Search of human proteins with 88987392

Search of human proteins with 88987392

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|88987392 PREDICTED: similar to HIStone family member
(his-72) [Homo sapiens]
         (136 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169167761 PREDICTED: similar to HIStone family member (his-72...   268   8e-73
gi|88987392 PREDICTED: similar to HIStone family member (his-72)...   268   8e-73
gi|41147170 PREDICTED: similar to HIStone family member (his-72)...   268   8e-73
gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]          257   2e-69
gi|4885385 H3 histone, family 3B [Homo sapiens]                       218   9e-58
gi|4504279 H3 histone, family 3A [Homo sapiens]                       218   9e-58
gi|53793688 histone cluster 2, H3a [Homo sapiens]                     213   3e-56
gi|31742503 histone cluster 2, H3c [Homo sapiens]                     213   3e-56
gi|183076548 histone cluster 2, H3d [Homo sapiens]                    213   3e-56
gi|4504287 histone cluster 1, H3e [Homo sapiens]                      211   1e-55
gi|4504295 histone cluster 1, H3h [Homo sapiens]                      211   1e-55
gi|4504289 histone cluster 1, H3i [Homo sapiens]                      211   1e-55
gi|4504281 histone cluster 1, H3a [Homo sapiens]                      211   1e-55
gi|10440560 histone cluster 1, H3f [Homo sapiens]                     211   1e-55
gi|21071021 histone cluster 1, H3d [Homo sapiens]                     211   1e-55
gi|4504297 histone cluster 1, H3b [Homo sapiens]                      211   1e-55
gi|4504293 histone cluster 1, H3j [Homo sapiens]                      211   1e-55
gi|4504285 histone cluster 1, H3c [Homo sapiens]                      211   1e-55
gi|4504291 H3 histone family, member H [Homo sapiens]                 211   1e-55
gi|4504299 histone cluster 3, H3 [Homo sapiens]                       206   5e-54
gi|188528667 histone H3-like [Homo sapiens]                           204   1e-53
gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens]          193   4e-50
gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens]          193   4e-50
gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens]       179   5e-46
gi|4502775 centromere protein A isoform a [Homo sapiens]              104   3e-23
gi|109637779 centromere protein A isoform b [Homo sapiens]             80   7e-16
gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]    35   0.019
gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]    35   0.019
gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]    33   0.094
gi|126722969 centromere protein T [Homo sapiens]                       31   0.27 

>gi|169167761 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score =  268 bits (686), Expect = 8e-73
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI
Sbjct: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120

Query: 121 MPRDMQLARRLRREGP 136
           MPRDMQLARRLRREGP
Sbjct: 121 MPRDMQLARRLRREGP 136


>gi|88987392 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score =  268 bits (686), Expect = 8e-73
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI
Sbjct: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120

Query: 121 MPRDMQLARRLRREGP 136
           MPRDMQLARRLRREGP
Sbjct: 121 MPRDMQLARRLRREGP 136


>gi|41147170 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score =  268 bits (686), Expect = 8e-73
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI
Sbjct: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120

Query: 121 MPRDMQLARRLRREGP 136
           MPRDMQLARRLRREGP
Sbjct: 121 MPRDMQLARRLRREGP 136


>gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]
          Length = 147

 Score =  257 bits (656), Expect = 2e-69
 Identities = 132/135 (97%), Positives = 132/135 (97%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAA KRA PTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI
Sbjct: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120

Query: 121 MPRDMQLARRLRREG 135
           MPRDMQLARRLR EG
Sbjct: 121 MPRDMQLARRLRGEG 135


>gi|4885385 H3 histone, family 3B [Homo sapiens]
          Length = 136

 Score =  218 bits (556), Expect = 9e-58
 Identities = 110/134 (82%), Positives = 122/134 (91%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQSAAIGALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|4504279 H3 histone, family 3A [Homo sapiens]
          Length = 136

 Score =  218 bits (556), Expect = 9e-58
 Identities = 110/134 (82%), Positives = 122/134 (91%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQSAAIGALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|53793688 histone cluster 2, H3a [Homo sapiens]
          Length = 136

 Score =  213 bits (543), Expect = 3e-56
 Identities = 107/134 (79%), Positives = 121/134 (90%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|31742503 histone cluster 2, H3c [Homo sapiens]
          Length = 136

 Score =  213 bits (543), Expect = 3e-56
 Identities = 107/134 (79%), Positives = 121/134 (90%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|183076548 histone cluster 2, H3d [Homo sapiens]
          Length = 136

 Score =  213 bits (543), Expect = 3e-56
 Identities = 107/134 (79%), Positives = 121/134 (90%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|4504287 histone cluster 1, H3e [Homo sapiens]
          Length = 136

 Score =  211 bits (538), Expect = 1e-55
 Identities = 106/134 (79%), Positives = 120/134 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|4504295 histone cluster 1, H3h [Homo sapiens]
          Length = 136

 Score =  211 bits (538), Expect = 1e-55
 Identities = 106/134 (79%), Positives = 120/134 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|4504289 histone cluster 1, H3i [Homo sapiens]
          Length = 136

 Score =  211 bits (538), Expect = 1e-55
 Identities = 106/134 (79%), Positives = 120/134 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|4504281 histone cluster 1, H3a [Homo sapiens]
          Length = 136

 Score =  211 bits (538), Expect = 1e-55
 Identities = 106/134 (79%), Positives = 120/134 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|10440560 histone cluster 1, H3f [Homo sapiens]
          Length = 136

 Score =  211 bits (538), Expect = 1e-55
 Identities = 106/134 (79%), Positives = 120/134 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|21071021 histone cluster 1, H3d [Homo sapiens]
          Length = 136

 Score =  211 bits (538), Expect = 1e-55
 Identities = 106/134 (79%), Positives = 120/134 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|4504297 histone cluster 1, H3b [Homo sapiens]
          Length = 136

 Score =  211 bits (538), Expect = 1e-55
 Identities = 106/134 (79%), Positives = 120/134 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|4504293 histone cluster 1, H3j [Homo sapiens]
          Length = 136

 Score =  211 bits (538), Expect = 1e-55
 Identities = 106/134 (79%), Positives = 120/134 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|4504285 histone cluster 1, H3c [Homo sapiens]
          Length = 136

 Score =  211 bits (538), Expect = 1e-55
 Identities = 106/134 (79%), Positives = 120/134 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|4504291 H3 histone family, member H [Homo sapiens]
          Length = 136

 Score =  211 bits (538), Expect = 1e-55
 Identities = 106/134 (79%), Positives = 120/134 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|4504299 histone cluster 3, H3 [Homo sapiens]
          Length = 136

 Score =  206 bits (524), Expect = 5e-54
 Identities = 102/134 (76%), Positives = 118/134 (88%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATK A K AP TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRL+REIAQ    DLRFQS+A+ ALQEA E+YLV LFEDTNLC IHA+RVTI
Sbjct: 61  LLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTI 120

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 121 MPKDIQLARRIRGE 134


>gi|188528667 histone H3-like [Homo sapiens]
          Length = 135

 Score =  204 bits (520), Expect = 1e-53
 Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 1/134 (0%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAA K  P T G+K PHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ  + DLRFQSAA+GALQEASEAYLV L EDTNLCAIHA+RVTI
Sbjct: 60  LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119

Query: 121 MPRDMQLARRLRRE 134
           MP+D+QLARR+R E
Sbjct: 120 MPKDIQLARRIRGE 133


>gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens]
          Length = 193

 Score =  193 bits (490), Expect = 4e-50
 Identities = 99/101 (98%), Positives = 99/101 (98%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAA KRA PTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 46  MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 105

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 101
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL
Sbjct: 106 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 146


>gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens]
          Length = 193

 Score =  193 bits (490), Expect = 4e-50
 Identities = 99/101 (98%), Positives = 99/101 (98%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAA KRA PTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 46  MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 105

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 101
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL
Sbjct: 106 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 146


>gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens]
          Length = 141

 Score =  179 bits (455), Expect = 5e-46
 Identities = 88/118 (74%), Positives = 106/118 (89%)

Query: 15  QAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQLLLRKLPFQRLVRE 74
           +A RK L TKAA K AP TGG+KKPH Y+PGT+ALREIR+YQK+T+LL+RKL FQRLV+E
Sbjct: 20  KAARKQLGTKAAHKSAPSTGGVKKPHHYRPGTVALREIRRYQKATELLIRKLRFQRLVQE 79

Query: 75  IAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIMPRDMQLARRLR 132
           IAQ +  DLRFQSAAIGALQEASEAYLV LFED+NLCAIHA+R+TIMP+++QLARR++
Sbjct: 80  IAQDLKTDLRFQSAAIGALQEASEAYLVGLFEDSNLCAIHAKRLTIMPKEIQLARRIQ 137


>gi|4502775 centromere protein A isoform a [Homo sapiens]
          Length = 140

 Score =  104 bits (259), Expect = 3e-23
 Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 9/131 (6%)

Query: 9   RKATAWQAPRK----PLATKAAGKRAPPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63
           R++   +APR+    P  T    +R P  G     H R + G L  +EIRK QKST LL+
Sbjct: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62

Query: 64  RKLPFQRLVREIAQAISP--DLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121
           RKLPF RL REI    +   D  +Q+ A+ ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122

Query: 122 PRDMQLARRLR 132
           P+D+QLARR+R
Sbjct: 123 PKDVQLARRIR 133


>gi|109637779 centromere protein A isoform b [Homo sapiens]
          Length = 114

 Score = 79.7 bits (195), Expect = 7e-16
 Identities = 53/129 (41%), Positives = 68/129 (52%), Gaps = 31/129 (24%)

Query: 9   RKATAWQAPRK----PLATKAAGKRAPPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63
           R++   +APR+    P  T    +R P  G     H R + G L  +EIRK QKST LL+
Sbjct: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62

Query: 64  RKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIMPR 123
           RKLPF RL                        A+EA+LV LFED  L  +HA RVT+ P+
Sbjct: 63  RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98

Query: 124 DMQLARRLR 132
           D+QLARR+R
Sbjct: 99  DVQLARRIR 107


>gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 257

 Score = 35.0 bits (79), Expect = 0.019
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 16/134 (11%)

Query: 2   ARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQL 61
           A ++ T+ +  + Q P++  +TKA  ++     G ++ H  + G         Y      
Sbjct: 113 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 166

Query: 62  LLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121
                 F R+++++ Q +S        A+  +       L ++  +    A + +RVTI 
Sbjct: 167 ------FPRVLKQVHQGLS----LSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 216

Query: 122 PRDMQLARRLRREG 135
            RD+Q+A RL   G
Sbjct: 217 SRDIQMAVRLLLPG 230


>gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 257

 Score = 35.0 bits (79), Expect = 0.019
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 16/134 (11%)

Query: 2   ARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQL 61
           A ++ T+ +  + Q P++  +TKA  ++     G ++ H  + G         Y      
Sbjct: 113 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 166

Query: 62  LLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121
                 F R+++++ Q +S        A+  +       L ++  +    A + +RVTI 
Sbjct: 167 ------FPRVLKQVHQGLS----LSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 216

Query: 122 PRDMQLARRLRREG 135
            RD+Q+A RL   G
Sbjct: 217 SRDIQMAVRLLLPG 230


>gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 248

 Score = 32.7 bits (73), Expect = 0.094
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 2   ARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQL 61
           A ++ T+ +  + Q P++  +TKA  ++     G ++ H  + G         Y      
Sbjct: 104 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 157

Query: 62  LLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121
                 F R+++++   +S        A+  +       L ++  +    A + +RVTI 
Sbjct: 158 ------FPRVLKQVHXGLS----LSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 207

Query: 122 PRDMQLARRLRREG 135
            RD+Q+A RL   G
Sbjct: 208 SRDIQMAVRLLLPG 221


>gi|126722969 centromere protein T [Homo sapiens]
          Length = 561

 Score = 31.2 bits (69), Expect = 0.27
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 89  AIGALQEASEAYLVQLFEDTNLCAIHARRVTIMPRDMQLARRLRREG 135
           A+  +++  + Y   L +D  + A HA R T+ P D++L   +RR+G
Sbjct: 479 ALEMVEKCLDKYFQHLCDDLEVFAAHAGRKTVKPEDLELL--MRRQG 523


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,852,034
Number of Sequences: 37866
Number of extensions: 185115
Number of successful extensions: 698
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 72
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.