Search of human proteins with 88950401

Search of human proteins with 88950401

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|88950401 PREDICTED: hypothetical protein [Homo sapiens]
         (120 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169160869 PREDICTED: hypothetical protein [Homo sapiens]           243   3e-65
gi|88950401 PREDICTED: hypothetical protein [Homo sapiens]            243   3e-65
gi|88942880 PREDICTED: hypothetical protein [Homo sapiens]            239   3e-64
gi|188536004 zinc finger protein 469 [Homo sapiens]                    38   0.002
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f...    35   0.017
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e...    35   0.017
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d...    35   0.017
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ...    35   0.017
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ...    35   0.017
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ...    35   0.017
gi|5730045 solute carrier family 16, member 2 [Homo sapiens]           34   0.022
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    33   0.050
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi...    33   0.050
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi...    33   0.050
gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens]          33   0.065
gi|116812624 tau tubulin kinase 2 [Homo sapiens]                       32   0.085
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        32   0.085
gi|239754514 PREDICTED: hypothetical protein [Homo sapiens]            32   0.11 
gi|10863889 squamous cell carcinoma antigen recognized by T cell...    32   0.11 
gi|6912458 calcineurin binding protein 1 [Homo sapiens]                32   0.11 
gi|5174419 caseinolytic peptidase, ATP-dependent, proteolytic su...    31   0.19 
gi|18079216 CASK interacting protein 1 [Homo sapiens]                  31   0.25 
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    31   0.25 
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...    31   0.25 
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]            31   0.25 
gi|167736355 mucin 4 isoform a [Homo sapiens]                          31   0.25 
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]             31   0.25 
gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo sapiens]     30   0.32 
gi|6466466 RAN binding protein 3 isoform RANBP3-d [Homo sapiens]       30   0.32 
gi|19924103 synapsin II isoform IIa [Homo sapiens]                     30   0.32 

>gi|169160869 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 120

 Score =  243 bits (619), Expect = 3e-65
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALS 60
           MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALS
Sbjct: 1   MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALS 60

Query: 61  LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120
           LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV
Sbjct: 61  LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120


>gi|88950401 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 120

 Score =  243 bits (619), Expect = 3e-65
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALS 60
           MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALS
Sbjct: 1   MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALS 60

Query: 61  LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120
           LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV
Sbjct: 61  LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120


>gi|88942880 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 120

 Score =  239 bits (610), Expect = 3e-64
 Identities = 119/120 (99%), Positives = 119/120 (99%)

Query: 1   MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALS 60
           MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEAR LAEPALS
Sbjct: 1   MGKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARRLAEPALS 60

Query: 61  LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120
           LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV
Sbjct: 61  LRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFNYYGAV 120


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 25/119 (21%)

Query: 10  GASGPASEVDGDANLRDATRSSEQRSFPLVE----------------AQAQAPPHGEARP 53
           GA G A +  G      A RSS+  S  L                  AQ Q  PHG    
Sbjct: 519 GALGTAGKTPGPREKLPAVRSSQGGSPALFTYNGMTDPGAQPLFFGVAQPQVSPHGT--- 575

Query: 54  LAEPALSLRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRP 112
              P+L   + + ASP   P+P+P  + +G +  S   L P     +  + EE+ +P P
Sbjct: 576 ---PSLPPPRVVGASPSESPLPSPATNTAGSTCSS---LSPMSSSPANPSSEESQLPGP 628


>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
           [Homo sapiens]
          Length = 1412

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 10  GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDASP 69
           G +GPA          + ++SS + S    EA AQA P G+A P    A +   P   SP
Sbjct: 315 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKA-PQVRAASA---PAKESP 370

Query: 70  RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
           R    PAP R     +A      +    RSS E  +
Sbjct: 371 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 406


>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
           [Homo sapiens]
          Length = 1451

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 10  GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDASP 69
           G +GPA          + ++SS + S    EA AQA P G+A P    A +   P   SP
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKA-PQVRAASA---PAKESP 447

Query: 70  RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
           R    PAP R     +A      +    RSS E  +
Sbjct: 448 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 483


>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
           [Homo sapiens]
          Length = 1488

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 10  GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDASP 69
           G +GPA          + ++SS + S    EA AQA P G+A P    A +   P   SP
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKA-PQVRAASA---PAKESP 447

Query: 70  RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
           R    PAP R     +A      +    RSS E  +
Sbjct: 448 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 483


>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
           [Homo sapiens]
          Length = 1411

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 10  GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDASP 69
           G +GPA          + ++SS + S    EA AQA P G+A P    A +   P   SP
Sbjct: 315 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKA-PQVRAASA---PAKESP 370

Query: 70  RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
           R    PAP R     +A      +    RSS E  +
Sbjct: 371 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 406


>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
           [Homo sapiens]
          Length = 1450

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 10  GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDASP 69
           G +GPA          + ++SS + S    EA AQA P G+A P    A +   P   SP
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKA-PQVRAASA---PAKESP 447

Query: 70  RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
           R    PAP R     +A      +    RSS E  +
Sbjct: 448 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 483


>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
           [Homo sapiens]
          Length = 958

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 10  GASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDASP 69
           G +GPA          + ++SS + S    EA AQA P G+A P    A +   P   SP
Sbjct: 392 GKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKA-PQVRAASA---PAKESP 447

Query: 70  RADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
           R    PAP R     +A      +    RSS E  +
Sbjct: 448 RKGAAPAPPRKTGPAAAQVQVGKQEEDSRSSSEESD 483


>gi|5730045 solute carrier family 16, member 2 [Homo sapiens]
          Length = 613

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 4   KERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEA-QAQAPPHGEARPLAEPALSLR 62
           K + +SG+SGP+S     A +   +++SE+   P  EA Q Q  P G   P +EP     
Sbjct: 56  KYQPQSGSSGPSSH-SPPAAMALQSQASEEAKGPWQEADQEQQEPVGSPEPESEP----- 109

Query: 63  QPIDASPRADPVPAP 77
              +  P  +PVP P
Sbjct: 110 ---EPEPEPEPVPVP 121


>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 855

 Score = 33.1 bits (74), Expect = 0.050
 Identities = 19/47 (40%), Positives = 21/47 (44%)

Query: 37  PLVEAQAQAPPHGEARPLAEPALSLRQPIDASPRADPVPAPDRSLSG 83
           PL     QAPP   A  L  P      P   +PR  P P PD S+SG
Sbjct: 554 PLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSG 600


>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
           sapiens]
          Length = 1124

 Score = 33.1 bits (74), Expect = 0.050
 Identities = 19/47 (40%), Positives = 21/47 (44%)

Query: 37  PLVEAQAQAPPHGEARPLAEPALSLRQPIDASPRADPVPAPDRSLSG 83
           PL     QAPP   A  L  P      P   +PR  P P PD S+SG
Sbjct: 823 PLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSG 869


>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
           sapiens]
          Length = 816

 Score = 33.1 bits (74), Expect = 0.050
 Identities = 19/47 (40%), Positives = 21/47 (44%)

Query: 37  PLVEAQAQAPPHGEARPLAEPALSLRQPIDASPRADPVPAPDRSLSG 83
           PL     QAPP   A  L  P      P   +PR  P P PD S+SG
Sbjct: 515 PLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSG 561


>gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens]
          Length = 735

 Score = 32.7 bits (73), Expect = 0.065
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 13/91 (14%)

Query: 9   SGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDAS 68
           +G   P+ E DGD    DA  SS     P  +A  + P    ARP  EP           
Sbjct: 105 AGTPSPSGEADGDCAPEDAAPSS--GGAPRQDAAREVPGSEAARPEQEP----------- 151

Query: 69  PRADPVPAPDRSLSGGSAHSGRFLKPRLRRS 99
           P A+PVP            SG   +P++ +S
Sbjct: 152 PVAEPVPVCTIFSQRAPPASGDGFEPQMVKS 182


>gi|116812624 tau tubulin kinase 2 [Homo sapiens]
          Length = 1244

 Score = 32.3 bits (72), Expect = 0.085
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 6    RRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPI 65
            RR        S+ D  + L    ++  Q+     + ++   PH    P   P +  R P 
Sbjct: 1093 RRYKVLGSSNSDSDLFSRLAQILQNGSQKPRSTTQCKSPGSPHNPKTPPKSPVVPRRSP- 1151

Query: 66   DASPRADPVP---APDRSLSGGSAHSGRFLKPRLRRS 99
             ASPR+  +P   +   S +G   H  R   P L RS
Sbjct: 1152 SASPRSSSLPRTSSSSPSRAGRPHHDQRSSSPHLGRS 1188


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 32.3 bits (72), Expect = 0.085
 Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 1/113 (0%)

Query: 3   KKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLR 62
           KK R  S  S   S     A  R + R S   S P  + ++Q PP       ++P    R
Sbjct: 750 KKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSR 809

Query: 63  QPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDEETTIPRPYFN 115
            P   S R+   P P +     S  S     P  +  SG    + +I  P  N
Sbjct: 810 TPPRRS-RSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQAN 861



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 7    RRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPID 66
            R+   SG + EVD  + L  + R S   S P V+ + +A P  ++   + P     +P  
Sbjct: 1574 RQRSRSGSSPEVDSKSRL--SPRRSRSGSSPEVKDKPRAAPRAQSGSDSSP-----EPKA 1626

Query: 67   ASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
             +PRA     P RS SG S+  GR   P    S+  + E
Sbjct: 1627 PAPRA----LPRRSRSGSSS-KGRGPSPEGSSSTESSPE 1660


>gi|239754514 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 260

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 64  PIDASPRADPVPAPDRSLSGGSAHSGRFLKPR------LRRSSGETDEE 106
           P   SPR  P P+PD S  GGSA       PR      L R  G T+ E
Sbjct: 11  PRSTSPRLQPPPSPDSSSRGGSARRRAAPAPRCPQRLGLLRPPGPTNSE 59


>gi|10863889 squamous cell carcinoma antigen recognized by T cells
          1 [Homo sapiens]
          Length = 800

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 3  KKERRRSGASGPASEVDGDANLRDATRSSEQRSFPL-VEAQAQAPPHGEARPLAEPA 58
          KK + RSG SG +    G+   R   R  E+ S     EA+A++  HG  R  AEP+
Sbjct: 36 KKHKHRSGGSGGSG---GERRKRSRERGGERGSGRRGAEAEARSSTHGRERSQAEPS 89


>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
          Length = 2220

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 2    GKKERRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARP----LAEP 57
            G+++ + S  +GP   +D   +      S  +R+ PL+  +       E+RP    L E 
Sbjct: 1745 GERKDKESPRAGPTEPMD--TSEATVCHSDLERTPPLLPGRPARDRGPESRPTELSLEEL 1802

Query: 58   ALSLRQPIDASPRADPVPAPDRSLSGGSAHSGRFLKPRLRRS 99
            ++S RQ       A P PAP  + + G+   G   +P  R S
Sbjct: 1803 SISARQQPTPLTPAQPAPAPAPATTTGTRAGGHPEEPLSRLS 1844



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 8    RSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARP------LAEPALSL 61
            + G   P    DG+A  ++A   ++  S P   A ++AP  G A+P        EP+ + 
Sbjct: 2068 QEGKLRPEPRRDGEA--QEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAK 2125

Query: 62   RQPIDASPR 70
             +P+   P+
Sbjct: 2126 SRPLPNMPK 2134


>gi|5174419 caseinolytic peptidase, ATP-dependent, proteolytic
           subunit precursor [Homo sapiens]
          Length = 277

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 32  EQRSFPLVEAQAQAPPH-GEARPLAEPALSLRQPIDASPRADPVPA 76
           E + F +++     PP  GE     EP L  ++P++A+P A+PVPA
Sbjct: 234 EAQEFGILDKVLVHPPQDGED----EPTLVQKEPVEAAPAAEPVPA 275


>gi|18079216 CASK interacting protein 1 [Homo sapiens]
          Length = 1431

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 14   PASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALS----LRQPI---- 65
            PASE  G   L      +E     L       PP GEAR  A+P +S    L QP+    
Sbjct: 1181 PASEQAGPPELPPPPPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQ 1240

Query: 66   -DASPRADPVPAP 77
               +P +  VP P
Sbjct: 1241 GSPTPTSKKVPLP 1253



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 9    SGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDAS 68
            SG++GP S     A    A  +    + P + A    PP   A  L  PA   R    A+
Sbjct: 1292 SGSAGP-SPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAA 1350

Query: 69   PRADPVPAPDRSLSGGSA 86
              A   PAP    S G +
Sbjct: 1351 AAAAAPPAPPEGASPGDS 1368


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 6   RRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLR 62
           R  SG SGP S   G   +      +  +  PL   + +A P   ARP   P L L+
Sbjct: 152 RAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLK 208



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 29  RSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDASPRADPVPAPDRSLSGGSAHS 88
           R S+ +S   +   A  P  G +   A PA        A+P+A    AP R+ SGGS   
Sbjct: 109 RPSQHQSGSRLRPAAPGPRPGCSSARASPA-------PAAPQAAARTAPGRAASGGSGPG 161

Query: 89  GR 90
            R
Sbjct: 162 SR 163


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 6   RRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLR 62
           R  SG SGP S   G   +      +  +  PL   + +A P   ARP   P L L+
Sbjct: 152 RAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLK 208



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 29  RSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDASPRADPVPAPDRSLSGGSAHS 88
           R S+ +S   +   A  P  G +   A PA        A+P+A    AP R+ SGGS   
Sbjct: 109 RPSQHQSGSRLRPAAPGPRPGCSSARASPA-------PAAPQAAARTAPGRAASGGSGPG 161

Query: 89  GR 90
            R
Sbjct: 162 SR 163


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 6   RRRSGASGPASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLR 62
           R  SG SGP S   G   +      +  +  PL   + +A P   ARP   P L L+
Sbjct: 152 RAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLK 208



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 29  RSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDASPRADPVPAPDRSLSGGSAHS 88
           R S+ +S   +   A  P  G +   A PA        A+P+A    AP R+ SGGS   
Sbjct: 109 RPSQHQSGSRLRPAAPGPRPGCSSARASPA-------PAAPQAAARTAPGRAASGGSGPG 161

Query: 89  GR 90
            R
Sbjct: 162 SR 163


>gi|167736355 mucin 4 isoform a [Homo sapiens]
          Length = 5284

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 12   SGPASEVDGDAN---LRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDAS 68
            + P+S   GD     + DA+  S   + PL    A +   G+A PL   +LS     D +
Sbjct: 1332 TSPSSASTGDTTPLPVTDASSVSTGHTTPLHVTDASSASTGQATPLPVTSLSSVSTGDTT 1391

Query: 69   PRADPVPAPDRSLSG----------GSAHSGRFLK-PRLRRSSGETDEETTIP 110
            P   PV +P  + +G           SA +G     P    SS  TD  T++P
Sbjct: 1392 PL--PVTSPSSASTGHATPLLVTDTSSASTGHATPLPVTDASSVSTDHATSLP 1442



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 30   SSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDASPRADPVPAPDRSLSGGSAHSG 89
            +S   + PL+   A +   G+A PL   +LS     D +P   PV +P  S S G A S 
Sbjct: 3065 ASTGHATPLLVTDASSASTGQATPLPVTSLSSVSTGDTTPL--PVTSPS-SASTGHATS- 3120

Query: 90   RFLKPRLRRSSGETDEETTIP 110
                P    SS  T + T++P
Sbjct: 3121 ---LPVTDTSSASTGDTTSLP 3138


>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
          Length = 1316

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 25  RDATRSSEQRSFPLVEAQAQAP-----PHGEARPLAEPALSLRQPIDASPRAD-PVPAPD 78
           RDA   S+    P    +  AP     P G     AEP+   R    A+P+A  P PA +
Sbjct: 881 RDAQDPSQSLGAPEAAERPPAPVLDMAPAGHPEGDAEPSPGERVEDAAAPKAPGPSPAKE 940

Query: 79  RSLSGGSAHSGRFLKPRLRRSSGETDEET 107
           +  S      G +   R R SSGE   E+
Sbjct: 941 KIGSLRKVDRGHYRSRRERSSSGEPARES 969


>gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo
          sapiens]
          Length = 562

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 9/54 (16%)

Query: 42 QAQAPPHGEARP--LAEPALSLRQPIDASPRADPVPAPD-------RSLSGGSA 86
          +A+AP HG   P    E AL    P  AS    P PAP+       R L+G SA
Sbjct: 44 EAEAPHHGTGHPESAGEHALEPPAPAGASASTPPPPAPEAQLPPFPRELAGRSA 97


>gi|6466466 RAN binding protein 3 isoform RANBP3-d [Homo sapiens]
          Length = 567

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 9/54 (16%)

Query: 42 QAQAPPHGEARP--LAEPALSLRQPIDASPRADPVPAPD-------RSLSGGSA 86
          +A+AP HG   P    E AL    P  AS    P PAP+       R L+G SA
Sbjct: 44 EAEAPHHGTGHPESAGEHALEPPAPAGASASTPPPPAPEAQLPPFPRELAGRSA 97


>gi|19924103 synapsin II isoform IIa [Homo sapiens]
          Length = 582

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 14  PASEVDGDANLRDATRSSEQRSFPLVEAQAQAPPHGEARPLAEPALSLRQPIDASPRADP 73
           P   +    +L  ++ SS   S    +       HG+A P +  +L+  QP  A+P   P
Sbjct: 473 PPRRLPPGPSLPPSSSSSSSSSSSAPQRPGGPTTHGDA-PSSSSSLAEAQPPLAAPPQKP 531

Query: 74  VPAPDRSLSGGSAHSGRFLKPRLRRSSGETDE 105
            P P  + S    ++  F +    RSS   DE
Sbjct: 532 QPHPQLNKSQSLTNAFSFSESSFFRSSANEDE 563


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,585,356
Number of Sequences: 37866
Number of extensions: 283894
Number of successful extensions: 1449
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 1306
Number of HSP's gapped (non-prelim): 297
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.