Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF550 Sequence: fasta or formatted (381aa) NCBI GI: 89001096
Description:

zinc finger protein 550

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         19           1
 C cysteine            5.0         19           1
 D aspartate           3.1         12           2
 E glutamate           8.1         31           2
 F phenylalanine       3.4         13           1
 G glycine             7.1         27           1
 H histidine           7.1         27           2
 I isoleucine          3.4         13           2
 K lysine              7.3         28           1
 L leucine             8.9         34           2
 M methionine          1.8          7           1
 N asparagine          1.3          5           1
 P proline             3.7         14           2
 Q glutamine           5.0         19           2
 R arginine            7.6         29           2
 S serine              6.3         24           2
 T threonine           7.6         29           2
 V valine              3.7         14           1
 W tryptophan          0.8          3           1
 Y tyrosine            3.7         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 550 
ZNF805                0.557   zinc finger protein 805 isoform 1 
ZNF543                0.550   zinc finger protein 543 
ZNF264                0.537   zinc finger protein 264 
ZNF599                0.529   zinc finger protein 599 
ZNF460                0.471   zinc finger protein 460 
ZNF805                0.452   zinc finger protein 805 isoform 2 
ZNF420                0.427   zinc finger protein 420 
ZNF189                0.422   zinc finger protein 189 isoform 1 
ZNF3                  0.417   zinc finger protein 3 isoform 2 
ZNF436                0.415   zinc finger protein 436 
ZNF436                0.415   zinc finger protein 436 
ZNF773                0.413   zinc finger protein 773 
ZNF383                0.398   zinc finger protein 383 
ZNF419                0.395   zinc finger protein 419 isoform 7 
ZNF419                0.395   zinc finger protein 419 isoform 6 
ZNF419                0.395   zinc finger protein 419 isoform 5 
ZNF454                0.394   zinc finger protein 454 
ZNF167                0.393   zinc finger protein 167 isoform 1 
ZNF250                0.393   zinc finger protein 250 isoform b 
ZNF250                0.393   zinc finger protein 250 isoform a 
ZNF570                0.392   zinc finger protein 570 
ZNF331                0.390   zinc finger protein 331 
ZNF331                0.390   zinc finger protein 331 
ZNF665                0.390   zinc finger protein 665 
ZNF331                0.390   zinc finger protein 331 
ZNF283                0.388   zinc finger protein 283 
ZNF34                 0.385   zinc finger protein 34 
ZNF852                0.384   PREDICTED: zinc finger protein 852 
ZNF485                0.383   zinc finger protein 485 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press