Guide to the Human Genome
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Name: UCHL5 Sequence: fasta or formatted (329aa) NCBI GI: 7706753
Description:

ubiquitin carboxyl-terminal hydrolase L5

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         24           2
 C cysteine            1.5          5           1
 D aspartate           4.6         15           2
 E glutamate          10.9         36           3
 F phenylalanine       5.2         17           2
 G glycine             5.2         17           1
 H histidine           2.1          7           1
 I isoleucine          6.4         21           1
 K lysine              7.6         25           2
 L leucine             8.8         29           2
 M methionine          3.0         10           1
 N asparagine          4.6         15           2
 P proline             3.3         11           1
 Q glutamine           7.0         23           2
 R arginine            4.3         14           2
 S serine              5.8         19           1
 T threonine           3.3         11           1
 V valine              6.1         20           2
 W tryptophan          1.2          4           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin carboxyl-terminal hydrolase L5 
BAP1                  0.253   BRCA1 associated protein-1 
UCHL3                 0.095   ubiquitin carboxyl-terminal esterase L3 
UCHL1                 0.070   ubiquitin carboxyl-terminal esterase L1 
PLEKHH1               0.019   pleckstrin homology domain containing, family H (wit...
KIAA0774              0.017   hypothetical protein LOC23281 isoform b 
KIAA0774              0.017   hypothetical protein LOC23281 isoform a 
PHLDB1                0.017   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.017   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.017   pleckstrin homology-like domain, family B, member 1 ...
INCENP                0.016   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.016   inner centromere protein antigens 135/155kDa isofor...
NOP56                 0.016   nucleolar protein 5A 
IFT81                 0.016   intraflagellar transport 81-like isoform 1 
IFT81                 0.016   intraflagellar transport 81-like isoform 1 
RPGRIP1L              0.014   RPGRIP1-like isoform b 
RPGRIP1L              0.014   RPGRIP1-like isoform a 
CCDC146               0.014   coiled-coil domain containing 146 
CCDC147               0.014   coiled-coil domain containing 147 
KRT39                 0.014   type I hair keratin KA35 
TCHH                  0.014   trichohyalin 
WDR67                 0.013   WD repeat domain 67 isoform 1 
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
FILIP1                0.013   filamin A interacting protein 1 
ANKRD26               0.013   ankyrin repeat domain 26 
KRT32                 0.013   keratin 32 
MYH3                  0.011   myosin, heavy chain 3, skeletal muscle, embryonic [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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