhibitor 5 isoform c 
MAP3K1                0.011   mitogen-activated protein kinase kinase kinase 1 [H...
LOC100292655          0.011   PREDICTED: similar to armadillo repeat containing, ...
APC                   0.009   adenomatous polyposis coli 
APC                   0.009   adenomatous polyposis coli 
APC                   0.009   adenomatous polyposis coli 
MLL                   0.009   myeloid/lymphoid or mixed-lineage leukemia protein [...
SETD5                 0.009   SET domain containing 5 
STK31                 0.009   serine/threonine kinase 31 isoform b 
STK31                 0.009   serine/threonine kinase 31 isoform a 
STK31                 0.009   serine/threonine kinase 31 isoform b 
API5                  0.008   apoptosis inhibitor 5 isoform a 
API5                  0.008   apoptosis inhibitor 5 isoform b 
SPAG6                 0.006   sperm associated antigen 6 isoform 1 
SPAG6                 0.006   sperm associated antigen 6 isoform 2 
CEP192                0.006   centrosomal protein 192kDa 
SETX                  0.006   senataxin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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