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Search of human proteins with 81295796
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|81295796 HERV-H LTR-associating 3 isoform 2 [Homo sapiens]
(114 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|81295796 HERV-H LTR-associating 3 isoform 2 [Homo sapiens] 245 5e-66
gi|72534678 HERV-H LTR-associating 3 isoform 1 [Homo sapiens] 119 5e-28
gi|81295798 HERV-H LTR-associating 3 isoform 3 [Homo sapiens] 115 6e-27
gi|21361827 methyltransferase like 3 [Homo sapiens] 35 0.010
gi|194097330 hexokinase 3 [Homo sapiens] 30 0.41
gi|113722125 inositol polyphosphate-5-phosphatase, 75kDa precurs... 28 1.2
gi|26051262 potassium voltage-gated channel KQT-like protein 2 i... 28 2.0
gi|26051264 potassium voltage-gated channel KQT-like protein 2 i... 28 2.0
gi|26051260 potassium voltage-gated channel KQT-like protein 2 i... 28 2.0
gi|26051266 potassium voltage-gated channel KQT-like protein 2 i... 28 2.0
gi|4502079 adenosine monophosphate deaminase 3 isoform 1A [Homo ... 27 2.7
gi|91984775 regulator of telomere elongation helicase 1 isoform ... 27 2.7
gi|7706541 regulator of telomere elongation helicase 1 isoform 1... 27 2.7
gi|253970489 acyl-CoA synthetase short-chain family member 2 iso... 27 4.6
gi|8923896 acyl-CoA synthetase short-chain family member 2 isofo... 27 4.6
gi|24308039 hypothetical protein LOC23376 [Homo sapiens] 27 4.6
gi|67782311 superkiller viralicidic activity 2-like homolog [Hom... 27 4.6
gi|116292172 lipid storage droplet protein 5 [Homo sapiens] 27 4.6
gi|91982767 semaphorin 5B isoform 1 [Homo sapiens] 27 4.6
gi|34577114 cytomatrix protein p110 [Homo sapiens] 26 5.9
gi|34594669 HCCA2 protein [Homo sapiens] 26 5.9
gi|154350241 brefeldin A-inhibited guanine nucleotide-exchange p... 26 7.8
>gi|81295796 HERV-H LTR-associating 3 isoform 2 [Homo sapiens]
Length = 114
Score = 245 bits (626), Expect = 5e-66
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCTKLANM 60
MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCTKLANM
Sbjct: 1 MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCTKLANM 60
Query: 61 YSTSTDCREHCRRGMKAKQLKAEAGRSCQRKGVPIQTPREHSWISCKKEFEANP 114
YSTSTDCREHCRRGMKAKQLKAEAGRSCQRKGVPIQTPREHSWISCKKEFEANP
Sbjct: 61 YSTSTDCREHCRRGMKAKQLKAEAGRSCQRKGVPIQTPREHSWISCKKEFEANP 114
>gi|72534678 HERV-H LTR-associating 3 isoform 1 [Homo sapiens]
Length = 121
Score = 119 bits (298), Expect = 5e-28
Identities = 54/54 (100%), Positives = 54/54 (100%)
Query: 1 MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVC 54
MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVC
Sbjct: 1 MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVC 54
>gi|81295798 HERV-H LTR-associating 3 isoform 3 [Homo sapiens]
Length = 76
Score = 115 bits (289), Expect = 6e-27
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAV 53
MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAV
Sbjct: 1 MFGACYKQPLKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAV 53
>gi|21361827 methyltransferase like 3 [Homo sapiens]
Length = 580
Score = 35.4 bits (80), Expect = 0.010
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 2 FGACYKQPLKPSGSEPPAEECRMTPRHAGCDV-TEMQRILSQPTFTEHLLRAVCTKLANM 60
F + L S SEP E + + +HA DV E++ +L+Q + E + V ++ +
Sbjct: 190 FASSLVSGLNSSASEPAKEPAKKSRKHAASDVDLEIESLLNQQSTKEQQSKKVSQEILEL 249
Query: 61 YSTST----------------DCREHCRRGMKAKQLKA-EAGRSCQR 90
+T+T +E C G K + +KA +A R C++
Sbjct: 250 LNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKASDADRPCRK 296
>gi|194097330 hexokinase 3 [Homo sapiens]
Length = 923
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 17/104 (16%)
Query: 1 MFGACYKQPLKPSGS----------EPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLL 50
+FG C L GS +P R+ HA + S +H+
Sbjct: 332 LFGGCTSPALLSQGSILLEHVAEMEDPSTGAARV---HAILQDLGLSPGASDVELVQHVC 388
Query: 51 RAVCTKLANMYSTS----TDCREHCRRGMKAKQLKAEAGRSCQR 90
AVCT+ A + + + C +H R + A GR C+R
Sbjct: 389 AAVCTRAAQLCAAALAAVLSCLQHSREQQTLQVAVATGGRVCER 432
>gi|113722125 inositol polyphosphate-5-phosphatase, 75kDa precursor
[Homo sapiens]
Length = 913
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 58 ANMYSTSTDCREHCRRGMKAKQLKAEAGRSCQRKGVP-----IQTPREHSWISCKKEFEA 112
AN+ S S RE C + +K QLK E+ + VP I P E S+ CK+ A
Sbjct: 585 ANIPSVSLSKREFCFQNVKYMQLKVES-FTIHNGQVPCHFEFINKPDEESY--CKQWLNA 641
Query: 113 NP 114
NP
Sbjct: 642 NP 643
>gi|26051262 potassium voltage-gated channel KQT-like protein 2
isoform b [Homo sapiens]
Length = 854
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 36 MQRILSQPTFTEHLLRAVCTKLANMYSTSTDCREHC-RRGMKAKQLKAEAGR-----SCQ 89
MQR+ PT TE A + A Y + D REH R G K +++ + S
Sbjct: 627 MQRMGIPPTETEAYFGAKEPEPAPPYHSPEDSREHVDRHGCIVKIVRSSSSTGQKNFSAP 686
Query: 90 RKGVPIQTPREHSW 103
P+Q P SW
Sbjct: 687 PAAPPVQCPPSTSW 700
>gi|26051264 potassium voltage-gated channel KQT-like protein 2
isoform a [Homo sapiens]
Length = 872
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 36 MQRILSQPTFTEHLLRAVCTKLANMYSTSTDCREHC-RRGMKAKQLKAEAGR-----SCQ 89
MQR+ PT TE A + A Y + D REH R G K +++ + S
Sbjct: 645 MQRMGIPPTETEAYFGAKEPEPAPPYHSPEDSREHVDRHGCIVKIVRSSSSTGQKNFSAP 704
Query: 90 RKGVPIQTPREHSW 103
P+Q P SW
Sbjct: 705 PAAPPVQCPPSTSW 718
>gi|26051260 potassium voltage-gated channel KQT-like protein 2
isoform c [Homo sapiens]
Length = 844
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 36 MQRILSQPTFTEHLLRAVCTKLANMYSTSTDCREHC-RRGMKAKQLKAEAGR-----SCQ 89
MQR+ PT TE A + A Y + D REH R G K +++ + S
Sbjct: 617 MQRMGIPPTETEAYFGAKEPEPAPPYHSPEDSREHVDRHGCIVKIVRSSSSTGQKNFSAP 676
Query: 90 RKGVPIQTPREHSW 103
P+Q P SW
Sbjct: 677 PAAPPVQCPPSTSW 690
>gi|26051266 potassium voltage-gated channel KQT-like protein 2
isoform d [Homo sapiens]
Length = 841
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 36 MQRILSQPTFTEHLLRAVCTKLANMYSTSTDCREHC-RRGMKAKQLKAEAGR-----SCQ 89
MQR+ PT TE A + A Y + D REH R G K +++ + S
Sbjct: 614 MQRMGIPPTETEAYFGAKEPEPAPPYHSPEDSREHVDRHGCIVKIVRSSSSTGQKNFSAP 673
Query: 90 RKGVPIQTPREHSW 103
P+Q P SW
Sbjct: 674 PAAPPVQCPPSTSW 687
>gi|4502079 adenosine monophosphate deaminase 3 isoform 1A [Homo
sapiens]
Length = 776
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 15 SEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCTKLANMYSTSTDC----REH 70
S PAE R P+ +V E R+L++ F + L ++++ DC +E
Sbjct: 4 SSEPAEMPRQFPKLNISEVDEQVRLLAEKVFAKVLREEDSKDALSLFTVPEDCPIGQKEA 63
Query: 71 CRRGMKAKQLKAEAGRSCQRK---------GVPIQTPREHSW 103
R ++ + + ++ + +RK + +Q P + W
Sbjct: 64 KERELQKELAEQKSVETAKRKKSFKMIRSQSLSLQMPPQQDW 105
>gi|91984775 regulator of telomere elongation helicase 1 isoform 2
[Homo sapiens]
Length = 1300
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 31 CDVTEMQRILSQPTFTEHLLRAVCTKLANMYSTSTDCREHCRRGMKAKQLKAEA 84
C ++ IL PT T L +CT LA REH R G+ A+++ A
Sbjct: 31 CLQQKVNGILESPTGTGKTLCLLCTTLA--------WREHLRDGISARKIAERA 76
>gi|7706541 regulator of telomere elongation helicase 1 isoform 1
[Homo sapiens]
Length = 1219
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 31 CDVTEMQRILSQPTFTEHLLRAVCTKLANMYSTSTDCREHCRRGMKAKQLKAEA 84
C ++ IL PT T L +CT LA REH R G+ A+++ A
Sbjct: 31 CLQQKVNGILESPTGTGKTLCLLCTTLA--------WREHLRDGISARKIAERA 76
>gi|253970489 acyl-CoA synthetase short-chain family member 2
isoform 2 [Homo sapiens]
Length = 714
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 41 SQPTFTEHLLRAVCTKLANMYSTSTDCREHCRRGMKAKQLKAEAGRSCQRKGVPIQ 96
S + E +L + C+ L +TD + + K+L EA + CQ KG P++
Sbjct: 195 SSESLCERILDSSCSLLI-----TTDAFYRGEKLVNLKELADEALQKCQEKGFPVR 245
>gi|8923896 acyl-CoA synthetase short-chain family member 2 isoform
1 [Homo sapiens]
Length = 701
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 41 SQPTFTEHLLRAVCTKLANMYSTSTDCREHCRRGMKAKQLKAEAGRSCQRKGVPIQ 96
S + E +L + C+ L +TD + + K+L EA + CQ KG P++
Sbjct: 195 SSESLCERILDSSCSLLI-----TTDAFYRGEKLVNLKELADEALQKCQEKGFPVR 245
>gi|24308039 hypothetical protein LOC23376 [Homo sapiens]
Length = 794
Score = 26.6 bits (57), Expect = 4.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 41 SQPTFTEHLLRAVCTKLANM 60
+Q T+HLL++VCT + N+
Sbjct: 565 TQAALTKHLLKSVCTDITNL 584
>gi|67782311 superkiller viralicidic activity 2-like homolog [Homo
sapiens]
Length = 1246
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 12 PSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTF 45
P EPP++E P A V + R++ QP F
Sbjct: 272 PEAPEPPSQEQWAIPVDATSPVGDFYRLIPQPAF 305
>gi|116292172 lipid storage droplet protein 5 [Homo sapiens]
Length = 463
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 18/74 (24%)
Query: 20 EECRMTPRHAGCDVTE---MQRILSQPTFTEHLLRAVCTKLANMYSTSTD--------CR 68
EE PR + + + +QR+++ P L+RA CT + ++YS + D CR
Sbjct: 4 EEAAQIPRSSVWEQDQQNVVQRVVALP-----LVRATCTAVCDVYSAAKDRHPLLGSACR 58
Query: 69 --EHCRRGMKAKQL 80
E+C G+ + L
Sbjct: 59 LAENCVCGLTTRAL 72
>gi|91982767 semaphorin 5B isoform 1 [Homo sapiens]
Length = 1151
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 67 CREHCRRGMKAKQLKAEAGRSCQRKGVPIQT 97
C +C GM++++ E G SC GV +T
Sbjct: 734 CSSNCGGGMQSRRRACENGNSCLGCGVEFKT 764
>gi|34577114 cytomatrix protein p110 [Homo sapiens]
Length = 957
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 10 LKPSGSEPPAEECRMTPRHAGCDVTEMQRILSQPTFTEHLLRAVCTKLANMYSTSTDCRE 69
L E ++ + H+ T++ ++ + + E L A+ TKL + + ++DC++
Sbjct: 410 LNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQ 469
Query: 70 H---CRRGMKAKQLKA 82
H + + AK+ +A
Sbjct: 470 HIEVLKESLTAKEQRA 485
>gi|34594669 HCCA2 protein [Homo sapiens]
Length = 237
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 7 KQPLKPSGSEPPAEECR--MTPRHAGCDVTEMQ 37
K KP+G +P AEE + + P H +T+ Q
Sbjct: 7 KSKAKPNGKKPAAEERKAYLEPEHTKARITDFQ 39
>gi|154350241 brefeldin A-inhibited guanine nucleotide-exchange
protein 3 [Homo sapiens]
Length = 2177
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 25 TPRHAGCDVTEMQRILSQPTFTEHLLRAVCTKLANMYSTS 64
T GC + + P FTE + R C L + +S +
Sbjct: 1579 TISRVGCSCIRYVLVTAGPVFTEEMWRLACCALQDAFSAT 1618
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.130 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,321,556
Number of Sequences: 37866
Number of extensions: 215894
Number of successful extensions: 542
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 22
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.